Marker Genes
Dataset: Novel Human Kidney Cell Subsets Identified by Mux-Seq
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Adult
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 9000000002
- subset name: all
- total genes: 33694
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.biorxiv.org/content/10.1101/2020.03.02.973925v1.full
Rows:83
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110 | 9 | IC 2 | all | SPINK1 | 6690 | 11244 | 2.98 | 0.61 | 0.08 | 0 | 0 | |
| 110 | 9 | IC 2 | all | ATP6V1G3 | 127124 | 18265 | 1.85 | 0.5 | 0.06 | 0 | 0 | |
| 110 | 9 | IC 2 | all | SLC26A7 | 115111 | 14467 | 1.68 | 0.43 | 0.07 | 0 | 0 | |
| 110 | 9 | IC 2 | all | SLC4A1 | 6521 | 11027 | 1.48 | 0.35 | 0.04 | 0 | 0 | |
| 110 | 9 | IC 2 | all | ATP6V0D2 | 245972 | 18266 | 1.32 | 0.37 | 0.07 | 0 | 0 | |
| 110 | 9 | IC 2 | all | ADGRF5 | 221395 | 19030 | 1.27 | 0.44 | 0.14 | 0 | 0 | |
| 110 | 9 | IC 2 | all | TMEM213 | 155006 | 27220 | 1.2 | 0.41 | 0.16 | 8.32E-237 | 2.8E-232 | |
| 110 | 9 | IC 2 | all | TMEM101 | 84336 | 28653 | 1.1 | 0.3 | 0.1 | 2.87E-186 | 9.66E-182 | |
| 110 | 9 | IC 2 | all | ATP6AP2 | 10159 | 18305 | 1.02 | 0.45 | 0.28 | 1.83E-132 | 6.16E-128 | |
| 110 | 9 | IC 2 | all | C12orf75 | 387882 | 35164 | 1 | 0.5 | 0.31 | 1.19E-154 | 4.02E-150 | |
| 110 | 9 | IC 2 | all | SMIM24 | 284422 | 37244 | 0.89 | 0.47 | 0.29 | 8.0E-127 | 2.7E-122 | |
| 110 | 9 | IC 2 | all | PTGER3 | 5733 | 9595 | 0.89 | 0.35 | 0.16 | 5.51E-123 | 1.86E-118 | |
| 110 | 9 | IC 2 | all | APOE | 348 | 613 | 0.84 | 0.41 | 0.22 | 2.73E-119 | 9.19E-115 | |
| 110 | 9 | IC 2 | all | ITGA6 | 3655 | 6142 | 0.84 | 0.28 | 0.13 | 9.59E-104 | 3.23E-99 | |
| 110 | 9 | IC 2 | all | PLAAT4 | 5920 | 9869 | 0.83 | 0.29 | 0.17 | 8.09E-70 | 2.73E-65 | |
| 110 | 9 | IC 2 | all | ATP6V0B | 533 | 861 | 0.82 | 0.51 | 0.38 | 3.86E-98 | 1.3E-93 | |
| 110 | 9 | IC 2 | all | DSG2 | 1829 | 3049 | 0.76 | 0.27 | 0.15 | 2.4E-63 | 8.08E-59 | |
| 110 | 9 | IC 2 | all | ATP6V1B1 | 525 | 853 | 0.76 | 0.25 | 0.11 | 2.63E-93 | 8.85E-89 | |
| 110 | 9 | IC 2 | all | COX7A1 | 1346 | 2287 | 0.75 | 0.33 | 0.24 | 1.12E-40 | 3.77E-36 | |
| 110 | 9 | IC 2 | all | ARHGAP18 | 93663 | 21035 | 0.75 | 0.25 | 0.13 | 6.53E-65 | 2.2E-60 | |
| 110 | 9 | IC 2 | all | ATP6V1A | 523 | 851 | 0.73 | 0.35 | 0.23 | 1.67E-59 | 5.61E-55 | |
| 110 | 9 | IC 2 | all | LITAF | 9516 | 16841 | 0.71 | 0.33 | 0.24 | 6.03E-39 | 2.03E-34 | |
| 110 | 9 | IC 2 | all | CKB | 1152 | 1991 | 0.6 | 0.36 | 0.28 | 1.15E-34 | 3.86E-30 | |
| 110 | 9 | IC 2 | all | RTN4 | 57142 | 14085 | 0.59 | 0.53 | 0.51 | 6.77E-45 | 2.28E-40 | |
| 110 | 9 | IC 2 | all | ATP5F1E | 514 | 838 | 0.57 | 0.84 | 0.81 | 4.63E-154 | 1.56E-149 | |
