Marker Genes
Dataset: Novel Human Kidney Cell Subsets Identified by Mux-Seq
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Adult
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 9000000002
- subset name: all
- total genes: 33694
- clustering: Seurat
- pseudotime: Monocle 2
- link: https://www.biorxiv.org/content/10.1101/2020.03.02.973925v1.full
Rows:139
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
110 | 11 | Mesangial 1 | all | TAGLN | 6876 | 11553 | 2.81 | 0.86 | 0.08 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | RGS5 | 8490 | 10001 | 2.5 | 0.78 | 0.07 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | ACTA2 | 59 | 130 | 2.27 | 0.67 | 0.04 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | MYH11 | 4629 | 7569 | 2.11 | 0.65 | 0.02 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | TPM2 | 7169 | 12011 | 1.95 | 0.65 | 0.07 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | C11orf96 | 387763 | 38675 | 1.94 | 0.59 | 0.03 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | MYL9 | 10398 | 15754 | 1.93 | 0.75 | 0.15 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | CALD1 | 800 | 1441 | 1.88 | 0.82 | 0.22 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | ADIRF | 10974 | 24043 | 1.88 | 0.96 | 0.43 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | PLN | 5350 | 9080 | 1.78 | 0.5 | 0.01 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | RERGL | 79785 | 26213 | 1.59 | 0.46 | 0.01 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | SPARCL1 | 8404 | 11220 | 1.54 | 0.59 | 0.09 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | CRIP1 | 1396 | 2360 | 1.31 | 0.74 | 0.24 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | MFGE8 | 4240 | 7036 | 1.22 | 0.39 | 0.03 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | MGP | 4256 | 7060 | 1.22 | 0.63 | 0.16 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | PLAC9 | 219348 | 19255 | 1.21 | 0.41 | 0.03 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | CAV1 | 857 | 1527 | 1.2 | 0.44 | 0.06 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | LBH | 81606 | 29532 | 1.12 | 0.41 | 0.09 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | MYLK | 4638 | 7590 | 1.07 | 0.46 | 0.12 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | DSTN | 11034 | 15750 | 1.05 | 0.87 | 0.63 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | SNCG | 6623 | 11141 | 1.01 | 0.28 | 0.03 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | PPP1R14A | 94274 | 14871 | 1 | 0.31 | 0.03 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | CSRP2 | 1466 | 2470 | 0.98 | 0.34 | 0.06 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | FRZB | 2487 | 3959 | 0.97 | 0.29 | 0.02 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | NDUFA4L2 | 56901 | 29836 | 0.97 | 0.26 | 0.01 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | MT1M | 4499 | 14296 | 0.94 | 0.43 | 0.13 | 3.16e-288 | 1.06e-283 | |
