Marker Genes
Dataset: Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk
- tissue: Kidney
- ontology: Kidney
- genotype: C57BL/6
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 31118232
- subset name: all
- total genes: 13116
- clustering: Seurat, edgeR
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108291
Rows:50
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
105 | 8 | K7 | Renal Vesicle | all | Hbb-b2 | 15130 | 96022 | 3.55 | 4.67e-101 | |||
105 | 8 | K7 | Renal Vesicle | all | Hba-a2 | 110257 | 96016 | 3.45 | 3.35e-98 | |||
105 | 8 | K7 | Renal Vesicle | all | Hba-a1 | 15122 | 96015 | 3.38 | 1.84e-95 | |||
105 | 8 | K7 | Renal Vesicle | all | Hbb-b1 | 15129 | 96021 | 2.97 | 7.45e-97 | |||
105 | 8 | K7 | Renal Vesicle | all | C1qtnf12 | 67389 | 1914639 | 2.81 | 2.99e-154 | |||
105 | 8 | K7 | Renal Vesicle | all | Wnt4 | 22417 | 98957 | 2.52 | 5.15e-46 | |||
105 | 8 | K7 | Renal Vesicle | all | Tmem100 | 67888 | 1915138 | 2.51 | 3.02e-55 | |||
105 | 8 | K7 | Renal Vesicle | all | Bmper | 73230 | 1920480 | 2.39 | 1.29e-63 | |||
105 | 8 | K7 | Renal Vesicle | all | Pax2 | 18504 | 97486 | 2.37 | 5.12e-90 | |||
105 | 8 | K7 | Renal Vesicle | all | Alas2 | 11656 | 87990 | 2.24 | 3.75e-11 | |||
105 | 8 | K7 | Renal Vesicle | all | Col9a1 | 12839 | 88465 | 2.22 | 5.73e-46 | |||
105 | 8 | K7 | Renal Vesicle | all | Eya1 | 14048 | 109344 | 2.21 | 6.18e-71 | |||
105 | 8 | K7 | Renal Vesicle | all | Minar2 | 225583 | 2442934 | 2.19 | 1.7e-64 | |||
105 | 8 | K7 | Renal Vesicle | all | Fam107a | 268709 | 3041256 | 2.18 | 6.62e-57 | |||
105 | 8 | K7 | Renal Vesicle | all | Wt1 | 22431 | 98968 | 2.16 | 6.8e-69 | |||
105 | 8 | K7 | Renal Vesicle | all | Frzb | 20378 | 892032 | 2.11 | 7.2e-39 | |||
105 | 8 | K7 | Renal Vesicle | all | Gxylt2 | 232313 | 2682940 | 2.09 | 1.41e-42 | |||
105 | 8 | K7 | Renal Vesicle | all | Kazald1 | 107250 | 2147606 | 2.06 | 2.48e-47 | |||
105 | 8 | K7 | Renal Vesicle | all | Mycn | 18109 | 97357 | 2.05 | 4.2e-43 | |||
105 | 8 | K7 | Renal Vesicle | all | Snap91 | 20616 | 109132 | 2.02 | 2.76e-45 | |||
105 | 8 | K7 | Renal Vesicle | all | Spock2 | 94214 | 1891351 | 1.9 | 1.01e-41 | |||
105 | 8 | K7 | Renal Vesicle | all | Col2a1 | 12824 | 88452 | 1.83 | 2.41e-40 | |||
105 | 8 | K7 | Renal Vesicle | all | Shisa2 | 219134 | 2444716 | 1.81 | 2.74e-32 | |||
105 | 8 | K7 | Renal Vesicle | all | Igfbp5 | 16011 | 96440 | 1.8 | 1.31e-17 | |||
105 | 8 | K7 | Renal Vesicle | all | Uncx | 22255 | 108013 | 1.79 | 3.13e-31 | |||
105 | 8 | K7 | Renal Vesicle | all | Cdh2 | 12558 | 88355 | 1.78 | 2.13e-36 | |||
105 | 8 | K7 | Renal Vesicle | all | Aldh1a2 | 19378 | 107928 | 1.76 | 9.33e-29 | |||
105 | 8 | K7 | Renal Vesicle | all | Hoxc10 | 209448 | 96192 | 1.68 | 1.16e-36 | |||
105 | 8 | K7 | Renal Vesicle | all | Hs3st6 | 328779 | 3580487 | 1.61 | 4.48e-33 | |||
105 | 8 | K7 | Renal Vesicle | all | Tafa5 | 106014 | 2146182 | 1.58 | 3.68e-26 | |||
105 | 8 | K7 | Renal Vesicle | all | Sncaip | 67847 | 1915097 | 1.57 | 1.21e-27 | |||
105 | 8 | K7 | Renal Vesicle | all | Pdgfc | 54635 | 1859631 | 1.57 | 2.64e-23 | |||
105 | 8 | K7 | Renal Vesicle | all | Hoxc9 | 15427 | 96199 | 1.53 | 5.66e-22 | |||
105 | 8 | K7 | Renal Vesicle | all | Cd24a | 12484 | 88323 | 1.53 | 3.03e-25 | |||
105 | 8 | K7 | Renal Vesicle | all | Padi2 | 18600 | 1338892 | 1.48 | 2.33e-22 | |||
105 | 8 | K7 | Renal Vesicle | all | Slit2 | 20563 | 1315205 | 1.48 | 2.61e-14 | |||
105 | 8 | K7 | Renal Vesicle | all | Lsp1 | 16985 | 96832 | 1.47 | 2.46e-15 | |||
105 | 8 | K7 | Renal Vesicle | all | Tmem35a | 67564 | 1914814 | 1.46 | 9.27e-20 | |||
105 | 8 | K7 | Renal Vesicle | all | Rnase12 | 497106 | 3528588 | 1.46 | 1.09e-19 | |||
105 | 8 | K7 | Renal Vesicle | all | Ncam1 | 17967 | 97281 | 1.46 | 5.35e-15 | |||
105 | 8 | K7 | Renal Vesicle | all | Snca | 20617 | 1277151 | 1.45 | 1.3e-07 | |||
105 | 8 | K7 | Renal Vesicle | all | Six2 | 20472 | 102778 | 1.44 | 1.22e-18 | |||
105 | 8 | K7 | Renal Vesicle | all | Ripply2 | 382089 | 2685968 | 1.44 | 3.56e-31 | |||
105 | 8 | K7 | Renal Vesicle | all | Clmp | 71566 | 1918816 | 1.42 | 1.24e-18 | |||
105 | 8 | K7 | Renal Vesicle | all | Klhdc8a | 213417 | 2442630 | 1.39 | 1.32e-20 | |||
105 | 8 | K7 | Renal Vesicle | all | Notch2 | 18129 | 97364 | 1.39 | 3.8e-06 | |||
105 | 8 | K7 | Renal Vesicle | all | Jsrp1 | 71912 | 1916700 | 1.38 | 1.08e-17 | |||
105 | 8 | K7 | Renal Vesicle | all | Sox11 | 20666 | 98359 | 1.37 | 2.8e-12 | |||
105 | 8 | K7 | Renal Vesicle | all | Gas2 | 14453 | 95657 | 1.36 | 2.26e-13 | |||
105 | 8 | K7 | Renal Vesicle | all | Saa1 | 20208 | 98221 | 1.33 | 1.75e-27 |