| 110 | 9 | IC 2 | all | MSI2 | 124540 | 18585 | 0.56 | 0.35 | 0.3 | 2.38E-21 | 8.02E-17 | |
| 110 | 9 | IC 2 | all | UQCRQ | 27089 | 29594 | 0.56 | 0.69 | 0.64 | 6.1E-99 | 2.06E-94 | |
| 110 | 9 | IC 2 | all | LGALS3 | 3958 | 6563 | 0.55 | 0.29 | 0.23 | 1.48E-20 | 5.0E-16 | |
| 110 | 9 | IC 2 | all | CA12 | 771 | 1371 | 0.55 | 0.41 | 0.31 | 1.35E-39 | 4.56E-35 | |
| 110 | 9 | IC 2 | all | COX7B | 1349 | 2291 | 0.54 | 0.65 | 0.6 | 1.82E-80 | 6.13E-76 | |
| 110 | 9 | IC 2 | all | CHCHD10 | 400916 | 15559 | 0.53 | 0.41 | 0.36 | 1.22E-27 | 4.12E-23 | |
| 110 | 9 | IC 2 | all | ACAT1 | 38 | 93 | 0.52 | 0.25 | 0.22 | 7.21E-11 | 2.43E-6 | |
| 110 | 9 | IC 2 | all | COX17 | 10063 | 2264 | 0.5 | 0.46 | 0.44 | 1.52E-21 | 5.11E-17 | |
| 110 | 9 | IC 2 | all | MIF | 4282 | 7097 | 0.49 | 0.5 | 0.5 | 1.23E-23 | 4.16E-19 | |
| 110 | 9 | IC 2 | all | SCIN | 85477 | 21695 | 0.47 | 0.3 | 0.25 | 1.65E-18 | 5.55E-14 | |
| 110 | 9 | IC 2 | all | COX6C | 1345 | 2285 | 0.46 | 0.6 | 0.6 | 2.03E-42 | 6.83E-38 | |
| 110 | 9 | IC 2 | all | UQCR10 | 29796 | 30863 | 0.45 | 0.54 | 0.51 | 8.76E-33 | 2.95E-28 | |
| 110 | 9 | IC 2 | all | COX6A1 | 1337 | 2277 | 0.43 | 0.53 | 0.53 | 2.36E-30 | 7.95E-26 | |
| 110 | 9 | IC 2 | all | COX5A | 9377 | 2267 | 0.43 | 0.3 | 0.3 | 7.64E-6 | 0.25 | |
| 110 | 9 | IC 2 | all | MTRNR2L12 | 100463498 | 37169 | 0.42 | 0.46 | 0.45 | 2.31E-11 | 7.8E-7 | |
| 110 | 9 | IC 2 | all | CD9 | 928 | 1709 | 0.42 | 0.56 | 0.56 | 6.61E-26 | 2.23E-21 | |
| 110 | 9 | IC 2 | all | RPL37A | 6168 | 10348 | 0.42 | 0.88 | 0.85 | 7.79E-114 | 2.63E-109 | |
| 110 | 9 | IC 2 | all | ATP5MD | 84833 | 30889 | 0.41 | 0.6 | 0.61 | 1.46E-36 | 4.91E-32 | |
| 110 | 9 | IC 2 | all | BSG | 682 | 1116 | 0.4 | 0.38 | 0.4 | 6.18E-7 | 0.02 | |
| 110 | 9 | IC 2 | all | SELENOP | 6414 | 10751 | 0.4 | 0.34 | 0.33 | 4.95E-6 | 0.16 | |
| 110 | 9 | IC 2 | all | ATP5MPL | 9556 | 1188 | 0.4 | 0.57 | 0.57 | 2.15E-30 | 7.25E-26 | |
| 110 | 9 | IC 2 | all | ATP6V1F | 9296 | 16832 | 0.4 | 0.34 | 0.35 | 2.21E-6 | 0.07 | |
| 110 | 9 | IC 2 | all | NDUFB1 | 4707 | 7695 | 0.39 | 0.58 | 0.57 | 2.67E-30 | 8.99E-26 | |
| 110 | 9 | IC 2 | all | SLC25A5 | 292 | 10991 | 0.39 | 0.32 | 0.33 | 0.000450605157794 | 1 | |
| 110 | 9 | IC 2 | all | ATP5MC1 | 516 | 841 | 0.38 | 0.35 | 0.35 | 3.19E-6 | 0.1 | |
| 110 | 9 | IC 2 | all | ATP5PD | 10476 | 845 | 0.38 | 0.35 | 0.37 | 0.000159800688612 | 1 | |
| 110 | 9 | IC 2 | all | PFN2 | 5217 | 8882 | 0.38 | 0.26 | 0.24 | 2.29E-5 | 0.77 | |
| 110 | 9 | IC 2 | all | COX7C | 1350 | 2292 | 0.38 | 0.79 | 0.79 | 5.22E-74 | 1.76E-69 | |
| 110 | 9 | IC 2 | all | COX7A2 | 1347 | 2288 | 0.38 | 0.57 | 0.6 | 1.16E-26 | 3.91E-22 | |
