Marker Genes

Dataset: A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation

  • tissue: Neocortex
  • ontology: Brain
  • genotype: -
  • stage:
  • treatment condition: WT
  • cell/nucleus: Cells
  • pmid: 31303374
  • subset name: cluster
  • total genes: Not reported
  • clustering: Seurat
  • pseudotime: Monocle 2
  • link:

Rows:80
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
30 0 ExN Newborn excitatory neurons cluster ENC1 8507 3345 1.15 73.3 55.2 0
30 0 ExN Newborn excitatory neurons cluster SOX4 6659 11200 0.82 88.1 80.1 0
30 0 ExN Newborn excitatory neurons cluster MEIS2 4212 7001 0.81 63.5 52.2 0
30 0 ExN Newborn excitatory neurons cluster NEUROD6 63974 13804 0.81 72.1 59.7 0
30 0 ExN Newborn excitatory neurons cluster SLA 6503 10902 0.73 63.9 52.5 0
30 0 ExN Newborn excitatory neurons cluster EZR 7430 12691 0.71 58.8 48.5 0
30 0 ExN Newborn excitatory neurons cluster ROBO2 6092 10250 0.69 49.6 37.8 0
30 0 ExN Newborn excitatory neurons cluster SOX11 6664 11191 0.68 85.9 80.4 0
30 0 ExN Newborn excitatory neurons cluster GRIA2 2891 4572 0.62 54.8 45.1 0
30 0 ExN Newborn excitatory neurons cluster POU3F2 5454 9215 0.6 61.5 55.3 1.08579425300862e-300
30 0 ExN Newborn excitatory neurons cluster MLLT3 4300 7136 0.57 52.5 44.4 2.41914750117218e-313
30 0 ExN Newborn excitatory neurons cluster NFIB 4781 7785 0.56 69.6 65.9 5.60676786488967e-261
30 0 ExN Newborn excitatory neurons cluster DDAH2 23564 2716 0.54 57.4 52.1 1.29252735376907e-284
30 0 ExN Newborn excitatory neurons cluster NEUROD2 4761 7763 0.49 58.1 50.2 1.98610014211426e-207
30 0 ExN Newborn excitatory neurons cluster SDCBP 6386 10662 0.42 34.2 26.7 7.97146717965793e-297
30 0 ExN Newborn excitatory neurons cluster EPHB6 2051 3396 0.42 26.7 17 0
30 0 ExN Newborn excitatory neurons cluster ZNF704 619279 32291 0.4 35.1 28 7.50610454696623e-214
30 0 ExN Newborn excitatory neurons cluster SEMA3C 10512 10725 0.38 31.2 23.4 4.09944681257285e-249
30 0 ExN Newborn excitatory neurons cluster KCNQ3 3786 6297 0.38 25 16.4 8.03811209319791e-318
30 0 ExN Newborn excitatory neurons cluster LRP8 7804 6700 0.37 29.8 22.4 3.05452600687423e-249
30 0 ExN Newborn excitatory neurons cluster MIR100HG 399959 39522 0.37 51.6 49.3 4.32938903508797e-134
30 0 ExN Newborn excitatory neurons cluster PALMD 54873 15846 0.36 27.1 20.6 5.72632333421818e-230
30 0 ExN Newborn excitatory neurons cluster H3F3B 3021 4765 0.35 77 76.8 4.29624427760321e-115
30 0 ExN Newborn excitatory neurons cluster LINC01551 387978 19828 0.34 37 33.2 7.46110724776973e-155
30 0 ExN Newborn excitatory neurons cluster PRKX 5613 9441 0.34 23.6 15.2 1.00031383127757e-284
30 0 ExN Newborn excitatory neurons cluster RPL34 6164 10340 0.33 87.7 88.7 1.97371455807454e-124
30 0 ExN Newborn excitatory neurons cluster HS3ST1 9957 5194 0.32 19.3 10.7 0
30 0 ExN Newborn excitatory neurons cluster RPL39 6170 10350 0.32 63.6 64.7 1.09437747630581e-97
30 0 ExN Newborn excitatory neurons cluster NTM 50863 17941 0.32 31.8 27.6 6.44514778737317e-146
30 0 ExN Newborn excitatory neurons cluster CPE 1363 2303 0.31 48.5 47.5 8.21948253852974e-103
30 0 ExN Newborn excitatory neurons cluster IP6K2 51447 17313 0.3 39.8 36.9 1.21626479739381e-114
30 0 ExN Newborn excitatory neurons cluster COX1 4512 7419 0.29 88.6 89.8 3.22527502211257e-101
30 0 ExN Newborn excitatory neurons cluster PLXNA2 5362 9100 0.29 32.7 28.4 9.165292938803e-131
30 0 ExN Newborn excitatory neurons cluster NRP1 8829 8004 0.29 15.8 7.1 0
30 0 ExN Newborn excitatory neurons cluster COX3 4514 7422 0.29 83.4 85.4 1.01375618367981e-88
30 0 ExN Newborn excitatory neurons cluster RPL10 6134 10298 0.29 83.9 84.8 8.27830642749737e-94
30 0 ExN Newborn excitatory neurons cluster FAM126A 84668 24587 0.29 22.5 16.7 3.35356924178578e-204
30 0 ExN Newborn excitatory neurons cluster CLMP 79827 24039 0.29 32 27.8 2.44836704463746e-116
30 0 ExN Newborn excitatory neurons cluster RASD1 51655 15828 0.29 14.6 6.2 0
