Marker Genes
Dataset: Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk
- tissue: Kidney
- ontology: Kidney
- genotype: C57BL/6
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 31118232
- subset name: all
- total genes: 13116
- clustering: Seurat, edgeR
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108291
Rows:50
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
105 | 2 | K1 | Collecting duct-associated stroma | all | Penk | 18619 | 104629 | 4.88 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Nts | 67405 | 1328351 | 4.77 | 1.5e-123 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Acta2 | 11475 | 87909 | 4.28 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Cldn11 | 18417 | 106925 | 3.94 | 1.13e-233 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Tagln | 21345 | 106012 | 3.89 | 1.27e-148 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Alx1 | 216285 | 104621 | 3.88 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Cfh | 12628 | 88385 | 3.75 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Col15a1 | 12819 | 88449 | 3.58 | 1.32e-286 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Col3a1 | 12825 | 88453 | 3.52 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Thy1 | 21838 | 98747 | 3.45 | 1.14e-270 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Myl9 | 98932 | 2138915 | 3.44 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Tcf21 | 21412 | 1202715 | 3.41 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Gucy1a1 | 60596 | 1926562 | 3.4 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Cxcl14 | 57266 | 1888514 | 3.37 | 8.21e-151 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Sfrp1 | 20377 | 892014 | 3.28 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Col1a1 | 12842 | 88467 | 3.19 | 1.96e-276 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Col1a2 | 12843 | 88468 | 3.17 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Olfml3 | 99543 | 1914877 | 3.16 | 1.1e-300 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Nrxn3 | 18191 | 1096389 | 3.1 | 1.12e-120 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Bgn | 12111 | 88158 | 3.1 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Lgals1 | 16852 | 96777 | 3.06 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Lhfp | 108927 | 1920048 | 3.05 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Cdkn1c | 12577 | 104564 | 3.04 | 1.12e-275 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Lbh | 77889 | 1925139 | 2.94 | 2.37e-294 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Pfn2 | 18645 | 97550 | 2.9 | 2.09e-245 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Meg3 | 17263 | 1202886 | 2.86 | 4.21e-150 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Serpine2 | 20720 | 101780 | 2.84 | 6.58e-232 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Mylk | 107589 | 894806 | 2.83 | 8.07e-269 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Lrriq1 | 74978 | 1922228 | 2.82 | 2.32e-189 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Cnn2 | 12798 | 105093 | 2.81 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Sdc2 | 15529 | 1349165 | 2.79 | 5.37e-261 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Gas6 | 14456 | 95660 | 2.79 | 3.83e-135 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Nav3 | 260315 | 2183703 | 2.76 | 8.31e-181 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Rarres2 | 71660 | 1918910 | 2.76 | 2.22e-229 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Tmsb4x | 19241 | 99510 | 2.75 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Csrp1 | 13007 | 88549 | 2.75 | 0 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Zeb2 | 24136 | 1344407 | 2.73 | 7.33e-277 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Pla2g4a | 18783 | 1195256 | 2.73 | 2.24e-178 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Nexn | 68810 | 1916060 | 2.72 | 2.84e-153 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Palld | 72333 | 1919583 | 2.69 | 1.93e-154 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Dclk1 | 13175 | 1330861 | 2.67 | 2.09e-160 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Sema3a | 20346 | 107558 | 2.66 | 1.95e-192 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Snai2 | 20583 | 1096393 | 2.64 | 5.31e-169 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Pdgfra | 18595 | 97530 | 2.64 | 6.29e-195 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Emilin1 | 100952 | 1926189 | 2.62 | 2.24e-262 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Nkd1 | 93960 | 2135954 | 2.58 | 1.19e-162 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Dcn | 13179 | 94872 | 2.58 | 8.41e-82 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Col6a1 | 12833 | 88459 | 2.56 | 4.75e-168 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Fbln5 | 23876 | 1346091 | 2.53 | 1.25e-159 | |||
105 | 2 | K1 | Collecting duct-associated stroma | all | Plac8 | 231507 | 2445289 | 2.52 | 5.73e-108 |