Marker Genes

Dataset: A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation

  • tissue: Neocortex
  • ontology: Brain
  • genotype: -
  • stage:
  • treatment condition: WT
  • cell/nucleus: Cells
  • pmid: 31303374
  • subset name: subcluster
  • total genes: Not reported
  • clustering: Seurat
  • pseudotime: Monocle 2
  • link:

Rows:157
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
31 12 InCGE Caudal ganglionic eminence interneurons subcluster DLX6-AS1 285987 37151 3.94 98.7 10.9 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CCDC88A 55704 25523 1.86 87.9 55.1 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster DLX1 1745 2914 1.82 66 5.5 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CALB2 794 1435 1.38 49.2 2.4 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SOX2-OT 347689 20209 1.33 54.8 8.3 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster MEG3 55384 14575 1.22 58.5 22.3 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PDZRN3 23024 17704 1.21 47.7 2.9 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ERBB4 2066 3432 1.2 49.4 5.8 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster TCF4 6925 11634 1.13 85.7 68.8 2.45514260323307e-210
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PLS3 5358 9091 1 43.2 4.8 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster DCX 1641 2714 0.98 80.7 62.7 9.9670574773631e-167
31 12 InCGE Caudal ganglionic eminence interneurons subcluster DST 667 1090 0.94 56.6 35.5 2.34013936906217e-179
31 12 InCGE Caudal ganglionic eminence interneurons subcluster MTSS1 9788 20443 0.84 52.9 29.5 3.63246707653726e-211
31 12 InCGE Caudal ganglionic eminence interneurons subcluster BTG1 694 1130 0.82 52.8 29.5 1.05987536212823e-196
31 12 InCGE Caudal ganglionic eminence interneurons subcluster DLX5 1749 2918 0.82 35.6 3.1 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SOX2 6657 11195 0.81 44.6 17.5 3.51854439515873e-197
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SOX4 6659 11200 0.81 93 80.1 2.15069332698498e-98
31 12 InCGE Caudal ganglionic eminence interneurons subcluster DLX2 1746 2915 0.8 35.4 3.5 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PCDH9 5101 8661 0.79 39.5 16.9 1.53285599030966e-260
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SCGN 10590 16941 0.78 31.2 1.5 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ZNF704 619279 32291 0.75 49.7 28 7.50579974970663e-157
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CITED2 10370 1987 0.74 38.2 13.4 6.91847238416798e-317
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CELF4 56853 14015 0.72 35.2 10.2 6.42285339593621e-322
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PFN2 5217 8882 0.72 43.7 22.8 1.04545789153894e-206
31 12 InCGE Caudal ganglionic eminence interneurons subcluster TMEM123 114908 30138 0.7 34.2 9.8 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CHD7 55636 20626 0.69 36.5 14.7 5.7723473136107e-237
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ARX 170302 18060 0.68 32.4 6.4 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster NR2F2 7026 7976 0.66 28.6 3.6 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster GAD2 2572 4093 0.66 29.6 3.1 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PROX1 5629 9459 0.64 25.6 1.4 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RIPOR2 9750 13872 0.6 27.1 3 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CPLX2 10814 2310 0.6 29.4 8 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster GAS2L3 283431 27475 0.53 25.2 5.7 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CDH2 1000 1759 0.51 36.9 23.7 4.08513898170342e-102
31 12 InCGE Caudal ganglionic eminence interneurons subcluster H3F3B 3021 4765 0.51 81.8 76.8 8.19331006037008e-49
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ELAVL4 1996 3315 0.49 43 30.7 2.50867093053397e-69
31 12 InCGE Caudal ganglionic eminence interneurons subcluster KIF2A 3796 6318 0.49 46 37 3.14143220504345e-64
31 12 InCGE Caudal ganglionic eminence interneurons subcluster DCLK2 166614 19002 0.49 27.4 9.6 4.61858003134037e-200
31 12 InCGE Caudal ganglionic eminence interneurons subcluster AP1S2 8905 560 0.48 32.4 19.2 7.13598753766755e-106