| 110 | 9 | IC 2 | all | SLIRP | 81892 | 20495 | 0.37 | 0.37 | 0.38 | 3.34E-6 | 0.11 | |
| 110 | 9 | IC 2 | all | CYCS | 54205 | 19986 | 0.36 | 0.36 | 0.36 | 4.44E-6 | 0.14 | |
| 110 | 9 | IC 2 | all | NDUFA1 | 4694 | 7683 | 0.35 | 0.59 | 0.61 | 1.06E-23 | 3.57E-19 | |
| 110 | 9 | IC 2 | all | IGFBP5 | 3488 | 5474 | 0.35 | 0.54 | 0.27 | 1.18E-162 | 3.98E-158 | |
| 110 | 9 | IC 2 | all | ATP8 | 4509 | 7415 | 0.34 | 0.52 | 0.52 | 1.55E-14 | 5.21E-10 | |
| 110 | 9 | IC 2 | all | NDUFA3 | 4696 | 7686 | 0.34 | 0.45 | 0.48 | 8.14E-8 | 0.002742134369911 | |
| 110 | 9 | IC 2 | all | NDUFA6 | 4700 | 7690 | 0.33 | 0.29 | 0.3 | 0.008503242176951 | 1 | |
| 110 | 9 | IC 2 | all | FXYD2 | 486 | 4026 | 0.32 | 0.67 | 0.59 | 8.08E-31 | 2.72E-26 | |
| 110 | 9 | IC 2 | all | NDUFS5 | 4725 | 7712 | 0.32 | 0.48 | 0.5 | 3.8E-10 | 1.28E-5 | |
| 110 | 9 | IC 2 | all | COX4I1 | 1327 | 2265 | 0.31 | 0.57 | 0.62 | 3.8E-18 | 1.28E-13 | |
| 110 | 9 | IC 2 | all | RPL6 | 6128 | 10362 | 0.31 | 0.72 | 0.73 | 9.57E-36 | 3.22E-31 | |
| 110 | 9 | IC 2 | all | RPS27 | 6232 | 10416 | 0.31 | 0.94 | 0.94 | 1.33E-74 | 4.49E-70 | |
| 110 | 9 | IC 2 | all | ATP5ME | 521 | 846 | 0.31 | 0.73 | 0.76 | 4.33E-40 | 1.46E-35 | |
| 110 | 9 | IC 2 | all | NDUFB2 | 4708 | 7697 | 0.31 | 0.56 | 0.58 | 8.67E-18 | 2.92E-13 | |
| 110 | 9 | IC 2 | all | TFCP2L1 | 29842 | 17925 | 0.3 | 0.27 | 0.26 | 0.003629966921511 | 1 | |
| 110 | 9 | IC 2 | all | RPL21 | 6144 | 10313 | 0.3 | 0.89 | 0.89 | 1.98E-53 | 6.66E-49 | |
| 110 | 9 | IC 2 | all | ND4L | 4539 | 7460 | 0.3 | 0.99 | 0.99 | 1.52E-99 | 5.13E-95 | |
| 110 | 9 | IC 2 | all | UQCR11 | 10975 | 30862 | 0.29 | 0.55 | 0.59 | 5.32E-14 | 1.79E-9 | |
| 110 | 9 | IC 2 | all | RPL36A | 6173 | 10359 | 0.28 | 0.46 | 0.5 | 0.000980748954454 | 1 | |
| 110 | 9 | IC 2 | all | ATP5MG | 10632 | 14247 | 0.27 | 0.57 | 0.62 | 2.45E-14 | 8.26E-10 | |
| 110 | 9 | IC 2 | all | COX6B1 | 1340 | 2280 | 0.27 | 0.57 | 0.62 | 1.28E-13 | 4.31E-9 | |
| 110 | 9 | IC 2 | all | RPL36 | 25873 | 13631 | 0.27 | 0.84 | 0.85 | 1.9E-47 | 6.4E-43 | |
| 110 | 9 | IC 2 | all | COX8A | 1351 | 2294 | 0.27 | 0.46 | 0.5 | 7.71E-6 | 0.25 | |
| 110 | 9 | IC 2 | all | NDUFA4 | 4697 | 7687 | 0.27 | 0.68 | 0.71 | 2.5E-25 | 8.44E-21 | |
| 110 | 9 | IC 2 | all | RPL31 | 6160 | 10334 | 0.26 | 0.75 | 0.76 | 1.71E-32 | 5.76E-28 | |
| 110 | 9 | IC 2 | all | COX5B | 1329 | 2269 | 0.26 | 0.52 | 0.58 | 1.53E-7 | 0.005157551409899 | |
| 110 | 9 | IC 2 | all | NDUFC1 | 4717 | 7705 | 0.26 | 0.43 | 0.47 | 0.003234653498971 | 1 | |
| 110 | 9 | IC 2 | all | UQCRB | 7381 | 12582 | 0.26 | 0.61 | 0.66 | 1.07E-15 | 3.6E-11 | |
| 110 | 9 | IC 2 | all | ND3 | 4537 | 7458 | 0.25 | 1 | 1 | 3.38E-105 | 1.14E-100 |