Marker Genes
Dataset: Novel Human Kidney Cell Subsets Identified by Mux-Seq
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Adult
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 9000000002
- subset name: all
- total genes: 33694
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.biorxiv.org/content/10.1101/2020.03.02.973925v1.full
Rows:67
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
110 | 18 | Lymphoid | all | CCL5 | 6352 | 10632 | 2.11 | 0.47 | 0.03 | 0 | 0 | |
110 | 18 | Lymphoid | all | GNLY | 10578 | 4414 | 1.93 | 0.28 | 0.01 | 0 | 0 | |
110 | 18 | Lymphoid | all | CCL4 | 6351 | 10630 | 1.93 | 0.32 | 0.03 | 0 | 0 | |
110 | 18 | Lymphoid | all | CD69 | 969 | 1694 | 1.78 | 0.45 | 0.04 | 0 | 0 | |
110 | 18 | Lymphoid | all | NKG7 | 4818 | 7830 | 1.65 | 0.32 | 0.01 | 0 | 0 | |
110 | 18 | Lymphoid | all | CD52 | 1043 | 1804 | 1.53 | 0.38 | 0.04 | 0 | 0 | |
110 | 18 | Lymphoid | all | KLRB1 | 3820 | 6373 | 1.45 | 0.29 | 0.01 | 0 | 0 | |
110 | 18 | Lymphoid | all | CXCR4 | 7852 | 2561 | 1.44 | 0.54 | 0.11 | 0 | 0 | |
110 | 18 | Lymphoid | all | PTPRC | 5788 | 9666 | 1.42 | 0.4 | 0.04 | 0 | 0 | |
110 | 18 | Lymphoid | all | CD3D | 915 | 1673 | 1.06 | 0.25 | 0.02 | 0 | 0 | |
110 | 18 | Lymphoid | all | BTG1 | 694 | 1130 | 0.99 | 0.69 | 0.45 | 1.92e-150 | 6.47e-146 | |
110 | 18 | Lymphoid | all | HCST | 10870 | 16977 | 0.98 | 0.26 | 0.03 | 0 | 0 | |
110 | 18 | Lymphoid | all | SRGN | 5552 | 9361 | 0.94 | 0.43 | 0.13 | 3.99e-201 | 1.35e-196 | |
110 | 18 | Lymphoid | all | DNAJB1 | 3337 | 5270 | 0.87 | 0.54 | 0.43 | 2.43e-36 | 8.2e-32 | |
110 | 18 | Lymphoid | all | TNFAIP3 | 7128 | 11896 | 0.79 | 0.26 | 0.08 | 1.08e-107 | 3.63e-103 | |
110 | 18 | Lymphoid | all | ARHGDIB | 397 | 679 | 0.78 | 0.29 | 0.1 | 5e-105 | 1.68e-100 | |
110 | 18 | Lymphoid | all | B2M | 567 | 914 | 0.77 | 0.99 | 0.89 | 1.31e-219 | 4.4e-215 | |
110 | 18 | Lymphoid | all | ETS1 | 2113 | 3488 | 0.68 | 0.28 | 0.1 | 1.27e-84 | 4.27e-80 | |
110 | 18 | Lymphoid | all | HLA-C | 3107 | 4933 | 0.67 | 0.53 | 0.46 | 4.57e-27 | 1.54e-22 | |
110 | 18 | Lymphoid | all | ELF1 | 1997 | 3316 | 0.64 | 0.25 | 0.15 | 2.6e-32 | 8.75e-28 | |
110 | 18 | Lymphoid | all | HLA-B | 3106 | 4932 | 0.63 | 0.62 | 0.5 | 1.1e-48 | 3.7e-44 | |
