Marker Genes
Dataset: Novel Human Kidney Cell Subsets Identified by Mux-Seq
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Adult
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 9000000002
- subset name: all
- total genes: 33694
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.biorxiv.org/content/10.1101/2020.03.02.973925v1.full
Rows:83
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
110 | 9 | IC 2 | all | SPINK1 | 6690 | 11244 | 2.98 | 0.61 | 0.08 | 0 | 0 | |
110 | 9 | IC 2 | all | ATP6V1G3 | 127124 | 18265 | 1.85 | 0.5 | 0.06 | 0 | 0 | |
110 | 9 | IC 2 | all | SLC26A7 | 115111 | 14467 | 1.68 | 0.43 | 0.07 | 0 | 0 | |
110 | 9 | IC 2 | all | SLC4A1 | 6521 | 11027 | 1.48 | 0.35 | 0.04 | 0 | 0 | |
110 | 9 | IC 2 | all | ATP6V0D2 | 245972 | 18266 | 1.32 | 0.37 | 0.07 | 0 | 0 | |
110 | 9 | IC 2 | all | ADGRF5 | 221395 | 19030 | 1.27 | 0.44 | 0.14 | 0 | 0 | |
110 | 9 | IC 2 | all | TMEM213 | 155006 | 27220 | 1.2 | 0.41 | 0.16 | 8.32e-237 | 2.8e-232 | |
110 | 9 | IC 2 | all | TMEM101 | 84336 | 28653 | 1.1 | 0.3 | 0.1 | 2.87e-186 | 9.66e-182 | |
110 | 9 | IC 2 | all | ATP6AP2 | 10159 | 18305 | 1.02 | 0.45 | 0.28 | 1.83e-132 | 6.16e-128 | |
110 | 9 | IC 2 | all | C12orf75 | 387882 | 35164 | 1 | 0.5 | 0.31 | 1.19e-154 | 4.02e-150 | |
110 | 9 | IC 2 | all | SMIM24 | 284422 | 37244 | 0.89 | 0.47 | 0.29 | 8e-127 | 2.7e-122 | |
110 | 9 | IC 2 | all | PTGER3 | 5733 | 9595 | 0.89 | 0.35 | 0.16 | 5.51e-123 | 1.86e-118 | |
110 | 9 | IC 2 | all | APOE | 348 | 613 | 0.84 | 0.41 | 0.22 | 2.73e-119 | 9.19e-115 | |
110 | 9 | IC 2 | all | ITGA6 | 3655 | 6142 | 0.84 | 0.28 | 0.13 | 9.59e-104 | 3.23e-99 | |
110 | 9 | IC 2 | all | PLAAT4 | 5920 | 9869 | 0.83 | 0.29 | 0.17 | 8.09e-70 | 2.73e-65 | |
110 | 9 | IC 2 | all | ATP6V0B | 533 | 861 | 0.82 | 0.51 | 0.38 | 3.86e-98 | 1.3e-93 | |
110 | 9 | IC 2 | all | DSG2 | 1829 | 3049 | 0.76 | 0.27 | 0.15 | 2.4e-63 | 8.08e-59 | |
110 | 9 | IC 2 | all | ATP6V1B1 | 525 | 853 | 0.76 | 0.25 | 0.11 | 2.63e-93 | 8.85e-89 | |
110 | 9 | IC 2 | all | COX7A1 | 1346 | 2287 | 0.75 | 0.33 | 0.24 | 1.12e-40 | 3.77e-36 | |
110 | 9 | IC 2 | all | ARHGAP18 | 93663 | 21035 | 0.75 | 0.25 | 0.13 | 6.53e-65 | 2.2e-60 | |
110 | 9 | IC 2 | all | ATP6V1A | 523 | 851 | 0.73 | 0.35 | 0.23 | 1.67e-59 | 5.61e-55 | |
110 | 9 | IC 2 | all | LITAF | 9516 | 16841 | 0.71 | 0.33 | 0.24 | 6.03e-39 | 2.03e-34 | |
110 | 9 | IC 2 | all | CKB | 1152 | 1991 | 0.6 | 0.36 | 0.28 | 1.15e-34 | 3.86e-30 | |
110 | 9 | IC 2 | all | RTN4 | 57142 | 14085 | 0.59 | 0.53 | 0.51 | 6.77e-45 | 2.28e-40 | |
110 | 9 | IC 2 | all | ATP5F1E | 514 | 838 | 0.57 | 0.84 | 0.81 | 4.63e-154 | 1.56e-149 | |
