Marker Genes

Dataset: A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation

  • tissue: Neocortex
  • ontology: Brain
  • genotype: -
  • stage:
  • treatment condition: WT
  • cell/nucleus: Cells
  • pmid: 31303374
  • subset name: subcluster
  • total genes: Not reported
  • clustering: Seurat
  • pseudotime: Monocle 2
  • link:

Rows:80
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
31 0 ExN Newborn excitatory neurons subcluster ENC1 8507 3345 1.15 73.3 55.2 0
31 0 ExN Newborn excitatory neurons subcluster SOX4 6659 11200 0.82 88.1 80.1 0
31 0 ExN Newborn excitatory neurons subcluster MEIS2 4212 7001 0.81 63.5 52.2 0
31 0 ExN Newborn excitatory neurons subcluster NEUROD6 63974 13804 0.81 72.1 59.7 0
31 0 ExN Newborn excitatory neurons subcluster SLA 6503 10902 0.73 63.9 52.5 0
31 0 ExN Newborn excitatory neurons subcluster EZR 7430 12691 0.71 58.8 48.5 0
31 0 ExN Newborn excitatory neurons subcluster ROBO2 6092 10250 0.69 49.6 37.8 0
31 0 ExN Newborn excitatory neurons subcluster SOX11 6664 11191 0.68 85.9 80.4 0
31 0 ExN Newborn excitatory neurons subcluster GRIA2 2891 4572 0.62 54.8 45.1 0
31 0 ExN Newborn excitatory neurons subcluster POU3F2 5454 9215 0.6 61.5 55.3 1.0857942530086E-300
31 0 ExN Newborn excitatory neurons subcluster MLLT3 4300 7136 0.57 52.5 44.4 2.4191475011722E-313
31 0 ExN Newborn excitatory neurons subcluster NFIB 4781 7785 0.56 69.6 65.9 5.6067678648897E-261
31 0 ExN Newborn excitatory neurons subcluster DDAH2 23564 2716 0.54 57.4 52.1 1.2925273537691E-284
31 0 ExN Newborn excitatory neurons subcluster NEUROD2 4761 7763 0.49 58.1 50.2 1.9861001421143E-207
31 0 ExN Newborn excitatory neurons subcluster SDCBP 6386 10662 0.42 34.2 26.7 7.9714671796579E-297
31 0 ExN Newborn excitatory neurons subcluster EPHB6 2051 3396 0.42 26.7 17 0
31 0 ExN Newborn excitatory neurons subcluster ZNF704 619279 32291 0.4 35.1 28 7.5061045469662E-214
31 0 ExN Newborn excitatory neurons subcluster SEMA3C 10512 10725 0.38 31.2 23.4 4.0994468125729E-249
31 0 ExN Newborn excitatory neurons subcluster KCNQ3 3786 6297 0.38 25 16.4 8.0381120931979E-318
31 0 ExN Newborn excitatory neurons subcluster LRP8 7804 6700 0.37 29.8 22.4 3.0545260068742E-249
31 0 ExN Newborn excitatory neurons subcluster MIR100HG 399959 39522 0.37 51.6 49.3 4.329389035088E-134
31 0 ExN Newborn excitatory neurons subcluster PALMD 54873 15846 0.36 27.1 20.6 5.7263233342182E-230
31 0 ExN Newborn excitatory neurons subcluster H3F3B 3021 4765 0.35 77 76.8 4.2962442776032E-115
31 0 ExN Newborn excitatory neurons subcluster LINC01551 387978 19828 0.34 37 33.2 7.4611072477697E-155
31 0 ExN Newborn excitatory neurons subcluster PRKX 5613 9441 0.34 23.6 15.2 1.0003138312776E-284
31 0 ExN Newborn excitatory neurons subcluster RPL34 6164 10340 0.33 87.7 88.7 1.9737145580745E-124
31 0 ExN Newborn excitatory neurons subcluster HS3ST1 9957 5194 0.32 19.3 10.7 0
31 0 ExN Newborn excitatory neurons subcluster RPL39 6170 10350 0.32 63.6 64.7 1.0943774763058E-97
31 0 ExN Newborn excitatory neurons subcluster NTM 50863 17941 0.32 31.8 27.6 6.4451477873732E-146
31 0 ExN Newborn excitatory neurons subcluster CPE 1363 2303 0.31 48.5 47.5 8.2194825385297E-103
31 0 ExN Newborn excitatory neurons subcluster IP6K2 51447 17313 0.3 39.8 36.9 1.2162647973938E-114
31 0 ExN Newborn excitatory neurons subcluster COX1 4512 7419 0.29 88.6 89.8 3.2252750221126E-101
31 0 ExN Newborn excitatory neurons subcluster PLXNA2 5362 9100 0.29 32.7 28.4 9.165292938803E-131
31 0 ExN Newborn excitatory neurons subcluster NRP1 8829 8004 0.29 15.8 7.1 0
31 0 ExN Newborn excitatory neurons subcluster COX3 4514 7422 0.29 83.4 85.4 1.0137561836798E-88
31 0 ExN Newborn excitatory neurons subcluster RPL10 6134 10298 0.29 83.9 84.8 8.2783064274974E-94
31 0 ExN Newborn excitatory neurons subcluster FAM126A 84668 24587 0.29 22.5 16.7 3.3535692417858E-204
31 0 ExN Newborn excitatory neurons subcluster CLMP 79827 24039 0.29 32 27.8 2.4483670446375E-116
31 0 ExN Newborn excitatory neurons subcluster RASD1 51655 15828 0.29 14.6 6.2 0
