Marker Genes

Dataset: Single-Cell Transcriptomics Analyses of Neural Stem Cell Heterogeneity and Contextual Plasticity in a Zebrafish Brain Model of Amyloid Toxicity

  • tissue: Brain
  • ontology: Brain
  • genotype: Tg(her4.1:GFP)
  • stage:
  • treatment condition: IL-4 treated

Rows:91
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
32 17 NN_7 Neurons_7 merged CU914164.2 NULL 0.75 0.15 0.001 2.61403028179674e-31 3.8993489713562e-27
32 17 NN_7 Neurons_7 merged ints8 553794 ZDB-GENE-050522-556 1.04 0.3 0.02 1.54938396696264e-09 2.31121606351817e-05
32 17 NN_7 Neurons_7 merged vcla 552980 ZDB-GENE-050506-61 0.81 0.15 0.008 1.85949622121061e-08 0.000277381051318
32 17 NN_7 Neurons_7 merged AL929077.2 NULL 0.64 0.15 0.008 2.12499738798672e-08 0.000316985860366
32 17 NN_7 Neurons_7 merged znf1099.1 NULL 0.65 0.15 0.008 5.60471673685791e-08 0.000836055595637
32 17 NN_7 Neurons_7 merged neurod4 266958 ZDB-GENE-030730-1 1.15 0.15 0.01 2.70513015344799e-06 0.04
32 17 NN_7 Neurons_7 merged sash1b 566448 ZDB-GENE-110228-1 1.01 0.3 0.04 2.78400184358835e-06 0.04
32 17 NN_7 Neurons_7 merged si:ch211-5k11.8 497162 ZDB-GENE-131121-640 0.75 0.15 0.01 7.90289792135591e-06 0.11
32 17 NN_7 Neurons_7 merged aplnr2 793710 ZDB-GENE-030131-4347 0.85 0.15 0.01 1.85261505710363e-05 0.27
32 17 NN_7 Neurons_7 merged si:dkey-86e18.1 557342 ZDB-GENE-041014-18 0.87 0.15 0.01 4.24942992316658e-05 0.63
32 17 NN_7 Neurons_7 merged lmnb2 30196 ZDB-GENE-990630-13 1.07 0.3 0.05 5.99741120893554e-05 0.89
32 17 NN_7 Neurons_7 merged zgc:109986 553566 ZDB-GENE-050522-136 0.88 0.23 0.03 7.94839387380162e-05 1
32 17 NN_7 Neurons_7 merged mcm7 192333 ZDB-GENE-020419-27 1.04 0.38 0.09 0.000127903242555 1
32 17 NN_7 Neurons_7 merged her4.2.1 NULL 0.55 1 0.48 0.000146863261192 1
32 17 NN_7 Neurons_7 merged sufu 100001615 ZDB-GENE-030131-6223 1 0.38 0.1 0.000270238323568 1
32 17 NN_7 Neurons_7 merged tob1a 386629 ZDB-GENE-031030-4 -1.52 0.23 0.78 0.000278711174185 1
32 17 NN_7 Neurons_7 merged spag6 431757 ZDB-GENE-040704-53 0.5 0.15 0.01 0.000285850990488 1
32 17 NN_7 Neurons_7 merged nhlh2 402968 ZDB-GENE-040426-1809 1.19 0.23 0.03 0.00030255627507 1
32 17 NN_7 Neurons_7 merged setmar 564575 ZDB-GENE-080204-61 0.69 0.15 0.01 0.000337798869428 1
32 17 NN_7 Neurons_7 merged ctnnb1 30265 ZDB-GENE-980526-362 0.77 0.84 0.53 0.000352243759058 1
32 17 NN_7 Neurons_7 merged CU074420.1 NULL 0.91 0.23 0.04 0.000365919792019 1
32 17 NN_7 Neurons_7 merged ywhaqb 335195 ZDB-GENE-030131-7135 -1.31 0.07 0.61 0.000421558755766 1
32 17 NN_7 Neurons_7 merged ubb 550134 ZDB-GENE-050411-10 -1.44 0.23 0.72 0.000446954573224 1
32 17 NN_7 Neurons_7 merged zgc:113426 562128 ZDB-GENE-050913-149 0.81 0.15 0.02 0.000523291998144 1
32 17 NN_7 Neurons_7 merged smarcb1b 30731 ZDB-GENE-991008-16 0.96 0.3 0.07 0.000723926723894 1
32 17 NN_7 Neurons_7 merged acp2 503759 ZDB-GENE-050306-40 0.79 0.15 0.02 0.00078809379679 1
32 17 NN_7 Neurons_7 merged tatdn3 553592 ZDB-GENE-050522-192 0.8 0.23 0.04 0.000858768669812 1