110 | 11 | Mesangial 1 | all | FLNA | 2316 | 3754 | 0.92 | 0.43 | 0.14 | 1.28e-279 | 4.32e-275 | |
110 | 11 | Mesangial 1 | all | BGN | 633 | 1044 | 0.92 | 0.37 | 0.07 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | MCAM | 4162 | 6934 | 0.9 | 0.29 | 0.03 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | NOTCH3 | 4854 | 7883 | 0.9 | 0.31 | 0.04 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | LGALS1 | 3956 | 6561 | 0.89 | 0.71 | 0.29 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | PTN | 5764 | 9630 | 0.88 | 0.32 | 0.07 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | AC013461.1 | NULL | 0.88 | 0.3 | 0.04 | 0 | 0 | ||
110 | 11 | Mesangial 1 | all | NTRK3 | 4916 | 8033 | 0.88 | 0.26 | 0.01 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | HES4 | 57801 | 24149 | 0.87 | 0.31 | 0.07 | 1.26e-302 | 4.24e-298 | |
110 | 11 | Mesangial 1 | all | A2M | 2 | 7 | 0.87 | 0.4 | 0.09 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | VIM | 7431 | 12692 | 0.86 | 0.64 | 0.29 | 8.77e-260 | 2.95e-255 | |
110 | 11 | Mesangial 1 | all | PTP4A3 | 11156 | 9636 | 0.86 | 0.29 | 0.04 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | ZFHX3 | 463 | 777 | 0.86 | 0.38 | 0.13 | 3.71e-230 | 1.25e-225 | |
110 | 11 | Mesangial 1 | all | MT2A | 4502 | 7406 | 0.85 | 0.87 | 0.63 | 1.47e-256 | 4.97e-252 | |
110 | 11 | Mesangial 1 | all | TPM1 | 7168 | 12010 | 0.83 | 0.65 | 0.36 | 5.19e-215 | 1.75e-210 | |
110 | 11 | Mesangial 1 | all | PPP1R12B | 4660 | 7619 | 0.82 | 0.32 | 0.06 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | JUNB | 3726 | 6205 | 0.81 | 0.63 | 0.45 | 2.34e-119 | 7.87e-115 | |
110 | 11 | Mesangial 1 | all | TSC22D1 | 8848 | 16826 | 0.81 | 0.64 | 0.39 | 1.45e-180 | 4.89e-176 | |
110 | 11 | Mesangial 1 | all | FXYD1 | 5348 | 4025 | 0.77 | 0.25 | 0.02 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | SOD3 | 6649 | 11181 | 0.76 | 0.49 | 0.13 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | KANK2 | 25959 | 29300 | 0.75 | 0.29 | 0.07 | 7.17e-284 | 2.42e-279 | |
110 | 11 | Mesangial 1 | all | LHFPL6 | 10186 | 6586 | 0.75 | 0.27 | 0.04 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | MEF2C | 4208 | 6996 | 0.73 | 0.37 | 0.11 | 1.64e-249 | 5.51e-245 | |
110 | 11 | Mesangial 1 | all | MTHFD2 | 10797 | 7434 | 0.73 | 0.26 | 0.03 | 0 | 0 | |
110 | 11 | Mesangial 1 | all | CAVIN1 | 284119 | 9688 | 0.73 | 0.38 | 0.13 | 3.31e-216 | 1.11e-211 | |
110 | 11 | Mesangial 1 | all | CAVIN3 | 112464 | 9400 | 0.72 | 0.32 | 0.1 | 1.69e-212 | 5.71e-208 | |
110 | 11 | Mesangial 1 | all | TIMP3 | 7078 | 11822 | 0.68 | 0.62 | 0.29 | 5.12e-240 | 1.73e-235 | |
