Marker Genes
Dataset: Novel Human Kidney Cell Subsets Identified by Mux-Seq
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Adult
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 9000000002
- subset name: all
- total genes: 33694
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.biorxiv.org/content/10.1101/2020.03.02.973925v1.full
Rows:79
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
110 | 23 | PC 4 | all | FXYD4 | 53828 | 4028 | 1.89 | 0.93 | 0.23 | 0 | 0 | |
110 | 23 | PC 4 | all | AQP3 | 360 | 636 | 1.81 | 0.8 | 0.17 | 0 | 0 | |
110 | 23 | PC 4 | all | AQP2 | 359 | 634 | 1.79 | 0.9 | 0.18 | 0 | 0 | |
110 | 23 | PC 4 | all | ST6GAL1 | 6480 | 10860 | 1.3 | 0.48 | 0.11 | 2.81e-179 | 9.47e-175 | |
110 | 23 | PC 4 | all | PAPPA | 5069 | 8602 | 1.17 | 0.38 | 0.08 | 6.85e-148 | 2.31e-143 | |
110 | 23 | PC 4 | all | SCNN1G | 6340 | 10602 | 1.04 | 0.33 | 0.06 | 1.49e-163 | 5.02e-159 | |
110 | 23 | PC 4 | all | RP11-396O20.1 | NULL | 1.04 | 0.26 | 0.02 | 0 | 0 | ||
110 | 23 | PC 4 | all | GATA3 | 2625 | 4172 | 0.98 | 0.4 | 0.13 | 7.5e-89 | 2.53e-84 | |
110 | 23 | PC 4 | all | GATA3-AS1 | 399717 | 33786 | 0.92 | 0.27 | 0.06 | 1.62e-102 | 5.44e-98 | |
110 | 23 | PC 4 | all | SLC38A1 | 81539 | 13447 | 0.89 | 0.36 | 0.16 | 1e-46 | 3.37e-42 | |
110 | 23 | PC 4 | all | SMIM22 | 440335 | 48329 | 0.87 | 0.38 | 0.13 | 8.67e-75 | 2.92e-70 | |
110 | 23 | PC 4 | all | CDH16 | 1014 | 1755 | 0.83 | 0.64 | 0.36 | 1.72e-72 | 5.81e-68 | |
110 | 23 | PC 4 | all | PFKFB3 | 5209 | 8874 | 0.81 | 0.33 | 0.13 | 1.4e-53 | 4.72e-49 | |
110 | 23 | PC 4 | all | ARG2 | 384 | 664 | 0.79 | 0.25 | 0.07 | 2.29e-57 | 7.7e-53 | |
110 | 23 | PC 4 | all | PNP | 4860 | 7892 | 0.79 | 0.29 | 0.11 | 7.46e-44 | 2.51e-39 | |
110 | 23 | PC 4 | all | ASAH1 | 427 | 735 | 0.78 | 0.48 | 0.28 | 1.3e-45 | 4.39e-41 | |
110 | 23 | PC 4 | all | STC1 | 6781 | 11373 | 0.78 | 0.45 | 0.14 | 1.84e-92 | 6.21e-88 | |
110 | 23 | PC 4 | all | PTGER1 | 5731 | 9593 | 0.77 | 0.26 | 0.05 | 1.16e-98 | 3.92e-94 | |
110 | 23 | PC 4 | all | NDRG1 | 10397 | 7679 | 0.76 | 0.46 | 0.26 | 1.98e-45 | 6.66e-41 | |
110 | 23 | PC 4 | all | RDH10 | 157506 | 19975 | 0.73 | 0.28 | 0.11 | 6.6e-45 | 2.22e-40 | |
110 | 23 | PC 4 | all | SEC62 | 7095 | 11846 | 0.72 | 0.72 | 0.58 | 4.45e-50 | 1.5e-45 | |
110 | 23 | PC 4 | all | PLEKHA2 | 59339 | 14336 | 0.7 | 0.25 | 0.1 | 5.68e-34 | 1.91e-29 | |
110 | 23 | PC 4 | all | EPCAM | 4072 | 11529 | 0.64 | 0.53 | 0.34 | 6.97e-37 | 2.35e-32 | |
110 | 23 | PC 4 | all | TACSTD2 | 4070 | 11530 | 0.63 | 0.5 | 0.29 | 9.04e-36 | 3.05e-31 | |
