Marker Genes

Dataset: A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation

  • tissue: Neocortex
  • ontology: Brain
  • genotype: -
  • stage:
  • treatment condition: WT
  • cell/nucleus: Cells
  • pmid: 31303374
  • subset name: cluster
  • total genes: Not reported
  • clustering: Seurat
  • pseudotime: Monocle 2
  • link:

Rows:157
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
30 12 InCGE Caudal ganglionic eminence interneurons cluster DLX6-AS1 285987 37151 3.94 98.7 10.9 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster CCDC88A 55704 25523 1.86 87.9 55.1 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster DLX1 1745 2914 1.82 66 5.5 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster CALB2 794 1435 1.38 49.2 2.4 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster SOX2-OT 347689 20209 1.33 54.8 8.3 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster MEG3 55384 14575 1.22 58.5 22.3 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster PDZRN3 23024 17704 1.21 47.7 2.9 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster ERBB4 2066 3432 1.2 49.4 5.8 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster TCF4 6925 11634 1.13 85.7 68.8 2.4551426032331E-210
30 12 InCGE Caudal ganglionic eminence interneurons cluster PLS3 5358 9091 1 43.2 4.8 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster DCX 1641 2714 0.98 80.7 62.7 9.9670574773631E-167
30 12 InCGE Caudal ganglionic eminence interneurons cluster DST 667 1090 0.94 56.6 35.5 2.3401393690622E-179
30 12 InCGE Caudal ganglionic eminence interneurons cluster MTSS1 9788 20443 0.84 52.9 29.5 3.6324670765373E-211
30 12 InCGE Caudal ganglionic eminence interneurons cluster BTG1 694 1130 0.82 52.8 29.5 1.0598753621282E-196
30 12 InCGE Caudal ganglionic eminence interneurons cluster DLX5 1749 2918 0.82 35.6 3.1 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster SOX2 6657 11195 0.81 44.6 17.5 3.5185443951587E-197
30 12 InCGE Caudal ganglionic eminence interneurons cluster SOX4 6659 11200 0.81 93 80.1 2.150693326985E-98
30 12 InCGE Caudal ganglionic eminence interneurons cluster DLX2 1746 2915 0.8 35.4 3.5 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster PCDH9 5101 8661 0.79 39.5 16.9 1.5328559903097E-260
30 12 InCGE Caudal ganglionic eminence interneurons cluster SCGN 10590 16941 0.78 31.2 1.5 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster ZNF704 619279 32291 0.75 49.7 28 7.5057997497066E-157
30 12 InCGE Caudal ganglionic eminence interneurons cluster CITED2 10370 1987 0.74 38.2 13.4 6.918472384168E-317
30 12 InCGE Caudal ganglionic eminence interneurons cluster CELF4 56853 14015 0.72 35.2 10.2 6.4228533959362E-322
30 12 InCGE Caudal ganglionic eminence interneurons cluster PFN2 5217 8882 0.72 43.7 22.8 1.0454578915389E-206
30 12 InCGE Caudal ganglionic eminence interneurons cluster TMEM123 114908 30138 0.7 34.2 9.8 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster CHD7 55636 20626 0.69 36.5 14.7 5.7723473136107E-237
30 12 InCGE Caudal ganglionic eminence interneurons cluster ARX 170302 18060 0.68 32.4 6.4 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster NR2F2 7026 7976 0.66 28.6 3.6 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster GAD2 2572 4093 0.66 29.6 3.1 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster PROX1 5629 9459 0.64 25.6 1.4 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster RIPOR2 9750 13872 0.6 27.1 3 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster CPLX2 10814 2310 0.6 29.4 8 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster GAS2L3 283431 27475 0.53 25.2 5.7 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster CDH2 1000 1759 0.51 36.9 23.7 4.0851389817034E-102
