Marker Genes
Dataset: Novel Human Kidney Cell Subsets Identified by Mux-Seq
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Adult
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 9000000002
- subset name: all
- total genes: 33694
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.biorxiv.org/content/10.1101/2020.03.02.973925v1.full
Rows:79
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110 | 22 | PT 1 | all | GATM | 2628 | 4175 | 2.38 | 0.88 | 0.18 | 0 | 0 | |
| 110 | 22 | PT 1 | all | GPX3 | 2878 | 4555 | 2.34 | 0.9 | 0.34 | 0 | 0 | |
| 110 | 22 | PT 1 | all | ALDOB | 229 | 417 | 2.24 | 0.74 | 0.07 | 0 | 0 | |
| 110 | 22 | PT 1 | all | PCK1 | 5105 | 8724 | 1.79 | 0.55 | 0.09 | 0 | 0 | |
| 110 | 22 | PT 1 | all | MT1G | 4495 | 7399 | 1.66 | 0.78 | 0.37 | 1.02E-155 | 3.42E-151 | |
| 110 | 22 | PT 1 | all | APOE | 348 | 613 | 1.59 | 0.74 | 0.23 | 2.48E-245 | 8.36E-241 | |
| 110 | 22 | PT 1 | all | FABP1 | 2168 | 3555 | 1.51 | 0.36 | 0.02 | 0 | 0 | |
| 110 | 22 | PT 1 | all | UGT2B7 | 7364 | 12554 | 1.45 | 0.57 | 0.17 | 1.46E-171 | 4.92E-167 | |
| 110 | 22 | PT 1 | all | PRAP1 | 118471 | 23304 | 1.43 | 0.38 | 0.04 | 0 | 0 | |
| 110 | 22 | PT 1 | all | MT1H | 4496 | 7400 | 1.4 | 0.46 | 0.14 | 8.02E-114 | 2.7E-109 | |
| 110 | 22 | PT 1 | all | MIOX | 55586 | 14522 | 1.39 | 0.33 | 0.04 | 1.47E-230 | 4.95E-226 | |
| 110 | 22 | PT 1 | all | GSTA1 | 2938 | 4626 | 1.37 | 0.33 | 0.03 | 0 | 0 | |
| 110 | 22 | PT 1 | all | MGST1 | 4257 | 7061 | 1.34 | 0.61 | 0.2 | 1.11E-171 | 3.75E-167 | |
| 110 | 22 | PT 1 | all | SMIM24 | 284422 | 37244 | 1.34 | 0.69 | 0.29 | 1.8E-151 | 6.07E-147 | |
| 110 | 22 | PT 1 | all | AK4 | 205 | 363 | 1.32 | 0.42 | 0.07 | 1.84E-227 | 6.18E-223 | |
| 110 | 22 | PT 1 | all | CUBN | 8029 | 2548 | 1.29 | 0.34 | 0.03 | 0 | 0 | |
| 110 | 22 | PT 1 | all | NAT8 | 9027 | 18069 | 1.26 | 0.43 | 0.08 | 1.55E-195 | 5.22E-191 | |
| 110 | 22 | PT 1 | all | ACSM2B | 348158 | 30931 | 1.22 | 0.38 | 0.08 | 1.96E-148 | 6.59E-144 | |
| 110 | 22 | PT 1 | all | ASS1 | 445 | 758 | 1.2 | 0.41 | 0.11 | 2.51E-136 | 8.45E-132 | |
| 110 | 22 | PT 1 | all | SUCLG1 | 8802 | 11449 | 1.16 | 0.47 | 0.23 | 2.1E-67 | 7.06E-63 | |
| 110 | 22 | PT 1 | all | SLC16A9 | 220963 | 23520 | 1.15 | 0.32 | 0.03 | 6.31E-271 | 2.13E-266 | |
| 110 | 22 | PT 1 | all | PDZK1IP1 | 10158 | 16887 | 1.15 | 0.6 | 0.21 | 2.91E-144 | 9.8E-140 | |
| 110 | 22 | PT 1 | all | DDC | 1644 | 2719 | 1.13 | 0.3 | 0.03 | 5.93E-293 | 2.0E-288 | |
| 110 | 22 | PT 1 | all | HMGCS2 | 3158 | 5008 | 1.1 | 0.35 | 0.09 | 7.66E-99 | 2.58E-94 | |