32 17 NN_7 Neurons_7 merged sst1.1 326018 ZDB-GENE-030131-4743 -0.52 0.53 0.21 0.00094778028411 1
32 17 NN_7 Neurons_7 merged nkx2.1 81883 ZDB-GENE-010404-1 0.98 0.23 0.04 0.001036535344442 1
32 17 NN_7 Neurons_7 merged akap12b 567365 ZDB-GENE-030131-9753 0.93 0.3 0.07 0.001153926120726 1
32 17 NN_7 Neurons_7 merged tpra 571089 ZDB-GENE-081104-2 0.6 0.15 0.02 0.001456473333851 1
32 17 NN_7 Neurons_7 merged cd99l2 323266 ZDB-GENE-030131-1986 1.25 0.61 0.31 0.001495227606405 1
32 17 NN_7 Neurons_7 merged si:ch211-193l2.5 ZDB-GENE-141216-226 0.99 0.76 0.44 0.001518882030156 1
32 17 NN_7 Neurons_7 merged dsc2l 560091 ZDB-GENE-031116-55 0.82 0.15 0.02 0.001621909745642 1
32 17 NN_7 Neurons_7 merged jund 564873 ZDB-GENE-070725-2 -1.21 0.07 0.55 0.001630744282167 1
32 17 NN_7 Neurons_7 merged si:dkey-42i9.4 492503 ZDB-GENE-030131-8398 0.78 0.69 0.4 0.001652455867443 1
32 17 NN_7 Neurons_7 merged her4.2 100148329 ZDB-GENE-060815-1 0.44 0.92 0.58 0.002011785775761 1
32 17 NN_7 Neurons_7 merged gem 560566 ZDB-GENE-060825-251 0.39 0.23 0.04 0.002155000560821 1
32 17 NN_7 Neurons_7 merged insm1b 323882 ZDB-GENE-030131-2602 0.92 0.23 0.05 0.00231824135355 1
32 17 NN_7 Neurons_7 merged tubb5 386701 ZDB-GENE-031110-4 1.69 0.61 0.33 0.002375631423228 1
32 17 NN_7 Neurons_7 merged nck2a 393972 ZDB-GENE-040426-686 0.85 0.23 0.05 0.002472690746479 1
32 17 NN_7 Neurons_7 merged memo1 327360 ZDB-GENE-030131-5571 0.76 0.15 0.02 0.0025311738744 1
32 17 NN_7 Neurons_7 merged calcoco2 553776 ZDB-GENE-050522-346 0.76 0.15 0.02 0.002631279227652 1
32 17 NN_7 Neurons_7 merged nr4a1 431720 ZDB-GENE-040704-11 -1.34 0.07 0.55 0.002643448354711 1
32 17 NN_7 Neurons_7 merged gabarapa 326974 ZDB-GENE-030131-5174 -1.08 0.07 0.53 0.002846948383426 1
32 17 NN_7 Neurons_7 merged gnb1b 406796 ZDB-GENE-040426-2855 -0.84 0.15 0.68 0.002914440035628 1
32 17 NN_7 Neurons_7 merged arhgef1b 557983 ZDB-GENE-060616-136 1.17 0.61 0.32 0.002935365105938 1
32 17 NN_7 Neurons_7 merged cox6b2 393478 ZDB-GENE-040426-1566 -0.83 0.15 0.68 0.002978630820236 1
32 17 NN_7 Neurons_7 merged si:ch211-193l2.7 798927 ZDB-GENE-141216-393 0.75 0.15 0.02 0.003148021781788 1
32 17 NN_7 Neurons_7 merged ndufb4 406306 ZDB-GENE-040426-1973 -1.04 0 0.42 0.003243764951585 1
32 17 NN_7 Neurons_7 merged gpia 246094 ZDB-GENE-020513-2 -1.01 0.07 0.54 0.003282973581371 1
32 17 NN_7 Neurons_7 merged armh3 393591 ZDB-GENE-040426-1249 0.57 0.15 0.02 0.003596238423884 1
32 17 NN_7 Neurons_7 merged sox4a.1 NULL 0.89 0.69 0.41 0.003751051984961 1
32 17 NN_7 Neurons_7 merged cspg5a 558206 ZDB-GENE-080425-4 -1.24 0 0.41 0.003792045255436 1
32 17 NN_7 Neurons_7 merged btg1 114432 ZDB-GENE-010726-1 -0.89 0.53 0.88 0.003813416044969 1
32 17 NN_7 Neurons_7 merged mbd3b 321217 ZDB-GENE-030131-9792 -1.06 0 0.4 0.004189756942625 1
32 17 NN_7 Neurons_7 merged bhlhe23 559796 ZDB-GENE-050913-22 0.87 0.23 0.05 0.004465462307959 1
32 17 NN_7 Neurons_7 merged fosb 492346 ZDB-GENE-041114-181 -1.4 0.23 0.61 0.004510285795633 1
32 17 NN_7 Neurons_7 merged exosc3.1 NULL 0.83 0.23 0.05 0.00469104445242 1