30 12 InCGE Caudal ganglionic eminence interneurons cluster H3F3B 3021 4765 0.51 81.8 76.8 8.1933100603701E-49
30 12 InCGE Caudal ganglionic eminence interneurons cluster ELAVL4 1996 3315 0.49 43 30.7 2.508670930534E-69
30 12 InCGE Caudal ganglionic eminence interneurons cluster KIF2A 3796 6318 0.49 46 37 3.1414322050435E-64
30 12 InCGE Caudal ganglionic eminence interneurons cluster DCLK2 166614 19002 0.49 27.4 9.6 4.6185800313404E-200
30 12 InCGE Caudal ganglionic eminence interneurons cluster AP1S2 8905 560 0.48 32.4 19.2 7.1359875376675E-106
30 12 InCGE Caudal ganglionic eminence interneurons cluster ZEB2 9839 14881 0.48 45 32.7 1.6253990538557E-58
30 12 InCGE Caudal ganglionic eminence interneurons cluster KIAA1211 57482 29219 0.47 32.9 18.9 4.6049023314871E-102
30 12 InCGE Caudal ganglionic eminence interneurons cluster NR2F1 7025 7975 0.46 43.1 36.5 6.7768585417921E-55
30 12 InCGE Caudal ganglionic eminence interneurons cluster CXCR4 7852 2561 0.46 21.8 3.7 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster RND3 390 671 0.43 32.6 20.3 1.4181894520604E-72
30 12 InCGE Caudal ganglionic eminence interneurons cluster INA 9118 6057 0.43 28 15 2.9871934031238E-102
30 12 InCGE Caudal ganglionic eminence interneurons cluster MYCBP2 23077 23386 0.43 35.1 25.1 5.9438988342633E-61
30 12 InCGE Caudal ganglionic eminence interneurons cluster EEA1 8411 3185 0.41 26.2 15.1 2.2697134522058E-90
30 12 InCGE Caudal ganglionic eminence interneurons cluster VSTM2A 222008 28499 0.4 17.9 1.5 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster THRB 7068 11799 0.4 17.6 1.3 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster ARL4C 10123 698 0.4 35.5 24.6 1.6536379179079E-55
30 12 InCGE Caudal ganglionic eminence interneurons cluster LINC00461 645323 42810 0.39 55 51.5 3.7256462437536E-33
30 12 InCGE Caudal ganglionic eminence interneurons cluster MLLT11 10962 16997 0.38 60.8 55.3 8.5077336466818E-30
30 12 InCGE Caudal ganglionic eminence interneurons cluster HMGN2 3151 4986 0.38 38 31.9 4.3930631247253E-39
30 12 InCGE Caudal ganglionic eminence interneurons cluster PNRC1 10957 17278 0.38 30.9 20.6 1.1767531648452E-65
30 12 InCGE Caudal ganglionic eminence interneurons cluster NNAT 4826 7860 0.37 67.4 64.8 6.655177806268E-26
30 12 InCGE Caudal ganglionic eminence interneurons cluster FEZ1 9638 3659 0.37 41.9 37.7 1.1294796570586E-37
30 12 InCGE Caudal ganglionic eminence interneurons cluster PDE4DIP 9659 15580 0.36 27.3 16 6.8028533508747E-71
30 12 InCGE Caudal ganglionic eminence interneurons cluster SUB1 10923 19985 0.36 36.9 31.2 3.2819683092349E-45
30 12 InCGE Caudal ganglionic eminence interneurons cluster SP8 221833 19196 0.36 16.2 1.6 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster NSG2 51617 24955 0.36 48.3 41.8 7.9656812859938E-28
30 12 InCGE Caudal ganglionic eminence interneurons cluster CADM1 23705 5951 0.35 36.4 30.1 7.2414705175698E-38
30 12 InCGE Caudal ganglionic eminence interneurons cluster RDX 5962 9944 0.35 32.8 26.5 5.8840982540769E-42
30 12 InCGE Caudal ganglionic eminence interneurons cluster FXYD6 53826 4030 0.35 40 35.8 6.4230616332463E-37
