Marker Genes
Dataset: Novel Human Kidney Cell Subsets Identified by Mux-Seq
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Adult
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 9000000002
- subset name: all
- total genes: 33694
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.biorxiv.org/content/10.1101/2020.03.02.973925v1.full
Rows:79
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
110 | 22 | PT 1 | all | GATM | 2628 | 4175 | 2.38 | 0.88 | 0.18 | 0 | 0 | |
110 | 22 | PT 1 | all | GPX3 | 2878 | 4555 | 2.34 | 0.9 | 0.34 | 0 | 0 | |
110 | 22 | PT 1 | all | ALDOB | 229 | 417 | 2.24 | 0.74 | 0.07 | 0 | 0 | |
110 | 22 | PT 1 | all | PCK1 | 5105 | 8724 | 1.79 | 0.55 | 0.09 | 0 | 0 | |
110 | 22 | PT 1 | all | MT1G | 4495 | 7399 | 1.66 | 0.78 | 0.37 | 1.02e-155 | 3.42e-151 | |
110 | 22 | PT 1 | all | APOE | 348 | 613 | 1.59 | 0.74 | 0.23 | 2.48e-245 | 8.36e-241 | |
110 | 22 | PT 1 | all | FABP1 | 2168 | 3555 | 1.51 | 0.36 | 0.02 | 0 | 0 | |
110 | 22 | PT 1 | all | UGT2B7 | 7364 | 12554 | 1.45 | 0.57 | 0.17 | 1.46e-171 | 4.92e-167 | |
110 | 22 | PT 1 | all | PRAP1 | 118471 | 23304 | 1.43 | 0.38 | 0.04 | 0 | 0 | |
110 | 22 | PT 1 | all | MT1H | 4496 | 7400 | 1.4 | 0.46 | 0.14 | 8.02e-114 | 2.7e-109 | |
110 | 22 | PT 1 | all | MIOX | 55586 | 14522 | 1.39 | 0.33 | 0.04 | 1.47e-230 | 4.95e-226 | |
110 | 22 | PT 1 | all | GSTA1 | 2938 | 4626 | 1.37 | 0.33 | 0.03 | 0 | 0 | |
110 | 22 | PT 1 | all | MGST1 | 4257 | 7061 | 1.34 | 0.61 | 0.2 | 1.11e-171 | 3.75e-167 | |
110 | 22 | PT 1 | all | SMIM24 | 284422 | 37244 | 1.34 | 0.69 | 0.29 | 1.8e-151 | 6.07e-147 | |
110 | 22 | PT 1 | all | AK4 | 205 | 363 | 1.32 | 0.42 | 0.07 | 1.84e-227 | 6.18e-223 | |
110 | 22 | PT 1 | all | CUBN | 8029 | 2548 | 1.29 | 0.34 | 0.03 | 0 | 0 | |
110 | 22 | PT 1 | all | NAT8 | 9027 | 18069 | 1.26 | 0.43 | 0.08 | 1.55e-195 | 5.22e-191 | |
110 | 22 | PT 1 | all | ACSM2B | 348158 | 30931 | 1.22 | 0.38 | 0.08 | 1.96e-148 | 6.59e-144 | |
110 | 22 | PT 1 | all | ASS1 | 445 | 758 | 1.2 | 0.41 | 0.11 | 2.51e-136 | 8.45e-132 | |
110 | 22 | PT 1 | all | SUCLG1 | 8802 | 11449 | 1.16 | 0.47 | 0.23 | 2.1e-67 | 7.06e-63 | |
110 | 22 | PT 1 | all | SLC16A9 | 220963 | 23520 | 1.15 | 0.32 | 0.03 | 6.31e-271 | 2.13e-266 | |
110 | 22 | PT 1 | all | PDZK1IP1 | 10158 | 16887 | 1.15 | 0.6 | 0.21 | 2.91e-144 | 9.8e-140 | |
110 | 22 | PT 1 | all | DDC | 1644 | 2719 | 1.13 | 0.3 | 0.03 | 5.93e-293 | 2e-288 | |
110 | 22 | PT 1 | all | HMGCS2 | 3158 | 5008 | 1.1 | 0.35 | 0.09 | 7.66e-99 | 2.58e-94 | |
