Marker Genes
Dataset: Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk
- tissue: Kidney
- ontology: Kidney
- genotype: C57BL/6
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 31118232
- subset name: all
- total genes: 13116
- clustering: Seurat, edgeR
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108291
Rows:50
| dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105 | 7 | K6 | S-Shaped Body | all | Lhx1 | 16869 | 99783 | 4.05 | 0 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Pcp4 | 18546 | 97509 | 3.69 | 2.94E-142 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Cldn5 | 12741 | 1276112 | 3.62 | 6.53E-246 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Sfrp2 | 20319 | 108078 | 3.59 | 9.3E-164 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Lhx1os | 78365 | 1925615 | 3.52 | 2.32E-253 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Osr2 | 107587 | 1930813 | 3.29 | 4.29E-142 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Clec18a | 353287 | 2672935 | 3.08 | 3.74E-242 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Clu | 12759 | 88423 | 3.02 | 3.09E-174 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Uncx | 22255 | 108013 | 2.97 | 5.75E-179 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Npy | 109648 | 97374 | 2.96 | 1.24E-129 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Ccnd1 | 12443 | 88313 | 2.93 | 8.93E-140 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Pax8 | 18510 | 97492 | 2.93 | 1.56E-244 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Wnt4 | 22417 | 98957 | 2.91 | 6.57E-78 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Mafb | 16658 | 104555 | 2.78 | 1.16E-70 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Sox11 | 20666 | 98359 | 2.7 | 9.72E-184 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Jag1 | 16449 | 1095416 | 2.62 | 3.24E-98 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Eva1a | 232146 | 2385247 | 2.56 | 1.61E-136 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Hes5 | 15208 | 104876 | 2.56 | 9.41E-67 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Hey1 | 15213 | 1341800 | 2.52 | 3.51E-103 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Wt1 | 22431 | 98968 | 2.46 | 4.83E-131 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Nppc | 18159 | 97369 | 2.44 | 2.31E-48 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Dll1 | 13388 | 104659 | 2.39 | 6.04E-64 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Emid1 | 140703 | 2155091 | 2.38 | 3.84E-115 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Gm266 | 212539 | 2685112 | 2.37 | 9.63E-140 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Tnni1 | 21952 | 105073 | 2.31 | 5.13E-75 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Nrarp | 67122 | 1914372 | 2.27 | 1.16E-67 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Tmem100 | 67888 | 1915138 | 2.2 | 3.33E-48 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Emx2 | 13797 | 95388 | 2.18 | 2.58E-85 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Defb25 | 654459 | 3651158 | 2.13 | 2.01E-60 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Pdzd2 | 68070 | 1922394 | 2.12 | 2.91E-62 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Wfdc2 | 67701 | 1914951 | 2.11 | 4.57E-62 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Ngfr | 18053 | 97323 | 2.11 | 1.54E-54 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Fgf8 | 14179 | 99604 | 2.1 | 1.15E-39 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Bmp2 | 12156 | 88177 | 2.09 | 2.04E-34 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Scube3 | 268935 | 3045253 | 2.08 | 6.01E-56 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Kdm2b | 30841 | 1354737 | 2.07 | 1.1E-50 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Epha4 | 13838 | 98277 | 2.02 | 2.83E-38 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Nrip2 | 60345 | 1891884 | 2.02 | 3.76E-54 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Oxtr | 18430 | 109147 | 2.01 | 9.09E-68 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Lfng | 16848 | 1095413 | 2 | 2.48E-41 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Prnp | 19122 | 97769 | 1.99 | 1.67E-40 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Hs3st3b1 | 54710 | 1333853 | 1.98 | 6.11E-71 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Arl4c | 320982 | 2445172 | 1.95 | 9.17E-58 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Pax2 | 18504 | 97486 | 1.94 | 2.78E-63 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Gja1 | 14609 | 95713 | 1.91 | 1.45E-46 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Ndnf | 68169 | 1915419 | 1.9 | 1.42E-67 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Pdgfa | 18590 | 97527 | 1.89 | 3.25E-42 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Lef1 | 16842 | 96770 | 1.88 | 2.3E-51 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Tm6sf1 | 107769 | 1933209 | 1.86 | 1.34E-70 | |||
| 105 | 7 | K6 | S-Shaped Body | all | Car4 | 12351 | 1096574 | 1.84 | 1.94E-67 |