Marker Genes
Dataset: Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk
- tissue: Kidney
- ontology: Kidney
- genotype: C57BL/6
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 31118232
- subset name: all
- total genes: 13116
- clustering: Seurat, edgeR
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108291
Rows:50
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
105 | 5 | K4 | Medullary Stroma | all | Igfbp3 | 16009 | 96438 | 4.63 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Fbln5 | 23876 | 1346091 | 4.35 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Acta2 | 11475 | 87909 | 4.2 | 1.69e-272 | |||
105 | 5 | K4 | Medullary Stroma | all | Mgp | 17313 | 96976 | 4.14 | 9.14e-273 | |||
105 | 5 | K4 | Medullary Stroma | all | Dcn | 13179 | 94872 | 4.13 | 2.32e-209 | |||
105 | 5 | K4 | Medullary Stroma | all | Ace2 | 70008 | 1917258 | 4.06 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Cfh | 12628 | 88385 | 4 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Col3a1 | 12825 | 88453 | 3.98 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Vegfd | 14205 | 108037 | 3.97 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Col1a1 | 12842 | 88467 | 3.81 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Ndufa4l2 | 407790 | 3039567 | 3.77 | 1.25e-257 | |||
105 | 5 | K4 | Medullary Stroma | all | Rgs5 | 19737 | 1098434 | 3.71 | 9.44e-280 | |||
105 | 5 | K4 | Medullary Stroma | all | G0s2 | 14373 | 1316737 | 3.71 | 1.8e-296 | |||
105 | 5 | K4 | Medullary Stroma | all | Myl9 | 98932 | 2138915 | 3.7 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Col6a1 | 12833 | 88459 | 3.68 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Gucy1a1 | 60596 | 1926562 | 3.66 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Col6a2 | 12834 | 88460 | 3.65 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Aspn | 66695 | 1913945 | 3.63 | 2.67e-239 | |||
105 | 5 | K4 | Medullary Stroma | all | Col14a1 | 12818 | 1341272 | 3.61 | 1.53e-286 | |||
105 | 5 | K4 | Medullary Stroma | all | Clca3a1 | 12722 | 1316732 | 3.56 | 6.21e-257 | |||
105 | 5 | K4 | Medullary Stroma | all | Bgn | 12111 | 88158 | 3.52 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Fhl2 | 14200 | 1338762 | 3.48 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Lox | 16948 | 96817 | 3.46 | 1.56e-246 | |||
105 | 5 | K4 | Medullary Stroma | all | Col1a2 | 12843 | 88468 | 3.45 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Meg3 | 17263 | 1202886 | 3.45 | 6.42e-211 | |||
105 | 5 | K4 | Medullary Stroma | all | Olfml3 | 99543 | 1914877 | 3.42 | 1.61e-306 | |||
105 | 5 | K4 | Medullary Stroma | all | Tcf21 | 21412 | 1202715 | 3.41 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Ptn | 19242 | 97804 | 3.4 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Ebf1 | 13591 | 95275 | 3.38 | 4.07e-289 | |||
105 | 5 | K4 | Medullary Stroma | all | Plac8 | 231507 | 2445289 | 3.34 | 3.38e-207 | |||
105 | 5 | K4 | Medullary Stroma | all | Rasgrp2 | 19395 | 1333849 | 3.33 | 2.57e-294 | |||
105 | 5 | K4 | Medullary Stroma | all | Cald1 | 109624 | 88250 | 3.32 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Cldn11 | 18417 | 106925 | 3.32 | 2.27e-142 | |||
105 | 5 | K4 | Medullary Stroma | all | Lbh | 77889 | 1925139 | 3.3 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Sfrp1 | 20377 | 892014 | 3.26 | 1.58e-268 | |||
105 | 5 | K4 | Medullary Stroma | all | Serping1 | 12258 | 894696 | 3.25 | 4.58147001731283e-312 | |||
105 | 5 | K4 | Medullary Stroma | all | Ecm1 | 13601 | 103060 | 3.19 | 4.56e-211 | |||
105 | 5 | K4 | Medullary Stroma | all | Thbs2 | 21826 | 98738 | 3.19 | 2.82e-144 | |||
105 | 5 | K4 | Medullary Stroma | all | Ogn | 18295 | 109278 | 3.19 | 1.11e-217 | |||
105 | 5 | K4 | Medullary Stroma | all | Ppp1r14a | 68458 | 1931139 | 3.14 | 1.13e-199 | |||
105 | 5 | K4 | Medullary Stroma | all | Ldb2 | 16826 | 894670 | 3.12 | 1.42e-285 | |||
105 | 5 | K4 | Medullary Stroma | all | Emilin1 | 100952 | 1926189 | 3.12 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | Zeb2 | 24136 | 1344407 | 3.03 | 3.19e-307 | |||
105 | 5 | K4 | Medullary Stroma | all | Cnn2 | 12798 | 105093 | 3.03 | 0 | |||
105 | 5 | K4 | Medullary Stroma | all | S100a6 | 20200 | 1339467 | 2.98 | 2.45e-155 | |||
105 | 5 | K4 | Medullary Stroma | all | Pid1 | 98496 | 2138391 | 2.98 | 3.76e-196 | |||
105 | 5 | K4 | Medullary Stroma | all | Ifitm1 | 68713 | 1915963 | 2.96 | 1.01e-208 | |||
105 | 5 | K4 | Medullary Stroma | all | Tgfb1i1 | 21804 | 102784 | 2.96 | 2.22e-242 | |||
105 | 5 | K4 | Medullary Stroma | all | Pdlim2 | 213019 | 2384850 | 2.95 | 4.21e-301 | |||
105 | 5 | K4 | Medullary Stroma | all | Pcolce | 18542 | 105099 | 2.94 | 7.93e-234 |