110 | 23 | PC 4 | all | MALAT1 | 378938 | 29665 | 0.62 | 1 | 0.99 | 3.32e-137 | 1.12e-132 | |
110 | 23 | PC 4 | all | KRT19 | 3880 | 6436 | 0.61 | 0.52 | 0.27 | 1.19e-46 | 4.02e-42 | |
110 | 23 | PC 4 | all | H1F0 | 3005 | 4714 | 0.6 | 0.26 | 0.16 | 9.61e-17 | 3.24e-12 | |
110 | 23 | PC 4 | all | RALBP1 | 10928 | 9841 | 0.59 | 0.4 | 0.27 | 6.59e-21 | 2.22e-16 | |
110 | 23 | PC 4 | all | RCAN1 | 1827 | 3040 | 0.58 | 0.25 | 0.14 | 4.12e-17 | 1.39e-12 | |
110 | 23 | PC 4 | all | FOLR1 | 2348 | 3791 | 0.57 | 0.26 | 0.15 | 1.26e-16 | 4.24e-12 | |
110 | 23 | PC 4 | all | MAL2 | 114569 | 13634 | 0.57 | 0.34 | 0.2 | 3.28e-21 | 1.11e-16 | |
110 | 23 | PC 4 | all | MECOM | 2122 | 3498 | 0.56 | 0.36 | 0.22 | 1.36e-20 | 4.59e-16 | |
110 | 23 | PC 4 | all | FAM107B | 83641 | 23726 | 0.55 | 0.36 | 0.25 | 1.14e-14 | 3.85e-10 | |
110 | 23 | PC 4 | all | H3F3B | 3021 | 4765 | 0.54 | 0.79 | 0.65 | 4.54e-34 | 1.53e-29 | |
110 | 23 | PC 4 | all | RTN3 | 10313 | 10469 | 0.54 | 0.3 | 0.22 | 3.71e-11 | 1.25e-06 | |
110 | 23 | PC 4 | all | TPM4 | 7171 | 12013 | 0.53 | 0.29 | 0.19 | 5.41e-13 | 1.82e-08 | |
110 | 23 | PC 4 | all | CA2 | 760 | 1373 | 0.52 | 0.38 | 0.23 | 3.1e-24 | 1.04e-19 | |
110 | 23 | PC 4 | all | CREM | 1390 | 2352 | 0.52 | 0.26 | 0.16 | 2.05e-14 | 6.9e-10 | |
110 | 23 | PC 4 | all | ARL6IP1 | 23204 | 697 | 0.52 | 0.49 | 0.39 | 5.03e-18 | 1.69e-13 | |
110 | 23 | PC 4 | all | COX20 | 116228 | 26970 | 0.5 | 0.47 | 0.36 | 1.9e-18 | 6.39e-14 | |
110 | 23 | PC 4 | all | COBLL1 | 22837 | 23571 | 0.48 | 0.38 | 0.28 | 3.55e-14 | 1.2e-09 | |
110 | 23 | PC 4 | all | ND6 | 4541 | 7462 | 0.47 | 0.78 | 0.61 | 4.12e-40 | 1.39e-35 | |
110 | 23 | PC 4 | all | ND2 | 4536 | 7456 | 0.47 | 1 | 1 | 3.59e-90 | 1.21e-85 | |
110 | 23 | PC 4 | all | HSD11B2 | 3291 | 5209 | 0.46 | 0.4 | 0.23 | 6.8e-25 | 2.29e-20 | |
110 | 23 | PC 4 | all | HACD3 | 51495 | 24175 | 0.45 | 0.31 | 0.23 | 1.33e-09 | 4.49e-05 | |
110 | 23 | PC 4 | all | MTRNR2L8 | 100463486 | 37165 | 0.45 | 0.72 | 0.59 | 6.77e-27 | 2.28e-22 | |
110 | 23 | PC 4 | all | METAP2 | 10988 | 16672 | 0.44 | 0.4 | 0.33 | 7.33e-10 | 2.47e-05 | |
110 | 23 | PC 4 | all | EIF5B | 9669 | 30793 | 0.44 | 0.52 | 0.44 | 3.62e-14 | 1.22e-09 | |
110 | 23 | PC 4 | all | PTP4A2 | 8073 | 9635 | 0.42 | 0.35 | 0.27 | 2.63e-09 | 8.88e-05 | |
110 | 23 | PC 4 | all | PTBP3 | 9991 | 10253 | 0.41 | 0.25 | 0.2 | 1.64e-05 | 0.55 | |
110 | 23 | PC 4 | all | ND3 | 4537 | 7458 | 0.41 | 1 | 1 | 2.11e-77 | 7.1e-73 | |