110 | 11 | Mesangial 1 | all | JAG1 | 182 | 6188 | 0.68 | 0.31 | 0.1 | 1.02e-173 | 3.45e-169 | |
110 | 11 | Mesangial 1 | all | SORBS2 | 8470 | 24098 | 0.67 | 0.34 | 0.16 | 5.98e-112 | 2.01e-107 | |
110 | 11 | Mesangial 1 | all | PPP1R12A | 4659 | 7618 | 0.67 | 0.34 | 0.13 | 1.25e-152 | 4.22e-148 | |
110 | 11 | Mesangial 1 | all | EPAS1 | 2034 | 3374 | 0.67 | 0.41 | 0.13 | 3.94e-249 | 1.33e-244 | |
110 | 11 | Mesangial 1 | all | PALLD | 23022 | 17068 | 0.66 | 0.32 | 0.1 | 3.31e-183 | 1.12e-178 | |
110 | 11 | Mesangial 1 | all | NET1 | 10276 | 14592 | 0.64 | 0.26 | 0.07 | 1.47e-189 | 4.96e-185 | |
110 | 11 | Mesangial 1 | all | TINAGL1 | 64129 | 19168 | 0.63 | 0.31 | 0.12 | 2.61e-151 | 8.79e-147 | |
110 | 11 | Mesangial 1 | all | RGCC | 28984 | 20369 | 0.62 | 0.27 | 0.07 | 3.77e-221 | 1.27e-216 | |
110 | 11 | Mesangial 1 | all | CSRP1 | 1465 | 2469 | 0.61 | 0.26 | 0.08 | 2.21e-156 | 7.45e-152 | |
110 | 11 | Mesangial 1 | all | TNS1 | 7145 | 11973 | 0.6 | 0.33 | 0.13 | 1.36e-135 | 4.58e-131 | |
110 | 11 | Mesangial 1 | all | ID3 | 3399 | 5362 | 0.59 | 0.35 | 0.16 | 8.13e-108 | 2.74e-103 | |
110 | 11 | Mesangial 1 | all | UTRN | 7402 | 12635 | 0.59 | 0.32 | 0.12 | 2.54e-152 | 8.54e-148 | |
110 | 11 | Mesangial 1 | all | LPP | 4026 | 6679 | 0.57 | 0.39 | 0.22 | 1.04e-83 | 3.51e-79 | |
110 | 11 | Mesangial 1 | all | ACTN1 | 87 | 163 | 0.56 | 0.28 | 0.1 | 4.95e-149 | 1.67e-144 | |
110 | 11 | Mesangial 1 | all | ADAMTS1 | 9510 | 217 | 0.56 | 0.31 | 0.14 | 6.31e-97 | 2.13e-92 | |
110 | 11 | Mesangial 1 | all | ZBTB16 | 7704 | 12930 | 0.56 | 0.28 | 0.1 | 1.21e-128 | 4.08e-124 | |
110 | 11 | Mesangial 1 | all | CRIP2 | 1397 | 2361 | 0.53 | 0.47 | 0.26 | 7.16e-98 | 2.41e-93 | |
110 | 11 | Mesangial 1 | all | SELENOM | 140606 | 30397 | 0.53 | 0.47 | 0.3 | 8.53e-75 | 2.88e-70 | |
110 | 11 | Mesangial 1 | all | GADD45B | 4616 | 4096 | 0.53 | 0.53 | 0.37 | 1.3e-66 | 4.38e-62 | |
110 | 11 | Mesangial 1 | all | SELENOW | 6415 | 10752 | 0.51 | 0.49 | 0.3 | 1.21e-81 | 4.08e-77 | |
110 | 11 | Mesangial 1 | all | JUN | 3725 | 6204 | 0.51 | 0.68 | 0.59 | 1.31e-44 | 4.4e-40 | |
110 | 11 | Mesangial 1 | all | TLN1 | 7094 | 11845 | 0.5 | 0.3 | 0.15 | 2.24e-83 | 7.55e-79 | |
110 | 11 | Mesangial 1 | all | CEBPB | 1051 | 1834 | 0.49 | 0.37 | 0.18 | 1.17e-93 | 3.95e-89 | |
110 | 11 | Mesangial 1 | all | FKBP5 | 2289 | 3721 | 0.48 | 0.35 | 0.17 | 1.56e-93 | 5.24e-89 | |
110 | 11 | Mesangial 1 | all | ID1 | 3397 | 5360 | 0.48 | 0.34 | 0.18 | 2.41e-73 | 8.12e-69 | |
110 | 11 | Mesangial 1 | all | ROCK1 | 6093 | 10251 | 0.48 | 0.26 | 0.12 | 5.47e-82 | 1.84e-77 | |
110 | 11 | Mesangial 1 | all | NR2F2 | 7026 | 7976 | 0.47 | 0.41 | 0.25 | 4.27e-65 | 1.44e-60 | |
110 | 11 | Mesangial 1 | all | FOSB | 2354 | 3797 | 0.47 | 0.55 | 0.42 | 2.22e-49 | 7.47e-45 | |
110 | 11 | Mesangial 1 | all | Sep-19 | NULL | 0.47 | 0.44 | 0.29 | 8.76e-53 | 2.95e-48 | ||