110 | 9 | IC 2 | all | MSI2 | 124540 | 18585 | 0.56 | 0.35 | 0.3 | 2.38e-21 | 8.02e-17 | |
110 | 9 | IC 2 | all | UQCRQ | 27089 | 29594 | 0.56 | 0.69 | 0.64 | 6.1e-99 | 2.06e-94 | |
110 | 9 | IC 2 | all | LGALS3 | 3958 | 6563 | 0.55 | 0.29 | 0.23 | 1.48e-20 | 5e-16 | |
110 | 9 | IC 2 | all | CA12 | 771 | 1371 | 0.55 | 0.41 | 0.31 | 1.35e-39 | 4.56e-35 | |
110 | 9 | IC 2 | all | COX7B | 1349 | 2291 | 0.54 | 0.65 | 0.6 | 1.82e-80 | 6.13e-76 | |
110 | 9 | IC 2 | all | CHCHD10 | 400916 | 15559 | 0.53 | 0.41 | 0.36 | 1.22e-27 | 4.12e-23 | |
110 | 9 | IC 2 | all | ACAT1 | 38 | 93 | 0.52 | 0.25 | 0.22 | 7.21e-11 | 2.43e-06 | |
110 | 9 | IC 2 | all | COX17 | 10063 | 2264 | 0.5 | 0.46 | 0.44 | 1.52e-21 | 5.11e-17 | |
110 | 9 | IC 2 | all | MIF | 4282 | 7097 | 0.49 | 0.5 | 0.5 | 1.23e-23 | 4.16e-19 | |
110 | 9 | IC 2 | all | SCIN | 85477 | 21695 | 0.47 | 0.3 | 0.25 | 1.65e-18 | 5.55e-14 | |
110 | 9 | IC 2 | all | COX6C | 1345 | 2285 | 0.46 | 0.6 | 0.6 | 2.03e-42 | 6.83e-38 | |
110 | 9 | IC 2 | all | UQCR10 | 29796 | 30863 | 0.45 | 0.54 | 0.51 | 8.76e-33 | 2.95e-28 | |
110 | 9 | IC 2 | all | COX6A1 | 1337 | 2277 | 0.43 | 0.53 | 0.53 | 2.36e-30 | 7.95e-26 | |
110 | 9 | IC 2 | all | COX5A | 9377 | 2267 | 0.43 | 0.3 | 0.3 | 7.64e-06 | 0.25 | |
110 | 9 | IC 2 | all | MTRNR2L12 | 100463498 | 37169 | 0.42 | 0.46 | 0.45 | 2.31e-11 | 7.8e-07 | |
110 | 9 | IC 2 | all | CD9 | 928 | 1709 | 0.42 | 0.56 | 0.56 | 6.61e-26 | 2.23e-21 | |
110 | 9 | IC 2 | all | RPL37A | 6168 | 10348 | 0.42 | 0.88 | 0.85 | 7.79e-114 | 2.63e-109 | |
110 | 9 | IC 2 | all | ATP5MD | 84833 | 30889 | 0.41 | 0.6 | 0.61 | 1.46e-36 | 4.91e-32 | |
110 | 9 | IC 2 | all | BSG | 682 | 1116 | 0.4 | 0.38 | 0.4 | 6.18e-07 | 0.02 | |
110 | 9 | IC 2 | all | SELENOP | 6414 | 10751 | 0.4 | 0.34 | 0.33 | 4.95e-06 | 0.16 | |
110 | 9 | IC 2 | all | ATP5MPL | 9556 | 1188 | 0.4 | 0.57 | 0.57 | 2.15e-30 | 7.25e-26 | |
110 | 9 | IC 2 | all | ATP6V1F | 9296 | 16832 | 0.4 | 0.34 | 0.35 | 2.21e-06 | 0.07 | |
110 | 9 | IC 2 | all | NDUFB1 | 4707 | 7695 | 0.39 | 0.58 | 0.57 | 2.67e-30 | 8.99e-26 | |
110 | 9 | IC 2 | all | SLC25A5 | 292 | 10991 | 0.39 | 0.32 | 0.33 | 0.000450605157794 | 1 | |
110 | 9 | IC 2 | all | ATP5MC1 | 516 | 841 | 0.38 | 0.35 | 0.35 | 3.19e-06 | 0.1 | |
110 | 9 | IC 2 | all | ATP5PD | 10476 | 845 | 0.38 | 0.35 | 0.37 | 0.000159800688612 | 1 | |
110 | 9 | IC 2 | all | PFN2 | 5217 | 8882 | 0.38 | 0.26 | 0.24 | 2.29e-05 | 0.77 | |
110 | 9 | IC 2 | all | COX7C | 1350 | 2292 | 0.38 | 0.79 | 0.79 | 5.22e-74 | 1.76e-69 | |
110 | 9 | IC 2 | all | COX7A2 | 1347 | 2288 | 0.38 | 0.57 | 0.6 | 1.16e-26 | 3.91e-22 | |