110 | 23 | PC 4 | all | BEX3 | 27018 | 13388 | 0.41 | 0.63 | 0.53 | 6.06e-18 | 2.04e-13 | |
110 | 23 | PC 4 | all | SCIN | 85477 | 21695 | 0.41 | 0.34 | 0.25 | 1.16e-10 | 3.89e-06 | |
110 | 23 | PC 4 | all | MICOS10 | 440574 | 32068 | 0.41 | 0.53 | 0.46 | 8.54e-14 | 2.88e-09 | |
110 | 23 | PC 4 | all | KTN1 | 3895 | 6467 | 0.4 | 0.51 | 0.45 | 2.44e-12 | 8.22e-08 | |
110 | 23 | PC 4 | all | TCEAL9 | 51186 | 30084 | 0.39 | 0.54 | 0.46 | 1.11e-13 | 3.73e-09 | |
110 | 23 | PC 4 | all | KCNJ16 | 3773 | 6262 | 0.39 | 0.47 | 0.36 | 3.88e-14 | 1.31e-09 | |
110 | 23 | PC 4 | all | TMEM50B | 757 | 1280 | 0.38 | 0.27 | 0.22 | 6.83e-05 | 1 | |
110 | 23 | PC 4 | all | DYNC1I2 | 1781 | 2964 | 0.38 | 0.5 | 0.43 | 1.18e-11 | 3.98e-07 | |
110 | 23 | PC 4 | all | WSB1 | 26118 | 19221 | 0.38 | 0.61 | 0.51 | 8.06e-17 | 2.72e-12 | |
110 | 23 | PC 4 | all | IVNS1ABP | 10625 | 16951 | 0.37 | 0.34 | 0.28 | 3.78e-07 | 0.01 | |
110 | 23 | PC 4 | all | NR2F2 | 7026 | 7976 | 0.36 | 0.3 | 0.26 | 5.36e-05 | 1 | |
110 | 23 | PC 4 | all | MRPL33 | 9553 | 14487 | 0.35 | 0.55 | 0.49 | 1.09e-11 | 3.68e-07 | |
110 | 23 | PC 4 | all | GSTM3 | 2947 | 4635 | 0.35 | 0.27 | 0.21 | 3.96e-06 | 0.13 | |
110 | 23 | PC 4 | all | CETN2 | 1069 | 1867 | 0.35 | 0.3 | 0.27 | 0.000350672150631 | 1 | |
110 | 23 | PC 4 | all | AIF1L | 83543 | 28904 | 0.34 | 0.32 | 0.27 | 4.83e-06 | 0.16 | |
110 | 23 | PC 4 | all | TSC22D1 | 8848 | 16826 | 0.34 | 0.48 | 0.4 | 2.86e-10 | 9.65e-06 | |
110 | 23 | PC 4 | all | GLS | 2744 | 4331 | 0.3 | 0.34 | 0.32 | 0.001739980490885 | 1 | |
110 | 23 | PC 4 | all | FOSL2 | 2355 | 3798 | 0.29 | 0.32 | 0.29 | 0.005345166612692 | 1 | |
110 | 23 | PC 4 | all | SON | 6651 | 11183 | 0.28 | 0.44 | 0.42 | 0.000132651647923 | 1 | |
110 | 23 | PC 4 | all | CYB5A | 1528 | 2570 | 0.28 | 0.43 | 0.41 | 9.78e-05 | 1 | |
110 | 23 | PC 4 | all | RTN4 | 57142 | 14085 | 0.27 | 0.55 | 0.51 | 2.5e-07 | 0.008418047071664 | |
110 | 23 | PC 4 | all | N4BP2L2 | 10443 | 26916 | 0.27 | 0.42 | 0.39 | 0.000148308675233 | 1 | |
110 | 23 | PC 4 | all | SRRM1 | 10250 | 16638 | 0.26 | 0.38 | 0.38 | 0.009938668161228 | 1 | |
110 | 23 | PC 4 | all | EMX2 | 2018 | 3341 | 0.26 | 0.45 | 0.4 | 8.98e-06 | 0.3 | |
110 | 23 | PC 4 | all | LAMTOR5 | 10542 | 17955 | 0.26 | 0.44 | 0.44 | 0.002440083565619 | 1 | |
110 | 23 | PC 4 | all | NDUFA4 | 4697 | 7687 | 0.26 | 0.78 | 0.71 | 3.05e-10 | 1.03e-05 | |
110 | 23 | PC 4 | all | CAMK2N1 | 55450 | 24190 | 0.26 | 0.37 | 0.31 | 1.93e-05 | 0.64 | |
110 | 23 | PC 4 | all | CD9 | 928 | 1709 | 0.25 | 0.66 | 0.56 | 3.38e-13 | 1.14e-08 |