110 | 11 | Mesangial 1 | all | MYL6 | 4637 | 7587 | 0.45 | 0.75 | 0.62 | 1.64e-85 | 5.52e-81 | |
110 | 11 | Mesangial 1 | all | ZFP36 | 7538 | 12862 | 0.44 | 0.57 | 0.43 | 1.64e-55 | 5.52e-51 | |
110 | 11 | Mesangial 1 | all | MT1E | 4493 | 7397 | 0.44 | 0.63 | 0.41 | 6.44e-103 | 2.17e-98 | |
110 | 11 | Mesangial 1 | all | NUPR1 | 26471 | 29990 | 0.43 | 0.34 | 0.15 | 1.72e-100 | 5.81e-96 | |
110 | 11 | Mesangial 1 | all | ID4 | 3400 | 5363 | 0.43 | 0.26 | 0.13 | 1.32e-62 | 4.43e-58 | |
110 | 11 | Mesangial 1 | all | COX7A1 | 1346 | 2287 | 0.43 | 0.44 | 0.24 | 4.34e-83 | 1.46e-78 | |
110 | 11 | Mesangial 1 | all | PDLIM1 | 9124 | 2067 | 0.43 | 0.25 | 0.09 | 7.75e-106 | 2.61e-101 | |
110 | 11 | Mesangial 1 | all | FOS | 2353 | 3796 | 0.43 | 0.78 | 0.67 | 1.85e-61 | 6.24e-57 | |
110 | 11 | Mesangial 1 | all | CEBPD | 1052 | 1835 | 0.43 | 0.48 | 0.35 | 3.06e-43 | 1.03e-38 | |
110 | 11 | Mesangial 1 | all | TIMP1 | 7076 | 11820 | 0.42 | 0.38 | 0.24 | 1.22e-44 | 4.1e-40 | |
110 | 11 | Mesangial 1 | all | TMEM47 | 83604 | 18515 | 0.41 | 0.25 | 0.1 | 1.2e-87 | 4.04e-83 | |
110 | 11 | Mesangial 1 | all | TBC1D1 | 23216 | 11578 | 0.41 | 0.26 | 0.12 | 1.58e-71 | 5.31e-67 | |
110 | 11 | Mesangial 1 | all | CPM | 1368 | 2311 | 0.41 | 0.32 | 0.19 | 9.11e-54 | 3.07e-49 | |
110 | 11 | Mesangial 1 | all | EGR1 | 1958 | 3238 | 0.4 | 0.64 | 0.52 | 2.37e-49 | 8e-45 | |
110 | 11 | Mesangial 1 | all | SH3BGRL | 6451 | 10823 | 0.4 | 0.37 | 0.24 | 1.05e-47 | 3.55e-43 | |
110 | 11 | Mesangial 1 | all | EPS8 | 2059 | 3420 | 0.38 | 0.25 | 0.12 | 7.36e-61 | 2.48e-56 | |
110 | 11 | Mesangial 1 | all | NR4A1 | 3164 | 7980 | 0.38 | 0.36 | 0.22 | 2.11e-50 | 7.12e-46 | |
110 | 11 | Mesangial 1 | all | RHOB | 388 | 668 | 0.38 | 0.64 | 0.5 | 9.91e-56 | 3.34e-51 | |
110 | 11 | Mesangial 1 | all | TM4SF1 | 4071 | 11853 | 0.38 | 0.29 | 0.12 | 6.07e-92 | 2.04e-87 | |
110 | 11 | Mesangial 1 | all | BTG1 | 694 | 1130 | 0.37 | 0.57 | 0.45 | 3.31e-44 | 1.12e-39 | |
110 | 11 | Mesangial 1 | all | NUDT4 | 11163 | 8051 | 0.37 | 0.43 | 0.27 | 1.36e-51 | 4.57e-47 | |
110 | 11 | Mesangial 1 | all | TACC1 | 6867 | 11522 | 0.37 | 0.28 | 0.14 | 1.79e-62 | 6.03e-58 | |
110 | 11 | Mesangial 1 | all | LMO4 | 8543 | 6644 | 0.37 | 0.26 | 0.14 | 2.98e-51 | 1e-46 | |
110 | 11 | Mesangial 1 | all | ITGB1 | 3688 | 6153 | 0.37 | 0.53 | 0.37 | 2.4e-50 | 8.09e-46 | |
110 | 11 | Mesangial 1 | all | KLF9 | 687 | 1123 | 0.36 | 0.32 | 0.19 | 7.04e-48 | 2.37e-43 | |
110 | 11 | Mesangial 1 | all | ACTB | 60 | 132 | 0.36 | 0.91 | 0.8 | 5.98e-99 | 2.02e-94 | |
110 | 11 | Mesangial 1 | all | IER2 | 9592 | 28871 | 0.36 | 0.53 | 0.43 | 8.77e-30 | 2.96e-25 | |
110 | 11 | Mesangial 1 | all | CRIM1 | 51232 | 2359 | 0.35 | 0.38 | 0.23 | 4.42e-53 | 1.49e-48 | |