| 110 | 22 | PT 1 | all | SLC7A8 | 23428 | 11066 | 1.08 | 0.31 | 0.08 | 1.12E-93 | 3.77E-89 | |
| 110 | 22 | PT 1 | all | C11orf54 | 28970 | 30204 | 1.08 | 0.44 | 0.19 | 3.53E-70 | 1.19E-65 | |
| 110 | 22 | PT 1 | all | ACSM2A | 123876 | 32017 | 1.02 | 0.41 | 0.11 | 3.67E-111 | 1.23E-106 | |
| 110 | 22 | PT 1 | all | FTL | 2512 | 3999 | 1.01 | 0.94 | 0.77 | 4.94E-117 | 1.66E-112 | |
| 110 | 22 | PT 1 | all | PLIN2 | 123 | 248 | 0.99 | 0.31 | 0.1 | 1.37E-74 | 4.62E-70 | |
| 110 | 22 | PT 1 | all | DPEP1 | 1800 | 3002 | 0.98 | 0.26 | 0.04 | 1.46E-159 | 4.91E-155 | |
| 110 | 22 | PT 1 | all | RIDA | 10247 | 16897 | 0.95 | 0.27 | 0.08 | 8.13E-71 | 2.74E-66 | |
| 110 | 22 | PT 1 | all | PAH | 5053 | 8582 | 0.94 | 0.26 | 0.02 | 1.45E-227 | 4.88E-223 | |
| 110 | 22 | PT 1 | all | CLTRN | 57393 | 29437 | 0.92 | 0.29 | 0.08 | 1.02E-84 | 3.43E-80 | |
| 110 | 22 | PT 1 | all | LGALS2 | 3957 | 6562 | 0.91 | 0.33 | 0.09 | 2.63E-89 | 8.87E-85 | |
| 110 | 22 | PT 1 | all | PDK4 | 5166 | 8812 | 0.9 | 0.56 | 0.34 | 1.65E-49 | 5.55E-45 | |
| 110 | 22 | PT 1 | all | ACADM | 34 | 89 | 0.9 | 0.37 | 0.18 | 7.13E-43 | 2.4E-38 | |
| 110 | 22 | PT 1 | all | BBOX1 | 8424 | 964 | 0.88 | 0.35 | 0.12 | 1.34E-69 | 4.51E-65 | |
| 110 | 22 | PT 1 | all | LRP2 | 4036 | 6694 | 0.87 | 0.29 | 0.07 | 2.4E-94 | 8.1E-90 | |
| 110 | 22 | PT 1 | all | SLC5A12 | 159963 | 28750 | 0.85 | 0.29 | 0.04 | 6.76E-146 | 2.28E-141 | |
| 110 | 22 | PT 1 | all | DAB2 | 1601 | 2662 | 0.85 | 0.43 | 0.23 | 1.16E-49 | 3.9E-45 | |
| 110 | 22 | PT 1 | all | RBP5 | 83758 | 15847 | 0.85 | 0.28 | 0.09 | 1.12E-57 | 3.77E-53 | |
| 110 | 22 | PT 1 | all | MT1F | 4494 | 7398 | 0.8 | 0.49 | 0.26 | 4.5E-51 | 1.52E-46 | |
| 110 | 22 | PT 1 | all | ALDH6A1 | 4329 | 7179 | 0.8 | 0.27 | 0.11 | 1.75E-42 | 5.9E-38 | |
| 110 | 22 | PT 1 | all | TXN | 7295 | 12435 | 0.8 | 0.57 | 0.4 | 4.47E-40 | 1.51E-35 | |
| 110 | 22 | PT 1 | all | ACAA2 | 10449 | 83 | 0.77 | 0.27 | 0.14 | 1.04E-24 | 3.51E-20 | |
| 110 | 22 | PT 1 | all | PTH1R | 5745 | 9608 | 0.77 | 0.34 | 0.17 | 1.65E-33 | 5.56E-29 | |
| 110 | 22 | PT 1 | all | ERRFI1 | 54206 | 18185 | 0.75 | 0.31 | 0.18 | 1.04E-24 | 3.5E-20 | |
| 110 | 22 | PT 1 | all | MT1X | 4501 | 7405 | 0.73 | 0.67 | 0.4 | 3.68E-61 | 1.24E-56 | |
| 110 | 22 | PT 1 | all | PDZK1 | 5174 | 8821 | 0.69 | 0.26 | 0.1 | 6.61E-42 | 2.23E-37 | |
| 110 | 22 | PT 1 | all | ND2 | 4536 | 7456 | 0.67 | 1 | 1 | 6.19E-131 | 2.09E-126 | |
| 110 | 22 | PT 1 | all | CYB5A | 1528 | 2570 | 0.62 | 0.54 | 0.4 | 1.04E-26 | 3.5E-22 | |