110 | 22 | PT 1 | all | SLC7A8 | 23428 | 11066 | 1.08 | 0.31 | 0.08 | 1.12e-93 | 3.77e-89 | |
110 | 22 | PT 1 | all | C11orf54 | 28970 | 30204 | 1.08 | 0.44 | 0.19 | 3.53e-70 | 1.19e-65 | |
110 | 22 | PT 1 | all | ACSM2A | 123876 | 32017 | 1.02 | 0.41 | 0.11 | 3.67e-111 | 1.23e-106 | |
110 | 22 | PT 1 | all | FTL | 2512 | 3999 | 1.01 | 0.94 | 0.77 | 4.94e-117 | 1.66e-112 | |
110 | 22 | PT 1 | all | PLIN2 | 123 | 248 | 0.99 | 0.31 | 0.1 | 1.37e-74 | 4.62e-70 | |
110 | 22 | PT 1 | all | DPEP1 | 1800 | 3002 | 0.98 | 0.26 | 0.04 | 1.46e-159 | 4.91e-155 | |
110 | 22 | PT 1 | all | RIDA | 10247 | 16897 | 0.95 | 0.27 | 0.08 | 8.13e-71 | 2.74e-66 | |
110 | 22 | PT 1 | all | PAH | 5053 | 8582 | 0.94 | 0.26 | 0.02 | 1.45e-227 | 4.88e-223 | |
110 | 22 | PT 1 | all | CLTRN | 57393 | 29437 | 0.92 | 0.29 | 0.08 | 1.02e-84 | 3.43e-80 | |
110 | 22 | PT 1 | all | LGALS2 | 3957 | 6562 | 0.91 | 0.33 | 0.09 | 2.63e-89 | 8.87e-85 | |
110 | 22 | PT 1 | all | PDK4 | 5166 | 8812 | 0.9 | 0.56 | 0.34 | 1.65e-49 | 5.55e-45 | |
110 | 22 | PT 1 | all | ACADM | 34 | 89 | 0.9 | 0.37 | 0.18 | 7.13e-43 | 2.4e-38 | |
110 | 22 | PT 1 | all | BBOX1 | 8424 | 964 | 0.88 | 0.35 | 0.12 | 1.34e-69 | 4.51e-65 | |
110 | 22 | PT 1 | all | LRP2 | 4036 | 6694 | 0.87 | 0.29 | 0.07 | 2.4e-94 | 8.1e-90 | |
110 | 22 | PT 1 | all | SLC5A12 | 159963 | 28750 | 0.85 | 0.29 | 0.04 | 6.76e-146 | 2.28e-141 | |
110 | 22 | PT 1 | all | DAB2 | 1601 | 2662 | 0.85 | 0.43 | 0.23 | 1.16e-49 | 3.9e-45 | |
110 | 22 | PT 1 | all | RBP5 | 83758 | 15847 | 0.85 | 0.28 | 0.09 | 1.12e-57 | 3.77e-53 | |
110 | 22 | PT 1 | all | MT1F | 4494 | 7398 | 0.8 | 0.49 | 0.26 | 4.5e-51 | 1.52e-46 | |
110 | 22 | PT 1 | all | ALDH6A1 | 4329 | 7179 | 0.8 | 0.27 | 0.11 | 1.75e-42 | 5.9e-38 | |
110 | 22 | PT 1 | all | TXN | 7295 | 12435 | 0.8 | 0.57 | 0.4 | 4.47e-40 | 1.51e-35 | |
110 | 22 | PT 1 | all | ACAA2 | 10449 | 83 | 0.77 | 0.27 | 0.14 | 1.04e-24 | 3.51e-20 | |
110 | 22 | PT 1 | all | PTH1R | 5745 | 9608 | 0.77 | 0.34 | 0.17 | 1.65e-33 | 5.56e-29 | |
110 | 22 | PT 1 | all | ERRFI1 | 54206 | 18185 | 0.75 | 0.31 | 0.18 | 1.04e-24 | 3.5e-20 | |
110 | 22 | PT 1 | all | MT1X | 4501 | 7405 | 0.73 | 0.67 | 0.4 | 3.68e-61 | 1.24e-56 | |
110 | 22 | PT 1 | all | PDZK1 | 5174 | 8821 | 0.69 | 0.26 | 0.1 | 6.61e-42 | 2.23e-37 | |
110 | 22 | PT 1 | all | ND2 | 4536 | 7456 | 0.67 | 1 | 1 | 6.19e-131 | 2.09e-126 | |
110 | 22 | PT 1 | all | CYB5A | 1528 | 2570 | 0.62 | 0.54 | 0.4 | 1.04e-26 | 3.5e-22 | |