110 | 9 | IC 2 | all | SLIRP | 81892 | 20495 | 0.37 | 0.37 | 0.38 | 3.34e-06 | 0.11 | |
110 | 9 | IC 2 | all | CYCS | 54205 | 19986 | 0.36 | 0.36 | 0.36 | 4.44e-06 | 0.14 | |
110 | 9 | IC 2 | all | NDUFA1 | 4694 | 7683 | 0.35 | 0.59 | 0.61 | 1.06e-23 | 3.57e-19 | |
110 | 9 | IC 2 | all | IGFBP5 | 3488 | 5474 | 0.35 | 0.54 | 0.27 | 1.18e-162 | 3.98e-158 | |
110 | 9 | IC 2 | all | ATP8 | 4509 | 7415 | 0.34 | 0.52 | 0.52 | 1.55e-14 | 5.21e-10 | |
110 | 9 | IC 2 | all | NDUFA3 | 4696 | 7686 | 0.34 | 0.45 | 0.48 | 8.14e-08 | 0.002742134369911 | |
110 | 9 | IC 2 | all | NDUFA6 | 4700 | 7690 | 0.33 | 0.29 | 0.3 | 0.008503242176951 | 1 | |
110 | 9 | IC 2 | all | FXYD2 | 486 | 4026 | 0.32 | 0.67 | 0.59 | 8.08e-31 | 2.72e-26 | |
110 | 9 | IC 2 | all | NDUFS5 | 4725 | 7712 | 0.32 | 0.48 | 0.5 | 3.8e-10 | 1.28e-05 | |
110 | 9 | IC 2 | all | COX4I1 | 1327 | 2265 | 0.31 | 0.57 | 0.62 | 3.8e-18 | 1.28e-13 | |
110 | 9 | IC 2 | all | RPL6 | 6128 | 10362 | 0.31 | 0.72 | 0.73 | 9.57e-36 | 3.22e-31 | |
110 | 9 | IC 2 | all | RPS27 | 6232 | 10416 | 0.31 | 0.94 | 0.94 | 1.33e-74 | 4.49e-70 | |
110 | 9 | IC 2 | all | ATP5ME | 521 | 846 | 0.31 | 0.73 | 0.76 | 4.33e-40 | 1.46e-35 | |
110 | 9 | IC 2 | all | NDUFB2 | 4708 | 7697 | 0.31 | 0.56 | 0.58 | 8.67e-18 | 2.92e-13 | |
110 | 9 | IC 2 | all | TFCP2L1 | 29842 | 17925 | 0.3 | 0.27 | 0.26 | 0.003629966921511 | 1 | |
110 | 9 | IC 2 | all | RPL21 | 6144 | 10313 | 0.3 | 0.89 | 0.89 | 1.98e-53 | 6.66e-49 | |
110 | 9 | IC 2 | all | ND4L | 4539 | 7460 | 0.3 | 0.99 | 0.99 | 1.52e-99 | 5.13e-95 | |
110 | 9 | IC 2 | all | UQCR11 | 10975 | 30862 | 0.29 | 0.55 | 0.59 | 5.32e-14 | 1.79e-09 | |
110 | 9 | IC 2 | all | RPL36A | 6173 | 10359 | 0.28 | 0.46 | 0.5 | 0.000980748954454 | 1 | |
110 | 9 | IC 2 | all | ATP5MG | 10632 | 14247 | 0.27 | 0.57 | 0.62 | 2.45e-14 | 8.26e-10 | |
110 | 9 | IC 2 | all | COX6B1 | 1340 | 2280 | 0.27 | 0.57 | 0.62 | 1.28e-13 | 4.31e-09 | |
110 | 9 | IC 2 | all | RPL36 | 25873 | 13631 | 0.27 | 0.84 | 0.85 | 1.9e-47 | 6.4e-43 | |
110 | 9 | IC 2 | all | COX8A | 1351 | 2294 | 0.27 | 0.46 | 0.5 | 7.71e-06 | 0.25 | |
110 | 9 | IC 2 | all | NDUFA4 | 4697 | 7687 | 0.27 | 0.68 | 0.71 | 2.5e-25 | 8.44e-21 | |
110 | 9 | IC 2 | all | RPL31 | 6160 | 10334 | 0.26 | 0.75 | 0.76 | 1.71e-32 | 5.76e-28 | |
110 | 9 | IC 2 | all | COX5B | 1329 | 2269 | 0.26 | 0.52 | 0.58 | 1.53e-07 | 0.005157551409899 | |
110 | 9 | IC 2 | all | NDUFC1 | 4717 | 7705 | 0.26 | 0.43 | 0.47 | 0.003234653498971 | 1 | |
110 | 9 | IC 2 | all | UQCRB | 7381 | 12582 | 0.26 | 0.61 | 0.66 | 1.07e-15 | 3.6e-11 | |
110 | 9 | IC 2 | all | ND3 | 4537 | 7458 | 0.25 | 1 | 1 | 3.38e-105 | 1.14e-100 |