110 | 18 | Lymphoid | all | IL32 | 9235 | 16830 | 0.62 | 0.44 | 0.24 | 3.82e-66 | 1.29e-61 | |
110 | 18 | Lymphoid | all | TSC22D3 | 1831 | 3051 | 0.62 | 0.43 | 0.27 | 2.43e-45 | 8.17e-41 | |
110 | 18 | Lymphoid | all | S100A4 | 6275 | 10494 | 0.59 | 0.41 | 0.25 | 2.09e-47 | 7.06e-43 | |
110 | 18 | Lymphoid | all | ZFP36L2 | 678 | 1108 | 0.58 | 0.48 | 0.35 | 2.49e-38 | 8.38e-34 | |
110 | 18 | Lymphoid | all | TMSB4X | 7114 | 11881 | 0.58 | 0.94 | 0.8 | 1.94e-84 | 6.54e-80 | |
110 | 18 | Lymphoid | all | PPP2R5C | 5527 | 9311 | 0.58 | 0.25 | 0.13 | 1.95e-36 | 6.57e-32 | |
110 | 18 | Lymphoid | all | DNAJA1 | 3301 | 5229 | 0.55 | 0.35 | 0.33 | 1.38e-05 | 0.46 | |
110 | 18 | Lymphoid | all | HSPH1 | 10808 | 16969 | 0.55 | 0.34 | 0.3 | 5.2e-09 | 0.000175125086572 | |
110 | 18 | Lymphoid | all | SH3BGRL3 | 83442 | 15568 | 0.54 | 0.38 | 0.3 | 2.06e-20 | 6.94e-16 | |
110 | 18 | Lymphoid | all | HSPA8 | 3312 | 5241 | 0.53 | 0.43 | 0.4 | 6.98e-11 | 2.35e-06 | |
110 | 18 | Lymphoid | all | ID2 | 3398 | 5361 | 0.51 | 0.36 | 0.3 | 4.93e-14 | 1.66e-09 | |
110 | 18 | Lymphoid | all | HSP90AA1 | 3320 | 5253 | 0.48 | 0.79 | 0.78 | 1.82e-15 | 6.13e-11 | |
110 | 18 | Lymphoid | all | ANXA1 | 301 | 533 | 0.47 | 0.26 | 0.21 | 2.44e-08 | 0.000821657228004 | |
110 | 18 | Lymphoid | all | PABPC1 | 26986 | 8554 | 0.47 | 0.59 | 0.49 | 3.27e-34 | 1.1e-29 | |
110 | 18 | Lymphoid | all | SRSF7 | 6432 | 10789 | 0.46 | 0.31 | 0.26 | 4.14e-11 | 1.4e-06 | |
110 | 18 | Lymphoid | all | RPS27 | 6232 | 10416 | 0.45 | 0.97 | 0.94 | 9.94e-83 | 3.35e-78 | |
110 | 18 | Lymphoid | all | RPS3 | 6188 | 10420 | 0.43 | 0.71 | 0.66 | 4.4e-33 | 1.48e-28 | |
110 | 18 | Lymphoid | all | RPS15A | 6210 | 10389 | 0.43 | 0.87 | 0.78 | 2.61e-59 | 8.81e-55 | |
110 | 18 | Lymphoid | all | RPS29 | 6235 | 10419 | 0.41 | 0.94 | 0.9 | 7.1e-67 | 2.39e-62 | |
110 | 18 | Lymphoid | all | ND2 | 4536 | 7456 | 0.41 | 1 | 1 | 1.11e-56 | 3.74e-52 | |
110 | 18 | Lymphoid | all | RPL30 | 6156 | 10333 | 0.4 | 0.64 | 0.59 | 1.98e-22 | 6.67e-18 | |
110 | 18 | Lymphoid | all | RPLP2 | 6181 | 10377 | 0.37 | 0.82 | 0.79 | 9.24e-31 | 3.11e-26 | |
110 | 18 | Lymphoid | all | HLA-E | 3133 | 4962 | 0.37 | 0.41 | 0.34 | 1.2e-14 | 4.04e-10 | |