32 17 NN_7 Neurons_7 merged si:ch211-193l2.4 ZDB-GENE-141216-189 0.45 0.76 0.4 0.004692107410908 1
32 17 NN_7 Neurons_7 merged zdhhc18b 334383 ZDB-GENE-030131-6315 0.75 0.23 0.05 0.005071814335115 1
32 17 NN_7 Neurons_7 merged si:dkey-15f17.8 796750 ZDB-GENE-090313-192 0.59 0.15 0.02 0.005170179599862 1
32 17 NN_7 Neurons_7 merged atp5pb 449787 ZDB-GENE-041010-33 -0.88 0.15 0.58 0.005199124631178 1
32 17 NN_7 Neurons_7 merged insm1a 402941 ZDB-GENE-040426-1810 0.9 0.15 0.02 0.005230179328833 1
32 17 NN_7 Neurons_7 merged tet2 101887161 ZDB-GENE-090312-98 0.77 0.15 0.02 0.005341176702092 1
32 17 NN_7 Neurons_7 merged zgc:113436 503528 ZDB-GENE-050220-6 0.45 0.15 0.02 0.00553971857419 1
32 17 NN_7 Neurons_7 merged mydgf 436753 ZDB-GENE-040718-183 0.96 0.3 0.1 0.006293286781487 1
32 17 NN_7 Neurons_7 merged bud23 572367 ZDB-GENE-070410-68 0.83 0.23 0.06 0.006328233892559 1
32 17 NN_7 Neurons_7 merged aldocb 369193 ZDB-GENE-030821-1 -0.6 0.61 0.87 0.006452385114013 1
32 17 NN_7 Neurons_7 merged arl6ip5b 436790 ZDB-GENE-040718-223 -1.09 0 0.38 0.006566583465309 1
32 17 NN_7 Neurons_7 merged atp6v1e1b 192335 ZDB-GENE-020419-11 -1.16 0.07 0.47 0.00684299382088 1
32 17 NN_7 Neurons_7 merged diras1a 327577 ZDB-GENE-030131-5788 -1.2 0 0.37 0.007032808075515 1
32 17 NN_7 Neurons_7 merged AL929185.2 NULL 1.03 0.15 0.02 0.007312649311852 1
32 17 NN_7 Neurons_7 merged sdha 393884 ZDB-GENE-040426-874 -0.97 0 0.37 0.007338999236334 1
32 17 NN_7 Neurons_7 merged fmnl2a 100006456 ZDB-GENE-081105-70 0.78 0.15 0.03 0.007373674105054 1
32 17 NN_7 Neurons_7 merged cnbpb 335839 ZDB-GENE-030131-7782 -0.42 0.15 0.66 0.007430954241399 1
32 17 NN_7 Neurons_7 merged her12 402914 ZDB-GENE-040824-5 0.66 0.3 0.09 0.007434947847942 1
32 17 NN_7 Neurons_7 merged smarcd3a 564652 ZDB-GENE-070912-491 0.65 0.23 0.06 0.007501846209358 1
32 17 NN_7 Neurons_7 merged mcm5 286747 ZDB-GENE-021209-1 0.72 0.23 0.05 0.007541277741722 1
32 17 NN_7 Neurons_7 merged fabp3 171478 ZDB-GENE-020318-2 0.46 0.92 0.83 0.007742246502658 1
32 17 NN_7 Neurons_7 merged si:dkey-51a16.9 100005267 ZDB-GENE-030616-560 0.7 0.23 0.06 0.00798460918124 1
32 17 NN_7 Neurons_7 merged si:dkeyp-75h12.5 566718 ZDB-GENE-030131-7914 -1.05 0.07 0.47 0.008051835705518 1
32 17 NN_7 Neurons_7 merged atp1a3a 64610 ZDB-GENE-001212-7 -1.53 0 0.36 0.008330265979846 1
32 17 NN_7 Neurons_7 merged rbm4.3 406277 ZDB-GENE-040426-1938 -0.77 0.07 0.49 0.008782740611286 1
32 17 NN_7 Neurons_7 merged tspan7b 449539 ZDB-GENE-040927-5 -0.9 0.23 0.68 0.008929047548036 1
32 17 NN_7 Neurons_7 merged ywhaqa 399487 ZDB-GENE-040122-5 -0.83 0.15 0.58 0.009025125839 1
32 17 NN_7 Neurons_7 merged tjp1b 565459 ZDB-GENE-070925-1 0.89 0.3 0.1 0.009236628906083 1
32 17 NN_7 Neurons_7 merged eef2l2 336168 ZDB-GENE-030131-8112 -0.97 0 0.35 0.009517696116052 1
32 17 NN_7 Neurons_7 merged hspa8 573376 ZDB-GENE-990415-92 -0.59 0.38 0.88 0.009800149644721 1
32 17 NN_7 Neurons_7 merged ntn1b 30192 ZDB-GENE-990415-168 0.82 0.15 0.03 0.009815113650899 1
32 17 NN_7 Neurons_7 merged mrap2a 100003330 ZDB-GENE-100729-3 0.45 0.15 0.03 0.009970076992173 1