110 | 11 | Mesangial 1 | all | GSN | 2934 | 4620 | 0.35 | 0.35 | 0.21 | 3.19e-53 | 1.08e-48 | |
110 | 11 | Mesangial 1 | all | CDKN1A | 1026 | 1784 | 0.34 | 0.28 | 0.17 | 7.82e-35 | 2.64e-30 | |
110 | 11 | Mesangial 1 | all | CLMN | 79789 | 19972 | 0.33 | 0.27 | 0.15 | 5.46e-49 | 1.84e-44 | |
110 | 11 | Mesangial 1 | all | PLS3 | 5358 | 9091 | 0.33 | 0.29 | 0.18 | 8.28e-36 | 2.79e-31 | |
110 | 11 | Mesangial 1 | all | PPP1CB | 5500 | 9282 | 0.33 | 0.51 | 0.41 | 4.97e-26 | 1.68e-21 | |
110 | 11 | Mesangial 1 | all | CCN1 | 3491 | 2654 | 0.33 | 0.27 | 0.18 | 1.73e-26 | 5.82e-22 | |
110 | 11 | Mesangial 1 | all | TSC22D3 | 1831 | 3051 | 0.33 | 0.4 | 0.27 | 3.87e-39 | 1.3e-34 | |
110 | 11 | Mesangial 1 | all | CLIC4 | 25932 | 13518 | 0.33 | 0.27 | 0.14 | 1.16e-51 | 3.92e-47 | |
110 | 11 | Mesangial 1 | all | KLF2 | 10365 | 6347 | 0.32 | 0.32 | 0.17 | 3.38e-52 | 1.14e-47 | |
110 | 11 | Mesangial 1 | all | HSPB1 | 3315 | 5246 | 0.31 | 0.8 | 0.66 | 1.84e-59 | 6.2e-55 | |
110 | 11 | Mesangial 1 | all | SLC38A2 | 54407 | 13448 | 0.3 | 0.36 | 0.25 | 3.7e-32 | 1.25e-27 | |
110 | 11 | Mesangial 1 | all | ARID5B | 84159 | 17362 | 0.29 | 0.35 | 0.24 | 3.76e-30 | 1.27e-25 | |
110 | 11 | Mesangial 1 | all | CALM2 | 805 | 1445 | 0.29 | 0.78 | 0.68 | 1.07e-49 | 3.6e-45 | |
110 | 11 | Mesangial 1 | all | IGFBP7 | 3490 | 5476 | 0.28 | 0.81 | 0.7 | 9.33e-44 | 3.14e-39 | |
110 | 11 | Mesangial 1 | all | PTMA | 5757 | 9623 | 0.28 | 0.95 | 0.9 | 3.88e-87 | 1.31e-82 | |
110 | 11 | Mesangial 1 | all | IFITM2 | 10581 | 5413 | 0.28 | 0.42 | 0.3 | 4.08e-29 | 1.37e-24 | |
110 | 11 | Mesangial 1 | all | BCAM | 4059 | 6722 | 0.28 | 0.42 | 0.3 | 1.59e-33 | 5.34e-29 | |
110 | 11 | Mesangial 1 | all | EID1 | 23741 | 1191 | 0.27 | 0.49 | 0.38 | 1.01e-26 | 3.39e-22 | |
110 | 11 | Mesangial 1 | all | MT1X | 4501 | 7405 | 0.27 | 0.58 | 0.39 | 1.67e-73 | 5.63e-69 | |
110 | 11 | Mesangial 1 | all | PTMS | 5763 | 9629 | 0.26 | 0.36 | 0.25 | 8.36e-29 | 2.82e-24 | |
110 | 11 | Mesangial 1 | all | IGFBP5 | 3488 | 5474 | 0.26 | 0.63 | 0.27 | 1.96e-211 | 6.6e-207 | |
110 | 11 | Mesangial 1 | all | C12orf57 | 113246 | 29521 | 0.26 | 0.38 | 0.28 | 1.25e-21 | 4.2e-17 | |
110 | 11 | Mesangial 1 | all | PNRC1 | 10957 | 17278 | 0.26 | 0.41 | 0.32 | 7.38e-21 | 2.49e-16 | |
110 | 11 | Mesangial 1 | all | H3F3B | 3021 | 4765 | 0.26 | 0.73 | 0.65 | 6.59e-38 | 2.22e-33 | |
110 | 11 | Mesangial 1 | all | HCFC1R1 | 54985 | 21198 | 0.25 | 0.31 | 0.21 | 1.75e-24 | 5.89e-20 | |
110 | 11 | Mesangial 1 | all | YBX1 | 4904 | 8014 | 0.25 | 0.59 | 0.49 | 5.59e-26 | 1.88e-21 | |
110 | 11 | Mesangial 1 | all | LMNA | 4000 | 6636 | 0.25 | 0.37 | 0.27 | 2.99e-24 | 1.01e-19 | |
110 | 11 | Mesangial 1 | all | CD151 | 977 | 1630 | 0.25 | 0.35 | 0.24 | 1.51e-24 | 5.1e-20 | |
110 | 11 | Mesangial 1 | all | IFITM3 | 10410 | 5414 | 0.25 | 0.62 | 0.45 | 4.26e-46 | 1.43e-41 |