110 | 22 | PT 1 | all | GCSH | 2653 | 4208 | 0.61 | 0.25 | 0.15 | 1.84e-15 | 6.21e-11 | |
110 | 22 | PT 1 | all | ETFB | 2109 | 3482 | 0.6 | 0.31 | 0.22 | 1.13e-14 | 3.81e-10 | |
110 | 22 | PT 1 | all | ND3 | 4537 | 7458 | 0.58 | 1 | 1 | 4.19e-122 | 1.41e-117 | |
110 | 22 | PT 1 | all | ATP6 | 4508 | 7414 | 0.57 | 1 | 1 | 7.37e-123 | 2.48e-118 | |
110 | 22 | PT 1 | all | ECHS1 | 1892 | 3151 | 0.55 | 0.3 | 0.22 | 2.29e-11 | 7.73e-07 | |
110 | 22 | PT 1 | all | SELENOP | 6414 | 10751 | 0.54 | 0.45 | 0.33 | 1.34e-18 | 4.51e-14 | |
110 | 22 | PT 1 | all | COX3 | 4514 | 7422 | 0.53 | 1 | 1 | 2.8e-117 | 9.42e-113 | |
110 | 22 | PT 1 | all | COX1 | 4512 | 7419 | 0.51 | 1 | 1 | 6.7e-120 | 2.26e-115 | |
110 | 22 | PT 1 | all | CAT | 847 | 1516 | 0.51 | 0.26 | 0.17 | 2.48e-14 | 8.37e-10 | |
110 | 22 | PT 1 | all | ACAT1 | 38 | 93 | 0.5 | 0.32 | 0.22 | 2.12e-13 | 7.14e-09 | |
110 | 22 | PT 1 | all | SLC3A1 | 6519 | 11025 | 0.48 | 0.26 | 0.18 | 2.52e-10 | 8.48e-06 | |
110 | 22 | PT 1 | all | METTL7A | 25840 | 24550 | 0.47 | 0.28 | 0.18 | 1.24e-12 | 4.17e-08 | |
110 | 22 | PT 1 | all | CYTB | 4519 | 7427 | 0.43 | 1 | 1 | 1.11e-74 | 3.75e-70 | |
110 | 22 | PT 1 | all | MTCO2P12 | 107075310 | 52028 | 0.4 | 1 | 1 | 1.55e-97 | 5.21e-93 | |
110 | 22 | PT 1 | all | RPS27L | 51065 | 18476 | 0.4 | 0.61 | 0.53 | 3.68e-15 | 1.24e-10 | |
110 | 22 | PT 1 | all | OCIAD2 | 132299 | 28685 | 0.4 | 0.33 | 0.28 | 4.28e-07 | 0.01 | |
110 | 22 | PT 1 | all | TMBIM6 | 7009 | 11723 | 0.38 | 0.56 | 0.53 | 2.07e-10 | 6.97e-06 | |
110 | 22 | PT 1 | all | ND4 | 4538 | 7459 | 0.38 | 1 | 1 | 2.16e-78 | 7.26e-74 | |
110 | 22 | PT 1 | all | ND6 | 4541 | 7462 | 0.37 | 0.7 | 0.61 | 5.84e-20 | 1.97e-15 | |
110 | 22 | PT 1 | all | CXCL14 | 9547 | 10640 | 0.37 | 0.52 | 0.31 | 1.58e-30 | 5.33e-26 | |
110 | 22 | PT 1 | all | CFDP1 | 10428 | 1873 | 0.36 | 0.26 | 0.23 | 0.000335912695598 | 1 | |
110 | 22 | PT 1 | all | ATOX1 | 475 | 798 | 0.35 | 0.4 | 0.37 | 3.93e-05 | 1 | |
110 | 22 | PT 1 | all | ND1 | 4535 | 7455 | 0.34 | 1 | 1 | 6.69e-51 | 2.25e-46 | |
110 | 22 | PT 1 | all | PRDX3 | 10935 | 9354 | 0.34 | 0.32 | 0.29 | 0.000531500211332 | 1 | |
110 | 22 | PT 1 | all | GLS | 2744 | 4331 | 0.32 | 0.37 | 0.32 | 1.99e-06 | 0.06 | |
110 | 22 | PT 1 | all | MTRNR2L8 | 100463486 | 37165 | 0.31 | 0.69 | 0.59 | 1.77e-15 | 5.96e-11 | |
110 | 22 | PT 1 | all | HINT1 | 3094 | 4912 | 0.27 | 0.61 | 0.56 | 3.01e-07 | 0.01 | |
110 | 22 | PT 1 | all | TPT1 | 7178 | 12022 | 0.27 | 0.81 | 0.78 | 4.68e-12 | 1.58e-07 |