| 110 | 22 | PT 1 | all | GCSH | 2653 | 4208 | 0.61 | 0.25 | 0.15 | 1.84E-15 | 6.21E-11 | |
| 110 | 22 | PT 1 | all | ETFB | 2109 | 3482 | 0.6 | 0.31 | 0.22 | 1.13E-14 | 3.81E-10 | |
| 110 | 22 | PT 1 | all | ND3 | 4537 | 7458 | 0.58 | 1 | 1 | 4.19E-122 | 1.41E-117 | |
| 110 | 22 | PT 1 | all | ATP6 | 4508 | 7414 | 0.57 | 1 | 1 | 7.37E-123 | 2.48E-118 | |
| 110 | 22 | PT 1 | all | ECHS1 | 1892 | 3151 | 0.55 | 0.3 | 0.22 | 2.29E-11 | 7.73E-7 | |
| 110 | 22 | PT 1 | all | SELENOP | 6414 | 10751 | 0.54 | 0.45 | 0.33 | 1.34E-18 | 4.51E-14 | |
| 110 | 22 | PT 1 | all | COX3 | 4514 | 7422 | 0.53 | 1 | 1 | 2.8E-117 | 9.42E-113 | |
| 110 | 22 | PT 1 | all | COX1 | 4512 | 7419 | 0.51 | 1 | 1 | 6.7E-120 | 2.26E-115 | |
| 110 | 22 | PT 1 | all | CAT | 847 | 1516 | 0.51 | 0.26 | 0.17 | 2.48E-14 | 8.37E-10 | |
| 110 | 22 | PT 1 | all | ACAT1 | 38 | 93 | 0.5 | 0.32 | 0.22 | 2.12E-13 | 7.14E-9 | |
| 110 | 22 | PT 1 | all | SLC3A1 | 6519 | 11025 | 0.48 | 0.26 | 0.18 | 2.52E-10 | 8.48E-6 | |
| 110 | 22 | PT 1 | all | METTL7A | 25840 | 24550 | 0.47 | 0.28 | 0.18 | 1.24E-12 | 4.17E-8 | |
| 110 | 22 | PT 1 | all | CYTB | 4519 | 7427 | 0.43 | 1 | 1 | 1.11E-74 | 3.75E-70 | |
| 110 | 22 | PT 1 | all | MTCO2P12 | 107075310 | 52028 | 0.4 | 1 | 1 | 1.55E-97 | 5.21E-93 | |
| 110 | 22 | PT 1 | all | RPS27L | 51065 | 18476 | 0.4 | 0.61 | 0.53 | 3.68E-15 | 1.24E-10 | |
| 110 | 22 | PT 1 | all | OCIAD2 | 132299 | 28685 | 0.4 | 0.33 | 0.28 | 4.28E-7 | 0.01 | |
| 110 | 22 | PT 1 | all | TMBIM6 | 7009 | 11723 | 0.38 | 0.56 | 0.53 | 2.07E-10 | 6.97E-6 | |
| 110 | 22 | PT 1 | all | ND4 | 4538 | 7459 | 0.38 | 1 | 1 | 2.16E-78 | 7.26E-74 | |
| 110 | 22 | PT 1 | all | ND6 | 4541 | 7462 | 0.37 | 0.7 | 0.61 | 5.84E-20 | 1.97E-15 | |
| 110 | 22 | PT 1 | all | CXCL14 | 9547 | 10640 | 0.37 | 0.52 | 0.31 | 1.58E-30 | 5.33E-26 | |
| 110 | 22 | PT 1 | all | CFDP1 | 10428 | 1873 | 0.36 | 0.26 | 0.23 | 0.000335912695598 | 1 | |
| 110 | 22 | PT 1 | all | ATOX1 | 475 | 798 | 0.35 | 0.4 | 0.37 | 3.93E-5 | 1 | |
| 110 | 22 | PT 1 | all | ND1 | 4535 | 7455 | 0.34 | 1 | 1 | 6.69E-51 | 2.25E-46 | |
| 110 | 22 | PT 1 | all | PRDX3 | 10935 | 9354 | 0.34 | 0.32 | 0.29 | 0.000531500211332 | 1 | |
| 110 | 22 | PT 1 | all | GLS | 2744 | 4331 | 0.32 | 0.37 | 0.32 | 1.99E-6 | 0.06 | |
| 110 | 22 | PT 1 | all | MTRNR2L8 | 100463486 | 37165 | 0.31 | 0.69 | 0.59 | 1.77E-15 | 5.96E-11 | |
| 110 | 22 | PT 1 | all | HINT1 | 3094 | 4912 | 0.27 | 0.61 | 0.56 | 3.01E-7 | 0.01 | |
| 110 | 22 | PT 1 | all | TPT1 | 7178 | 12022 | 0.27 | 0.81 | 0.78 | 4.68E-12 | 1.58E-7 |