30 0 ExN Newborn excitatory neurons cluster HES6 55502 18254 0.28 33.3 28.6 5.55300501809063e-109
30 0 ExN Newborn excitatory neurons cluster PANTR1 100506421 49513 0.28 56.6 55.2 1.81304396566826e-70
30 0 ExN Newborn excitatory neurons cluster TUBA1A 7846 20766 0.28 95 94.2 3.03536635744296e-95
30 0 ExN Newborn excitatory neurons cluster SORBS2 8470 24098 0.27 23.4 17.9 7.07452897707186e-159
30 0 ExN Newborn excitatory neurons cluster RPS11 6205 10384 0.27 75.5 77.8 5.43396698714348e-72
30 0 ExN Newborn excitatory neurons cluster GOLGA8A 23015 31972 0.26 24.4 20 1.06424662729858e-151
30 0 ExN Newborn excitatory neurons cluster RPS27 6232 10416 0.26 79 80.8 1.96491130827327e-70
30 0 ExN Newborn excitatory neurons cluster PAG1 55824 30043 0.26 17.2 10.9 9.28190098550573e-243
30 0 ExN Newborn excitatory neurons cluster EEF1A1 1915 3189 0.26 80.3 83.1 1.5824416662892e-73
30 0 ExN Newborn excitatory neurons cluster CD24 100133941 1645 0.26 56.4 55.6 8.68438967278758e-64
30 0 ExN Newborn excitatory neurons cluster DOK6 220164 28301 0.25 17.9 12.3 8.43994445948859e-205
30 0 ExN Newborn excitatory neurons cluster OCIAD2 132299 28685 0.25 32.7 29.8 1.02005262723286e-94
30 0 ExN Newborn excitatory neurons cluster SLC17A6 57084 16703 0.25 15.3 8.4 5.9932206676731e-264
30 0 ExN Newborn excitatory neurons cluster UNC5D 137970 18634 0.25 17 10.7 8.924830949077e-229
30 0 ExN Newborn excitatory neurons cluster HNRNPA1 3178 5031 0.25 74.1 77 3.59998201980658e-61
30 0 ExN Newborn excitatory neurons cluster POU3F3 5455 9216 0.25 42.7 43.2 3.65528896800044e-72
30 0 ExN Newborn excitatory neurons cluster ST6GAL2 84620 10861 0.24 16.2 10 1.3014813397975e-227
30 0 ExN Newborn excitatory neurons cluster PTMA 5757 9623 0.24 88.6 89.8 8.95475400619386e-69
30 0 ExN Newborn excitatory neurons cluster NREP 9315 16834 0.24 71 70.6 3.08420832815238e-50
30 0 ExN Newborn excitatory neurons cluster STMN2 11075 10577 0.24 84.3 77.6 4.8434440479605e-36
30 0 ExN Newborn excitatory neurons cluster CHD3 1107 1918 0.24 57.1 58.2 6.81388975120784e-52
30 0 ExN Newborn excitatory neurons cluster ZNF608 57507 29238 0.24 37.4 35.5 8.28704174567467e-67
30 0 ExN Newborn excitatory neurons cluster CCND2 894 1583 0.23 51.4 51.9 1.63799298792963e-50
30 0 ExN Newborn excitatory neurons cluster PHF20L1 51105 24280 0.23 32.7 31.8 1.24825878937993e-73
30 0 ExN Newborn excitatory neurons cluster BTG1 694 1130 0.23 33.2 29.5 8.36745996143865e-76
30 0 ExN Newborn excitatory neurons cluster GNG3 2785 4405 0.22 21.1 17.5 5.15765965952549e-127
30 0 ExN Newborn excitatory neurons cluster RPS23 6228 10410 0.22 74 77 8.4858983101068e-50
30 0 ExN Newborn excitatory neurons cluster BICD1 636 1049 0.22 34.2 34.6 5.6625775681347e-63
30 0 ExN Newborn excitatory neurons cluster TUBB 203068 20778 0.22 81 82.2 1.16416798799987e-47
30 0 ExN Newborn excitatory neurons cluster NRN1 51299 17972 0.22 15.2 9.5 1.91866900210823e-182
30 0 ExN Newborn excitatory neurons cluster BCL11B 64919 13222 0.22 20.4 15.4 1.94047098088338e-111
30 0 ExN Newborn excitatory neurons cluster TTC28 23331 29179 0.22 21.8 18.1 1.02202361853137e-113
30 0 ExN Newborn excitatory neurons cluster RPS15A 6210 10389 0.21 67.4 71 2.45209507153497e-47
30 0 ExN Newborn excitatory neurons cluster SRGAP1 57522 17382 0.21 42.1 42.3 1.19264653477248e-48
30 0 ExN Newborn excitatory neurons cluster EPHA5 2044 3389 0.21 28.4 26 2.06397444278331e-70
30 0 ExN Newborn excitatory neurons cluster RPL11 6135 10301 0.21 79.5 82.7 3.9274896987561e-47
30 0 ExN Newborn excitatory neurons cluster DPY19L1 23333 22205 0.2 13.4 8 7.83305967678093e-220
30 0 ExN Newborn excitatory neurons cluster SMARCD3 6604 11108 0.2 21.8 18.2 9.16719370249206e-99
30 0 ExN Newborn excitatory neurons cluster RPS21 6227 10409 0.2 62.6 65.8 1.84890987731131e-42
30 0 ExN Newborn excitatory neurons cluster RPL32 6161 10336 0.2 78.6 81.4 5.40414504576182e-42
30 0 ExN Newborn excitatory neurons cluster GNG4 2786 4407 0.2 16.8 12.9 1.34395342590654e-125