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ZEB2 9839 14881 0.48 45 32.7 1.62539905385574e-58
31 12 InCGE Caudal ganglionic eminence interneurons subcluster KIAA1211 57482 29219 0.47 32.9 18.9 4.6049023314871e-102
31 12 InCGE Caudal ganglionic eminence interneurons subcluster NR2F1 7025 7975 0.46 43.1 36.5 6.77685854179208e-55
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CXCR4 7852 2561 0.46 21.8 3.7 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RND3 390 671 0.43 32.6 20.3 1.41818945206036e-72
31 12 InCGE Caudal ganglionic eminence interneurons subcluster INA 9118 6057 0.43 28 15 2.98719340312376e-102
31 12 InCGE Caudal ganglionic eminence interneurons subcluster MYCBP2 23077 23386 0.43 35.1 25.1 5.94389883426334e-61
31 12 InCGE Caudal ganglionic eminence interneurons subcluster EEA1 8411 3185 0.41 26.2 15.1 2.26971345220575e-90
31 12 InCGE Caudal ganglionic eminence interneurons subcluster VSTM2A 222008 28499 0.4 17.9 1.5 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster THRB 7068 11799 0.4 17.6 1.3 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ARL4C 10123 698 0.4 35.5 24.6 1.65363791790794e-55
31 12 InCGE Caudal ganglionic eminence interneurons subcluster LINC00461 645323 42810 0.39 55 51.5 3.72564624375356e-33
31 12 InCGE Caudal ganglionic eminence interneurons subcluster MLLT11 10962 16997 0.38 60.8 55.3 8.50773364668179e-30
31 12 InCGE Caudal ganglionic eminence interneurons subcluster HMGN2 3151 4986 0.38 38 31.9 4.3930631247253e-39
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PNRC1 10957 17278 0.38 30.9 20.6 1.17675316484521e-65
31 12 InCGE Caudal ganglionic eminence interneurons subcluster NNAT 4826 7860 0.37 67.4 64.8 6.65517780626801e-26
31 12 InCGE Caudal ganglionic eminence interneurons subcluster FEZ1 9638 3659 0.37 41.9 37.7 1.12947965705856e-37
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PDE4DIP 9659 15580 0.36 27.3 16 6.80285335087474e-71
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SUB1 10923 19985 0.36 36.9 31.2 3.28196830923486e-45
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SP8 221833 19196 0.36 16.2 1.6 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster NSG2 51617 24955 0.36 48.3 41.8 7.96568128599384e-28
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CADM1 23705 5951 0.35 36.4 30.1 7.24147051756981e-38
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RDX 5962 9944 0.35 32.8 26.5 5.88409825407691e-42
31 12 InCGE Caudal ganglionic eminence interneurons subcluster FXYD6 53826 4030 0.35 40 35.8 6.42306163324627e-37
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ST8SIA5 29906 17827 0.34 16.2 1.2 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster EPHA5 2044 3389 0.34 32.8 26 7.78711223273183e-38
31 12 InCGE Caudal ganglionic eminence interneurons subcluster TMEM161B-AS1 100505894 43839 0.34 35 29.1 2.84453503237318e-39
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PAK3 5063 8592 0.34 33.4 27.4 7.01211972755298e-38
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ZNF91 7644 13166 0.34 34.6 27.6 3.17205519701066e-38
31 12 InCGE Caudal ganglionic eminence interneurons subcluster QKI 9444 21100 0.33 24.1 14.3 2.26815316214953e-63
31 12 InCGE Caudal ganglionic eminence interneurons subcluster JAKMIP2 9832 29067 0.33 30.3 24 3.70155129301685e-41
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ELOVL6 79071 15829 0.33 23.8 15.5 1.09051355237378e-59
31 12 InCGE Caudal ganglionic eminence interneurons subcluster POU3F4 5456 9217 0.33 18.2 6.3 1.92802055329541e-141
31 12 InCGE Caudal ganglionic eminence interneurons subcluster NRIP3 56675 1167 0.32 13.9 1 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster UBB 7314 12463 0.32 66 65.3 7.56383520557547e-22
31 12 InCGE Caudal ganglionic eminence interneurons subcluster TXN 7295 12435 0.32 37.7 35.3 1.64016929216406e-30
31 12 InCGE Caudal ganglionic eminence interneurons subcluster APC 324 583 0.31 42 40.2 1.08620184140308e-23
31 12 InCGE Caudal ganglionic eminence interneurons subcluster NPAS1 4861 7894 0.31 14.1 1.1 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CAMK2N1 55450 24190 0.31 39.5 35.7 3.00632345955484e-27
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SLC32A1 140679 11018 0.31 14.4 1.3 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RGS12 6002 9994 0.3 23.6 15.4 1.86605591009286e-53
