Marker Genes
Dataset: Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk
- tissue: Kidney
- ontology: Kidney
- genotype: C57BL/6
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 31118232
- subset name: all
- total genes: 13116
- clustering: Seurat, edgeR
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108291
Rows:50
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
105 | 3 | K2 | Cortical Stroma | all | Ren1 | 19701 | 97898 | 4.28 | 4.93e-63 | |||
105 | 3 | K2 | Cortical Stroma | all | Fibin | 67606 | 1914856 | 3.6 | 9.48e-305 | |||
105 | 3 | K2 | Cortical Stroma | all | Mgp | 17313 | 96976 | 3.6 | 1.31e-215 | |||
105 | 3 | K2 | Cortical Stroma | all | Hic1 | 15248 | 1338010 | 3.33 | 0 | |||
105 | 3 | K2 | Cortical Stroma | all | Igfbp5 | 16011 | 96440 | 3.27 | 3e-193 | |||
105 | 3 | K2 | Cortical Stroma | all | Rgs5 | 19737 | 1098434 | 3.15 | 9.15e-196 | |||
105 | 3 | K2 | Cortical Stroma | all | Fhl2 | 14200 | 1338762 | 3.11 | 9.58e-294 | |||
105 | 3 | K2 | Cortical Stroma | all | Lbhd2 | 380787 | 2685744 | 3 | 2.9e-176 | |||
105 | 3 | K2 | Cortical Stroma | all | Ntn1 | 18208 | 105088 | 2.97 | 5.22e-157 | |||
105 | 3 | K2 | Cortical Stroma | all | Lhfp | 108927 | 1920048 | 2.88 | 0 | |||
105 | 3 | K2 | Cortical Stroma | all | Ebf1 | 13591 | 95275 | 2.85 | 6.03e-198 | |||
105 | 3 | K2 | Cortical Stroma | all | Rspo3 | 72780 | 1920030 | 2.82 | 7.14e-101 | |||
105 | 3 | K2 | Cortical Stroma | all | Meis1 | 17268 | 104717 | 2.81 | 2.97e-276 | |||
105 | 3 | K2 | Cortical Stroma | all | Dlk1 | 13386 | 94900 | 2.8 | 2.54e-107 | |||
105 | 3 | K2 | Cortical Stroma | all | Ptn | 19242 | 97804 | 2.78 | 1.45e-218 | |||
105 | 3 | K2 | Cortical Stroma | all | Gdnf | 14573 | 107430 | 2.75 | 8.42e-144 | |||
105 | 3 | K2 | Cortical Stroma | all | Meg3 | 17263 | 1202886 | 2.68 | 1.43e-114 | |||
105 | 3 | K2 | Cortical Stroma | all | Serpine2 | 20720 | 101780 | 2.65 | 7.21e-168 | |||
105 | 3 | K2 | Cortical Stroma | all | Dkk1 | 13380 | 1329040 | 2.64 | 3.15e-48 | |||
105 | 3 | K2 | Cortical Stroma | all | Shisa3 | 330096 | 3041225 | 2.56 | 9.51e-133 | |||
105 | 3 | K2 | Cortical Stroma | all | Plagl1 | 22634 | 1100874 | 2.55 | 1.41e-151 | |||
105 | 3 | K2 | Cortical Stroma | all | Reln | 19699 | 103022 | 2.55 | 4.97e-111 | |||
105 | 3 | K2 | Cortical Stroma | all | Piezo2 | 667742 | 1918781 | 2.53 | 1.43e-146 | |||
105 | 3 | K2 | Cortical Stroma | all | Pdgfra | 18595 | 97530 | 2.52 | 3.62e-152 | |||
105 | 3 | K2 | Cortical Stroma | all | Cldn1 | 12737 | 1276109 | 2.5 | 2.29e-96 | |||
105 | 3 | K2 | Cortical Stroma | all | Col1a1 | 12842 | 88467 | 2.5 | 5.28e-121 | |||
105 | 3 | K2 | Cortical Stroma | all | Actr3b | 242894 | 2661120 | 2.49 | 4.64e-83 | |||
105 | 3 | K2 | Cortical Stroma | all | Ifitm1 | 68713 | 1915963 | 2.48 | 1.85e-133 | |||
105 | 3 | K2 | Cortical Stroma | all | Alcam | 11658 | 1313266 | 2.47 | 1.29e-151 | |||
105 | 3 | K2 | Cortical Stroma | all | Emilin1 | 100952 | 1926189 | 2.47 | 9.35e-193 | |||
105 | 3 | K2 | Cortical Stroma | all | Tnnt1 | 21955 | 1333868 | 2.43 | 1.57e-116 | |||
105 | 3 | K2 | Cortical Stroma | all | Mfap4 | 76293 | 1342276 | 2.42 | 6.15e-140 | |||
105 | 3 | K2 | Cortical Stroma | all | Col3a1 | 12825 | 88453 | 2.41 | 2.06e-130 | |||
105 | 3 | K2 | Cortical Stroma | all | Nfia | 18027 | 108056 | 2.41 | 9.46e-128 | |||
105 | 3 | K2 | Cortical Stroma | all | Penk | 18619 | 104629 | 2.4 | 3.09e-69 | |||
105 | 3 | K2 | Cortical Stroma | all | Ptgis | 19223 | 1097156 | 2.35 | 8.97e-113 | |||
105 | 3 | K2 | Cortical Stroma | all | Sertad4 | 214791 | 2443496 | 2.34 | 4.56e-110 | |||
105 | 3 | K2 | Cortical Stroma | all | Mecom | 14013 | 95457 | 2.34 | 2.08e-111 | |||
105 | 3 | K2 | Cortical Stroma | all | Ecm1 | 13601 | 103060 | 2.34 | 1.55e-98 | |||
105 | 3 | K2 | Cortical Stroma | all | Col4a4 | 12829 | 104687 | 2.29 | 9.57e-82 | |||
105 | 3 | K2 | Cortical Stroma | all | Islr | 26968 | 1349645 | 2.28 | 7.12e-122 | |||
105 | 3 | K2 | Cortical Stroma | all | Crabp2 | 12904 | 88491 | 2.27 | 7.7e-75 | |||
105 | 3 | K2 | Cortical Stroma | all | Col12a1 | 12816 | 88448 | 2.23 | 9.13e-85 | |||
105 | 3 | K2 | Cortical Stroma | all | Cfh | 12628 | 88385 | 2.21 | 3.9e-88 | |||
105 | 3 | K2 | Cortical Stroma | all | Loxl1 | 16949 | 106096 | 2.21 | 3.03e-104 | |||
105 | 3 | K2 | Cortical Stroma | all | Mfap2 | 17150 | 99559 | 2.21 | 8.53e-189 | |||
105 | 3 | K2 | Cortical Stroma | all | Pdlim2 | 213019 | 2384850 | 2.2 | 1.57e-128 | |||
105 | 3 | K2 | Cortical Stroma | all | Sfrp1 | 20377 | 892014 | 2.2 | 3.21e-87 | |||
105 | 3 | K2 | Cortical Stroma | all | Maged2 | 80884 | 1933391 | 2.19 | 2.13e-142 | |||
105 | 3 | K2 | Cortical Stroma | all | Mest | 17294 | 96968 | 2.19 | 2.67e-124 |