30 12 InCGE Caudal ganglionic eminence interneurons cluster ST8SIA5 29906 17827 0.34 16.2 1.2 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster EPHA5 2044 3389 0.34 32.8 26 7.7871122327318E-38
30 12 InCGE Caudal ganglionic eminence interneurons cluster TMEM161B-AS1 100505894 43839 0.34 35 29.1 2.8445350323732E-39
30 12 InCGE Caudal ganglionic eminence interneurons cluster PAK3 5063 8592 0.34 33.4 27.4 7.012119727553E-38
30 12 InCGE Caudal ganglionic eminence interneurons cluster ZNF91 7644 13166 0.34 34.6 27.6 3.1720551970107E-38
30 12 InCGE Caudal ganglionic eminence interneurons cluster QKI 9444 21100 0.33 24.1 14.3 2.2681531621495E-63
30 12 InCGE Caudal ganglionic eminence interneurons cluster JAKMIP2 9832 29067 0.33 30.3 24 3.7015512930168E-41
30 12 InCGE Caudal ganglionic eminence interneurons cluster ELOVL6 79071 15829 0.33 23.8 15.5 1.0905135523738E-59
30 12 InCGE Caudal ganglionic eminence interneurons cluster POU3F4 5456 9217 0.33 18.2 6.3 1.9280205532954E-141
30 12 InCGE Caudal ganglionic eminence interneurons cluster NRIP3 56675 1167 0.32 13.9 1 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster UBB 7314 12463 0.32 66 65.3 7.5638352055755E-22
30 12 InCGE Caudal ganglionic eminence interneurons cluster TXN 7295 12435 0.32 37.7 35.3 1.6401692921641E-30
30 12 InCGE Caudal ganglionic eminence interneurons cluster APC 324 583 0.31 42 40.2 1.0862018414031E-23
30 12 InCGE Caudal ganglionic eminence interneurons cluster NPAS1 4861 7894 0.31 14.1 1.1 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster CAMK2N1 55450 24190 0.31 39.5 35.7 3.0063234595548E-27
30 12 InCGE Caudal ganglionic eminence interneurons cluster SLC32A1 140679 11018 0.31 14.4 1.3 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster RGS12 6002 9994 0.3 23.6 15.4 1.8660559100929E-53
30 12 InCGE Caudal ganglionic eminence interneurons cluster PRRC2C 23215 24903 0.3 46.4 45.2 2.0341080940735E-20
30 12 InCGE Caudal ganglionic eminence interneurons cluster ANKRD36C 400986 32946 0.3 46.2 44.5 2.2008564636512E-20
30 12 InCGE Caudal ganglionic eminence interneurons cluster KITLG 4254 6343 0.29 13.6 2.2 1.2982068910125E-319
30 12 InCGE Caudal ganglionic eminence interneurons cluster SCG3 29106 13707 0.29 38.8 33.7 1.5506175507471E-24
30 12 InCGE Caudal ganglionic eminence interneurons cluster MTUS1 57509 29789 0.29 16 5.3 1.7109085114038E-117
30 12 InCGE Caudal ganglionic eminence interneurons cluster RPL30 6156 10333 0.29 66.1 66.3 8.6401638021964E-19
30 12 InCGE Caudal ganglionic eminence interneurons cluster ID4 3400 5363 0.28 20.6 11.9 3.9756395117977E-39
30 12 InCGE Caudal ganglionic eminence interneurons cluster RAB3IP 117177 16508 0.28 15.1 5.6 1.8296877878955E-112
30 12 InCGE Caudal ganglionic eminence interneurons cluster FTH1 2495 3976 0.28 78.4 79.8 6.3012786153724E-18
30 12 InCGE Caudal ganglionic eminence interneurons cluster WLS 79971 30238 0.28 13.8 2.1 5.8368398809752E-268
30 12 InCGE Caudal ganglionic eminence interneurons cluster ZNF536 9745 29025 0.28 13.3 1.4 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster NRXN3 9369 8010 0.28 13.9 2 1.3343916377374E-229
30 12 InCGE Caudal ganglionic eminence interneurons cluster KLHL35 283212 26597 0.27 19.2 9.9 1.1927983835829E-57
30 12 InCGE Caudal ganglionic eminence interneurons cluster RBP1 5947 9919 0.27 18.6 8.1 4.2285364141933E-64
30 12 InCGE Caudal ganglionic eminence interneurons cluster DLX6 1750 2919 0.27 13.1 1.4 1.4591434613429E-285