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PRRC2C 23215 24903 0.3 46.4 45.2 2.0341080940735e-20
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ANKRD36C 400986 32946 0.3 46.2 44.5 2.20085646365122e-20
31 12 InCGE Caudal ganglionic eminence interneurons subcluster KITLG 4254 6343 0.29 13.6 2.2 1.29820689101246e-319
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SCG3 29106 13707 0.29 38.8 33.7 1.55061755074711e-24
31 12 InCGE Caudal ganglionic eminence interneurons subcluster MTUS1 57509 29789 0.29 16 5.3 1.71090851140379e-117
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RPL30 6156 10333 0.29 66.1 66.3 8.64016380219643e-19
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ID4 3400 5363 0.28 20.6 11.9 3.97563951179768e-39
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RAB3IP 117177 16508 0.28 15.1 5.6 1.82968778789546e-112
31 12 InCGE Caudal ganglionic eminence interneurons subcluster FTH1 2495 3976 0.28 78.4 79.8 6.30127861537244e-18
31 12 InCGE Caudal ganglionic eminence interneurons subcluster WLS 79971 30238 0.28 13.8 2.1 5.83683988097521e-268
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ZNF536 9745 29025 0.28 13.3 1.4 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster NRXN3 9369 8010 0.28 13.9 2 1.33439163773738e-229
31 12 InCGE Caudal ganglionic eminence interneurons subcluster KLHL35 283212 26597 0.27 19.2 9.9 1.19279838358293e-57
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RBP1 5947 9919 0.27 18.6 8.1 4.22853641419332e-64
31 12 InCGE Caudal ganglionic eminence interneurons subcluster DLX6 1750 2919 0.27 13.1 1.4 1.45914346134294e-285
31 12 InCGE Caudal ganglionic eminence interneurons subcluster AKAP9 10142 379 0.26 57.8 57.8 3.41306268509185e-12
31 12 InCGE Caudal ganglionic eminence interneurons subcluster POU2F1 5451 9212 0.26 16.8 8.4 1.65526328408312e-69
31 12 InCGE Caudal ganglionic eminence interneurons subcluster DEK 7913 2768 0.26 38 36.7 3.67394459661095e-19
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CHL1 10752 1939 0.26 35.4 33.2 1.30094440746919e-17
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ETFB 2109 3482 0.26 17.4 8.9 3.17221862252578e-67
31 12 InCGE Caudal ganglionic eminence interneurons subcluster TMSB10 9168 11879 0.26 93.9 92.6 7.76451107726092e-18
31 12 InCGE Caudal ganglionic eminence interneurons subcluster TMTC4 84899 25904 0.25 15.6 8.2 6.27979058785412e-73
31 12 InCGE Caudal ganglionic eminence interneurons subcluster MAGI1 9223 946 0.25 14.9 6.3 1.76867939764681e-84
31 12 InCGE Caudal ganglionic eminence interneurons subcluster NAV3 89795 15998 0.25 16.8 10.4 3.95868660389652e-49
31 12 InCGE Caudal ganglionic eminence interneurons subcluster GSE1 23199 28979 0.25 21.2 14.3 3.1253070125725e-39
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RUFY2 55680 19761 0.25 37 36 1.06371968678044e-16
31 12 InCGE Caudal ganglionic eminence interneurons subcluster NES 10763 7756 0.24 20.2 13.8 8.87586664710993e-37
31 12 InCGE Caudal ganglionic eminence interneurons subcluster GNG2 54331 4404 0.24 28 24.1 5.98218181143544e-25
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RPS29 6235 10419 0.24 76 78.1 5.55854258257892e-14
31 12 InCGE Caudal ganglionic eminence interneurons subcluster TNR 7143 11953 0.24 12.2 3.2 1.69559714288587e-144
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PDS5B 23047 20418 0.24 25.7 22.8 7.65532759067985e-24
31 12 InCGE Caudal ganglionic eminence interneurons subcluster NPAS3 64067 19311 0.24 12.6 3.5 4.38962544243974e-134
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RPLP2 6181 10377 0.24 71.5 73.8 2.41203485603799e-13
31 12 InCGE Caudal ganglionic eminence interneurons subcluster WNT5A 7474 12784 0.24 10.5 0.7 0
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SLAIN1 122060 26387 0.24 13 3.6 5.75216654205106e-130
31 12 InCGE Caudal ganglionic eminence interneurons subcluster MIAT 440823 33425 0.24 46.2 42.6 5.32395888334173e-14
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PDZRN4 29951 30552 0.23 13.8 3.5 9.60002377587593e-84
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SOX1 6656 11189 0.23 12.9 3.6 2.5314997399962e-118
