Marker Genes
Dataset: Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk
- tissue: Kidney
- ontology: Kidney
- genotype: C57BL/6
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 31118232
- subset name: all
- total genes: 13116
- clustering: Seurat, edgeR
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108291
Rows:50
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | S100g | 12309 | 104528 | 6.45 | 7.4109846876187e-322 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Tmem52b | 330428 | 2442838 | 4.99 | 1.47585669238797e-312 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Tmem213 | 77522 | 1924772 | 4.75 | 1.06e-273 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Sostdc1 | 66042 | 1913292 | 4.64 | 4.45e-301 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Slc12a1 | 20495 | 103150 | 4.62 | 2.86e-122 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Wfdc2 | 67701 | 1914951 | 4.5 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Atp1b1 | 11931 | 88108 | 4.47 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Tfap2b | 21419 | 104672 | 4.41 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Mal | 17153 | 892970 | 4.22 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Epcam | 17075 | 106653 | 4.19 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Wfdc15b | 192201 | 2445041 | 4.16 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Ly6a | 110454 | 107527 | 3.91 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Aqp2 | 11827 | 1096865 | 3.69 | 1.13e-57 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Defb1 | 13214 | 1096878 | 3.61 | 2.66e-43 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Calb1 | 12307 | 88248 | 3.59 | 1.13e-90 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Tfcp2l1 | 81879 | 2444691 | 3.55 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Spp1 | 20750 | 98389 | 3.47 | 4.43e-78 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Cldn8 | 54420 | 1859286 | 3.42 | 7.37e-251 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Cldn7 | 53624 | 1859285 | 3.41 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Pantr1 | 66297 | 1913547 | 3.38 | 3.05e-304 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Irx1 | 16371 | 1197515 | 3.33 | 4.23e-116 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Cdh16 | 12556 | 106671 | 3.32 | 3.24e-267 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Cldn6 | 54419 | 1859284 | 3.29 | 2.02566914794911e-322 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Mecom | 14013 | 95457 | 3.29 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Umod | 22242 | 102674 | 3.26 | 1.15e-117 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Cdh1 | 12550 | 88354 | 3.21 | 2.91e-305 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Mt2 | 17750 | 97172 | 3.21 | 3.13e-107 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Chchd10 | 103172 | 2143558 | 3.17 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Cldn10 | 58187 | 1913101 | 3.16 | 5.19e-146 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Cldn19 | 242653 | 3033992 | 3.13 | 1.45e-228 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Pou3f3 | 18993 | 102564 | 3.13 | 1.51e-246 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Spint2 | 20733 | 1338031 | 3.1 | 0 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Aqp3 | 11828 | 1333777 | 3.04 | 3.2e-86 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Fxyd2 | 11936 | 1195260 | 3.03 | 3.23e-147 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Ppargc1a | 19017 | 1342774 | 3 | 1.33e-175 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Clcnkb | 56365 | 1930643 | 2.99 | 1.35e-115 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Emx1 | 13796 | 95387 | 2.95 | 3.32e-149 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Gata3 | 14462 | 95663 | 2.94 | 3.51e-161 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Tspan8 | 216350 | 2384918 | 2.93 | 3.47e-158 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Pgam2 | 56012 | 1933118 | 2.93 | 1.81e-67 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Paqr5 | 74090 | 1921340 | 2.92 | 8.84e-205 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Emx2 | 13797 | 95388 | 2.92 | 1.05e-199 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Mt1 | 17748 | 97171 | 2.81 | 4.22e-92 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Hoxd8 | 15437 | 96209 | 2.79 | 8.16e-189 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Tesc | 57816 | 1930803 | 2.79 | 3.56e-170 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Chst8 | 68947 | 1916197 | 2.78 | 1.38e-208 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Atp1a1 | 11928 | 88105 | 2.77 | 2.46e-251 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Crb3 | 224912 | 2670904 | 2.75 | 2.21e-252 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Fabp3 | 14077 | 95476 | 2.73 | 8.4e-130 | |||
105 | 4 | K3 | CnS-Distal Tubule-Loop of Henle | all | Sall3 | 20689 | 109295 | 2.72 | 6.4e-171 |