30 12 InCGE Caudal ganglionic eminence interneurons cluster AKAP9 10142 379 0.26 57.8 57.8 3.4130626850919E-12
30 12 InCGE Caudal ganglionic eminence interneurons cluster POU2F1 5451 9212 0.26 16.8 8.4 1.6552632840831E-69
30 12 InCGE Caudal ganglionic eminence interneurons cluster DEK 7913 2768 0.26 38 36.7 3.6739445966109E-19
30 12 InCGE Caudal ganglionic eminence interneurons cluster CHL1 10752 1939 0.26 35.4 33.2 1.3009444074692E-17
30 12 InCGE Caudal ganglionic eminence interneurons cluster ETFB 2109 3482 0.26 17.4 8.9 3.1722186225258E-67
30 12 InCGE Caudal ganglionic eminence interneurons cluster TMSB10 9168 11879 0.26 93.9 92.6 7.7645110772609E-18
30 12 InCGE Caudal ganglionic eminence interneurons cluster TMTC4 84899 25904 0.25 15.6 8.2 6.2797905878541E-73
30 12 InCGE Caudal ganglionic eminence interneurons cluster MAGI1 9223 946 0.25 14.9 6.3 1.7686793976468E-84
30 12 InCGE Caudal ganglionic eminence interneurons cluster NAV3 89795 15998 0.25 16.8 10.4 3.9586866038965E-49
30 12 InCGE Caudal ganglionic eminence interneurons cluster GSE1 23199 28979 0.25 21.2 14.3 3.1253070125725E-39
30 12 InCGE Caudal ganglionic eminence interneurons cluster RUFY2 55680 19761 0.25 37 36 1.0637196867804E-16
30 12 InCGE Caudal ganglionic eminence interneurons cluster NES 10763 7756 0.24 20.2 13.8 8.8758666471099E-37
30 12 InCGE Caudal ganglionic eminence interneurons cluster GNG2 54331 4404 0.24 28 24.1 5.9821818114354E-25
30 12 InCGE Caudal ganglionic eminence interneurons cluster RPS29 6235 10419 0.24 76 78.1 5.5585425825789E-14
30 12 InCGE Caudal ganglionic eminence interneurons cluster TNR 7143 11953 0.24 12.2 3.2 1.6955971428859E-144
30 12 InCGE Caudal ganglionic eminence interneurons cluster PDS5B 23047 20418 0.24 25.7 22.8 7.6553275906798E-24
30 12 InCGE Caudal ganglionic eminence interneurons cluster NPAS3 64067 19311 0.24 12.6 3.5 4.3896254424397E-134
30 12 InCGE Caudal ganglionic eminence interneurons cluster RPLP2 6181 10377 0.24 71.5 73.8 2.412034856038E-13
30 12 InCGE Caudal ganglionic eminence interneurons cluster WNT5A 7474 12784 0.24 10.5 0.7 0
30 12 InCGE Caudal ganglionic eminence interneurons cluster SLAIN1 122060 26387 0.24 13 3.6 5.7521665420511E-130
30 12 InCGE Caudal ganglionic eminence interneurons cluster MIAT 440823 33425 0.24 46.2 42.6 5.3239588833417E-14
30 12 InCGE Caudal ganglionic eminence interneurons cluster PDZRN4 29951 30552 0.23 13.8 3.5 9.6000237758759E-84
30 12 InCGE Caudal ganglionic eminence interneurons cluster SOX1 6656 11189 0.23 12.9 3.6 2.5314997399962E-118
30 12 InCGE Caudal ganglionic eminence interneurons cluster HNRNPD 3184 5036 0.23 59.6 61.1 1.0574141909393E-12
30 12 InCGE Caudal ganglionic eminence interneurons cluster YTHDC1 91746 30626 0.23 45 44.8 4.0128798855467E-13
30 12 InCGE Caudal ganglionic eminence interneurons cluster HNRNPA2B1 3181 5033 0.23 81.3 81.9 1.5297406254049E-12
30 12 InCGE Caudal ganglionic eminence interneurons cluster RPS11 6205 10384 0.23 76.8 77.8 2.9406079854132E-12
30 12 InCGE Caudal ganglionic eminence interneurons cluster NFIB 4781 7785 0.23 65.8 65.9 2.8570742454861E-10
30 12 InCGE Caudal ganglionic eminence interneurons cluster RERE 473 9965 0.23 28.2 23.5 2.1547993067536E-21
30 12 InCGE Caudal ganglionic eminence interneurons cluster KMT5B 51111 24283 0.23 38.1 37.6 7.4508893110252E-14
30 12 InCGE Caudal ganglionic eminence interneurons cluster RNF180 285671 27752 0.23 15.5 9.4 9.5025361659876E-50