31 0 ExN Newborn excitatory neurons subcluster HES6 55502 18254 0.28 33.3 28.6 5.5530050180906E-109
31 0 ExN Newborn excitatory neurons subcluster PANTR1 100506421 49513 0.28 56.6 55.2 1.8130439656683E-70
31 0 ExN Newborn excitatory neurons subcluster TUBA1A 7846 20766 0.28 95 94.2 3.035366357443E-95
31 0 ExN Newborn excitatory neurons subcluster SORBS2 8470 24098 0.27 23.4 17.9 7.0745289770719E-159
31 0 ExN Newborn excitatory neurons subcluster RPS11 6205 10384 0.27 75.5 77.8 5.4339669871435E-72
31 0 ExN Newborn excitatory neurons subcluster GOLGA8A 23015 31972 0.26 24.4 20 1.0642466272986E-151
31 0 ExN Newborn excitatory neurons subcluster RPS27 6232 10416 0.26 79 80.8 1.9649113082733E-70
31 0 ExN Newborn excitatory neurons subcluster PAG1 55824 30043 0.26 17.2 10.9 9.2819009855057E-243
31 0 ExN Newborn excitatory neurons subcluster EEF1A1 1915 3189 0.26 80.3 83.1 1.5824416662892E-73
31 0 ExN Newborn excitatory neurons subcluster CD24 100133941 1645 0.26 56.4 55.6 8.6843896727876E-64
31 0 ExN Newborn excitatory neurons subcluster DOK6 220164 28301 0.25 17.9 12.3 8.4399444594886E-205
31 0 ExN Newborn excitatory neurons subcluster OCIAD2 132299 28685 0.25 32.7 29.8 1.0200526272329E-94
31 0 ExN Newborn excitatory neurons subcluster SLC17A6 57084 16703 0.25 15.3 8.4 5.9932206676731E-264
31 0 ExN Newborn excitatory neurons subcluster UNC5D 137970 18634 0.25 17 10.7 8.924830949077E-229
31 0 ExN Newborn excitatory neurons subcluster HNRNPA1 3178 5031 0.25 74.1 77 3.5999820198066E-61
31 0 ExN Newborn excitatory neurons subcluster POU3F3 5455 9216 0.25 42.7 43.2 3.6552889680004E-72
31 0 ExN Newborn excitatory neurons subcluster ST6GAL2 84620 10861 0.24 16.2 10 1.3014813397975E-227
31 0 ExN Newborn excitatory neurons subcluster PTMA 5757 9623 0.24 88.6 89.8 8.9547540061939E-69
31 0 ExN Newborn excitatory neurons subcluster NREP 9315 16834 0.24 71 70.6 3.0842083281524E-50
31 0 ExN Newborn excitatory neurons subcluster STMN2 11075 10577 0.24 84.3 77.6 4.8434440479605E-36
31 0 ExN Newborn excitatory neurons subcluster CHD3 1107 1918 0.24 57.1 58.2 6.8138897512078E-52
31 0 ExN Newborn excitatory neurons subcluster ZNF608 57507 29238 0.24 37.4 35.5 8.2870417456747E-67
31 0 ExN Newborn excitatory neurons subcluster CCND2 894 1583 0.23 51.4 51.9 1.6379929879296E-50
31 0 ExN Newborn excitatory neurons subcluster PHF20L1 51105 24280 0.23 32.7 31.8 1.2482587893799E-73
31 0 ExN Newborn excitatory neurons subcluster BTG1 694 1130 0.23 33.2 29.5 8.3674599614387E-76
31 0 ExN Newborn excitatory neurons subcluster GNG3 2785 4405 0.22 21.1 17.5 5.1576596595255E-127
31 0 ExN Newborn excitatory neurons subcluster RPS23 6228 10410 0.22 74 77 8.4858983101068E-50
31 0 ExN Newborn excitatory neurons subcluster BICD1 636 1049 0.22 34.2 34.6 5.6625775681347E-63
31 0 ExN Newborn excitatory neurons subcluster TUBB 203068 20778 0.22 81 82.2 1.1641679879999E-47
31 0 ExN Newborn excitatory neurons subcluster NRN1 51299 17972 0.22 15.2 9.5 1.9186690021082E-182
31 0 ExN Newborn excitatory neurons subcluster BCL11B 64919 13222 0.22 20.4 15.4 1.9404709808834E-111
31 0 ExN Newborn excitatory neurons subcluster TTC28 23331 29179 0.22 21.8 18.1 1.0220236185314E-113
31 0 ExN Newborn excitatory neurons subcluster RPS15A 6210 10389 0.21 67.4 71 2.452095071535E-47
31 0 ExN Newborn excitatory neurons subcluster SRGAP1 57522 17382 0.21 42.1 42.3 1.1926465347725E-48
31 0 ExN Newborn excitatory neurons subcluster EPHA5 2044 3389 0.21 28.4 26 2.0639744427833E-70
31 0 ExN Newborn excitatory neurons subcluster RPL11 6135 10301 0.21 79.5 82.7 3.9274896987561E-47
31 0 ExN Newborn excitatory neurons subcluster DPY19L1 23333 22205 0.2 13.4 8 7.8330596767809E-220
31 0 ExN Newborn excitatory neurons subcluster SMARCD3 6604 11108 0.2 21.8 18.2 9.1671937024921E-99
31 0 ExN Newborn excitatory neurons subcluster RPS21 6227 10409 0.2 62.6 65.8 1.8489098773113E-42
31 0 ExN Newborn excitatory neurons subcluster RPL32 6161 10336 0.2 78.6 81.4 5.4041450457618E-42
31 0 ExN Newborn excitatory neurons subcluster GNG4 2786 4407 0.2 16.8 12.9 1.3439534259065E-125