110 | 18 | Lymphoid | all | HLA-A | 3105 | 4931 | 0.37 | 0.51 | 0.5 | 1.53e-10 | 5.17e-06 | |
110 | 18 | Lymphoid | all | RPS2 | 6187 | 10404 | 0.36 | 0.73 | 0.66 | 2.45e-22 | 8.27e-18 | |
110 | 18 | Lymphoid | all | RPS19 | 6223 | 10402 | 0.35 | 0.88 | 0.84 | 8.15e-43 | 2.75e-38 | |
110 | 18 | Lymphoid | all | CYTB | 4519 | 7427 | 0.35 | 1 | 1 | 2.29e-73 | 7.7e-69 | |
110 | 18 | Lymphoid | all | RPL18A | 6142 | 10311 | 0.34 | 0.79 | 0.72 | 2.08e-32 | 7e-28 | |
110 | 18 | Lymphoid | all | ATP6 | 4508 | 7414 | 0.33 | 1 | 1 | 9.24e-60 | 3.11e-55 | |
110 | 18 | Lymphoid | all | SARAF | 51669 | 28789 | 0.32 | 0.33 | 0.32 | 5.77e-05 | 1 | |
110 | 18 | Lymphoid | all | RPL13 | 6137 | 10303 | 0.31 | 0.92 | 0.87 | 4.55e-41 | 1.53e-36 | |
110 | 18 | Lymphoid | all | RPL39 | 6170 | 10350 | 0.31 | 0.92 | 0.89 | 2.48e-42 | 8.36e-38 | |
110 | 18 | Lymphoid | all | RPL28 | 6158 | 10330 | 0.3 | 0.8 | 0.76 | 7.13e-28 | 2.4e-23 | |
110 | 18 | Lymphoid | all | RPL23A | 6147 | 10317 | 0.3 | 0.83 | 0.79 | 1.94e-30 | 6.54e-26 | |
110 | 18 | Lymphoid | all | RPL27A | 6157 | 10329 | 0.3 | 0.74 | 0.72 | 5.7e-18 | 1.92e-13 | |
110 | 18 | Lymphoid | all | RPL13A | 23521 | 10304 | 0.29 | 0.9 | 0.86 | 3.09e-34 | 1.04e-29 | |
110 | 18 | Lymphoid | all | ND3 | 4537 | 7458 | 0.29 | 1 | 1 | 1.64e-38 | 5.54e-34 | |
110 | 18 | Lymphoid | all | RPS10 | 6204 | 10383 | 0.29 | 0.41 | 0.39 | 3.57e-06 | 0.12 | |
110 | 18 | Lymphoid | all | GPBP1 | 65056 | 29520 | 0.27 | 0.27 | 0.25 | 0.001770886689926 | 1 | |
110 | 18 | Lymphoid | all | RPL21 | 6144 | 10313 | 0.27 | 0.92 | 0.89 | 5.78e-33 | 1.95e-28 | |
110 | 18 | Lymphoid | all | H3F3B | 3021 | 4765 | 0.26 | 0.66 | 0.65 | 0.000226478869054 | 1 | |
110 | 18 | Lymphoid | all | EEF1B2 | 1933 | 3208 | 0.26 | 0.36 | 0.35 | 0.000653540638168 | 1 | |
110 | 18 | Lymphoid | all | MYL12A | 10627 | 16701 | 0.26 | 0.46 | 0.44 | 6.45e-07 | 0.02 | |
110 | 18 | Lymphoid | all | ARPC2 | 10109 | 705 | 0.25 | 0.35 | 0.32 | 2.22e-05 | 0.74 | |
110 | 18 | Lymphoid | all | RPS3A | 6189 | 10421 | 0.25 | 0.77 | 0.74 | 9.43e-19 | 3.18e-14 | |
110 | 18 | Lymphoid | all | RPLP1 | 6176 | 10372 | 0.25 | 0.89 | 0.87 | 6.14e-16 | 2.07e-11 |