30 12 InCGE Caudal ganglionic eminence interneurons cluster RPL34 6164 10340 0.22 87.5 88.7 3.3615198458834E-13
30 12 InCGE Caudal ganglionic eminence interneurons cluster ATP1B1 481 804 0.22 23.4 19.3 5.0762640819495E-23
30 12 InCGE Caudal ganglionic eminence interneurons cluster SH3GLB1 51100 10833 0.22 18.5 14.1 7.9286390729686E-34
30 12 InCGE Caudal ganglionic eminence interneurons cluster PTMS 5763 9629 0.22 57 57.3 1.0495689076051E-12
30 12 InCGE Caudal ganglionic eminence interneurons cluster RASSF2 9770 9883 0.22 18.7 12.9 4.2327938905987E-36
30 12 InCGE Caudal ganglionic eminence interneurons cluster RAB8B 51762 30273 0.22 17.2 11.4 2.8960803677692E-39
30 12 InCGE Caudal ganglionic eminence interneurons cluster PRKCA 5578 9393 0.22 11 1.8 1.7777059371927E-216
30 12 InCGE Caudal ganglionic eminence interneurons cluster RBM23 55147 20155 0.22 20.5 14.9 1.353737127601E-30
30 12 InCGE Caudal ganglionic eminence interneurons cluster KMT2A 4297 7132 0.22 42.9 44.3 6.4499137343075E-12
30 12 InCGE Caudal ganglionic eminence interneurons cluster KAT6B 23522 17582 0.22 33.5 33 2.5328152910883E-14
30 12 InCGE Caudal ganglionic eminence interneurons cluster ENSG00000275131 NULL 0.22 16.3 9.4 6.1318644653473E-44
30 12 InCGE Caudal ganglionic eminence interneurons cluster U2SURP 23350 30855 0.22 42 42.7 1.2033389927759E-12
30 12 InCGE Caudal ganglionic eminence interneurons cluster RPL27A 6157 10329 0.22 74.8 77.2 3.1235132145152E-11
30 12 InCGE Caudal ganglionic eminence interneurons cluster SPEN 23013 17575 0.22 37.4 37.2 2.2689491678565E-13
30 12 InCGE Caudal ganglionic eminence interneurons cluster GAD1 2571 4092 0.22 12.6 2.6 2.894126059189E-104
30 12 InCGE Caudal ganglionic eminence interneurons cluster RPL38 6169 10349 0.22 67.5 70.3 5.6372427998646E-11
30 12 InCGE Caudal ganglionic eminence interneurons cluster CLASP1 23332 17088 0.21 15.9 9.7 1.9985006617808E-45
30 12 InCGE Caudal ganglionic eminence interneurons cluster RPL11 6135 10301 0.21 80.9 82.7 2.3447350194555E-11
30 12 InCGE Caudal ganglionic eminence interneurons cluster CHD9 80205 25701 0.21 39.1 38.1 2.7638263193466E-12
30 12 InCGE Caudal ganglionic eminence interneurons cluster LRRN3 54674 17200 0.21 14.1 8 7.298123523657E-48
30 12 InCGE Caudal ganglionic eminence interneurons cluster DPYSL3 1809 3015 0.21 53.8 53.9 1.0794928446514E-10
30 12 InCGE Caudal ganglionic eminence interneurons cluster OGA 10724 7056 0.21 48.6 49.7 7.9046975929632E-11
30 12 InCGE Caudal ganglionic eminence interneurons cluster SMARCA5 8467 11101 0.21 40.3 40.3 1.3049934319776E-11
30 12 InCGE Caudal ganglionic eminence interneurons cluster SACS 26278 10519 0.2 16.2 11 3.6783513615103E-33
30 12 InCGE Caudal ganglionic eminence interneurons cluster ARID1B 57492 18040 0.2 16.5 11 1.0260905581029E-34
30 12 InCGE Caudal ganglionic eminence interneurons cluster SMARCD1 6602 11106 0.2 18.1 12.8 1.025900847185E-29
30 12 InCGE Caudal ganglionic eminence interneurons cluster RPL9 6133 10369 0.2 68.5 71 1.2977764758624E-9
30 12 InCGE Caudal ganglionic eminence interneurons cluster ZNF711 7552 13128 0.2 44.8 44.9 4.8203483464428E-10
30 12 InCGE Caudal ganglionic eminence interneurons cluster RPS27 6232 10416 0.2 77 80.8 1.6363091973432E-9
30 12 InCGE Caudal ganglionic eminence interneurons cluster CRMP1 1400 2365 0.2 39.3 39.2 1.1294505632176E-11
30 12 InCGE Caudal ganglionic eminence interneurons cluster TERF2IP 54386 19246 0.2 57.7 60 6.5341361866201E-9