31 12 InCGE Caudal ganglionic eminence interneurons subcluster HNRNPD 3184 5036 0.23 59.6 61.1 1.05741419093933e-12
31 12 InCGE Caudal ganglionic eminence interneurons subcluster YTHDC1 91746 30626 0.23 45 44.8 4.01287988554665e-13
31 12 InCGE Caudal ganglionic eminence interneurons subcluster HNRNPA2B1 3181 5033 0.23 81.3 81.9 1.52974062540485e-12
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RPS11 6205 10384 0.23 76.8 77.8 2.94060798541321e-12
31 12 InCGE Caudal ganglionic eminence interneurons subcluster NFIB 4781 7785 0.23 65.8 65.9 2.85707424548612e-10
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RERE 473 9965 0.23 28.2 23.5 2.15479930675357e-21
31 12 InCGE Caudal ganglionic eminence interneurons subcluster KMT5B 51111 24283 0.23 38.1 37.6 7.45088931102523e-14
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RNF180 285671 27752 0.23 15.5 9.4 9.50253616598758e-50
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RPL34 6164 10340 0.22 87.5 88.7 3.36151984588335e-13
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ATP1B1 481 804 0.22 23.4 19.3 5.07626408194947e-23
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SH3GLB1 51100 10833 0.22 18.5 14.1 7.92863907296857e-34
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PTMS 5763 9629 0.22 57 57.3 1.04956890760509e-12
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RASSF2 9770 9883 0.22 18.7 12.9 4.23279389059867e-36
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RAB8B 51762 30273 0.22 17.2 11.4 2.8960803677692e-39
31 12 InCGE Caudal ganglionic eminence interneurons subcluster PRKCA 5578 9393 0.22 11 1.8 1.77770593719268e-216
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RBM23 55147 20155 0.22 20.5 14.9 1.35373712760102e-30
31 12 InCGE Caudal ganglionic eminence interneurons subcluster KMT2A 4297 7132 0.22 42.9 44.3 6.44991373430753e-12
31 12 InCGE Caudal ganglionic eminence interneurons subcluster KAT6B 23522 17582 0.22 33.5 33 2.5328152910883e-14
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ENSG00000275131 NULL 0.22 16.3 9.4 6.13186446534731e-44
31 12 InCGE Caudal ganglionic eminence interneurons subcluster U2SURP 23350 30855 0.22 42 42.7 1.20333899277585e-12
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RPL27A 6157 10329 0.22 74.8 77.2 3.12351321451519e-11
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SPEN 23013 17575 0.22 37.4 37.2 2.26894916785647e-13
31 12 InCGE Caudal ganglionic eminence interneurons subcluster GAD1 2571 4092 0.22 12.6 2.6 2.89412605918905e-104
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RPL38 6169 10349 0.22 67.5 70.3 5.63724279986458e-11
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CLASP1 23332 17088 0.21 15.9 9.7 1.99850066178081e-45
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RPL11 6135 10301 0.21 80.9 82.7 2.34473501945555e-11
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CHD9 80205 25701 0.21 39.1 38.1 2.76382631934658e-12
31 12 InCGE Caudal ganglionic eminence interneurons subcluster LRRN3 54674 17200 0.21 14.1 8 7.29812352365702e-48
31 12 InCGE Caudal ganglionic eminence interneurons subcluster DPYSL3 1809 3015 0.21 53.8 53.9 1.07949284465138e-10
31 12 InCGE Caudal ganglionic eminence interneurons subcluster OGA 10724 7056 0.21 48.6 49.7 7.9046975929632e-11
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SMARCA5 8467 11101 0.21 40.3 40.3 1.30499343197759e-11
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SACS 26278 10519 0.2 16.2 11 3.67835136151026e-33
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ARID1B 57492 18040 0.2 16.5 11 1.02609055810292e-34
31 12 InCGE Caudal ganglionic eminence interneurons subcluster SMARCD1 6602 11106 0.2 18.1 12.8 1.02590084718498e-29
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RPL9 6133 10369 0.2 68.5 71 1.29777647586243e-09
31 12 InCGE Caudal ganglionic eminence interneurons subcluster ZNF711 7552 13128 0.2 44.8 44.9 4.82034834644282e-10
31 12 InCGE Caudal ganglionic eminence interneurons subcluster RPS27 6232 10416 0.2 77 80.8 1.63630919734319e-09
31 12 InCGE Caudal ganglionic eminence interneurons subcluster CRMP1 1400 2365 0.2 39.3 39.2 1.12945056321755e-11
31 12 InCGE Caudal ganglionic eminence interneurons subcluster TERF2IP 54386 19246 0.2 57.7 60 6.53413618662012e-09