Marker Genes
Dataset: Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk
- tissue: Kidney
- ontology: Kidney
- genotype: C57BL/6
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 31118232
- subset name: all
- total genes: 13116
- clustering: Seurat, edgeR
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108291
Rows:50
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
105 | 11 | K10 | Immune cells | all | Lyz2 | 17105 | 96897 | 8.16 | 0 | |||
105 | 11 | K10 | Immune cells | all | C1qc | 12262 | 88225 | 7.77 | 0 | |||
105 | 11 | K10 | Immune cells | all | C1qb | 12260 | 88224 | 7.76 | 0 | |||
105 | 11 | K10 | Immune cells | all | C1qa | 12259 | 88223 | 7.63 | 0 | |||
105 | 11 | K10 | Immune cells | all | Pf4 | 56744 | 1888711 | 7.56 | 0 | |||
105 | 11 | K10 | Immune cells | all | S100a8 | 20201 | 88244 | 7.48 | 2.33e-145 | |||
105 | 11 | K10 | Immune cells | all | Fcer1g | 14127 | 95496 | 7.47 | 0 | |||
105 | 11 | K10 | Immune cells | all | Tyrobp | 22177 | 1277211 | 7.4 | 0 | |||
105 | 11 | K10 | Immune cells | all | Apoe | 11816 | 88057 | 7.18 | 0 | |||
105 | 11 | K10 | Immune cells | all | Ctss | 13040 | 107341 | 7.01 | 0 | |||
105 | 11 | K10 | Immune cells | all | S100a9 | 20202 | 1338947 | 6.81 | 3.02e-119 | |||
105 | 11 | K10 | Immune cells | all | Cd52 | 23833 | 1346088 | 6.67 | 0 | |||
105 | 11 | K10 | Immune cells | all | Ms4a6c | 73656 | 2385644 | 6.58 | 0 | |||
105 | 11 | K10 | Immune cells | all | Ccl4 | 20303 | 98261 | 6.27 | 3.38e-253 | |||
105 | 11 | K10 | Immune cells | all | Fcgr3 | 14131 | 95500 | 6.25 | 0 | |||
105 | 11 | K10 | Immune cells | all | Ccl12 | 20293 | 108224 | 6.17 | 0 | |||
105 | 11 | K10 | Immune cells | all | Ccl3 | 20302 | 98260 | 6.08 | 0 | |||
105 | 11 | K10 | Immune cells | all | Coro1a | 12721 | 1345961 | 6.07 | 0 | |||
105 | 11 | K10 | Immune cells | all | Aif1 | 11629 | 1343098 | 6.05 | 0 | |||
105 | 11 | K10 | Immune cells | all | Lst1 | 16988 | 1096324 | 6.04 | 0 | |||
105 | 11 | K10 | Immune cells | all | Stfa1 | 20861 | 106198 | 5.99 | 3.28e-62 | |||
105 | 11 | K10 | Immune cells | all | Laptm5 | 16792 | 108046 | 5.95 | 0 | |||
105 | 11 | K10 | Immune cells | all | Csf1r | 12978 | 1339758 | 5.93 | 0 | |||
105 | 11 | K10 | Immune cells | all | Ctsc | 13032 | 109553 | 5.93 | 0 | |||
105 | 11 | K10 | Immune cells | all | Cstdc5 | 100034684 | 3696883 | 5.89 | 1.56e-39 | |||
105 | 11 | K10 | Immune cells | all | Ly86 | 17084 | 1321404 | 5.85 | 0 | |||
105 | 11 | K10 | Immune cells | all | Ms4a6b | 69774 | 1917024 | 5.83 | 0 | |||
105 | 11 | K10 | Immune cells | all | Cd74 | 16149 | 96534 | 5.8 | 3.78e-171 | |||
105 | 11 | K10 | Immune cells | all | Cx3cr1 | 13051 | 1333815 | 5.78 | 0 | |||
105 | 11 | K10 | Immune cells | all | Ms4a7 | 109225 | 1918846 | 5.76 | 0 | |||
105 | 11 | K10 | Immune cells | all | Mrc1 | 17533 | 97142 | 5.72 | 0 | |||
105 | 11 | K10 | Immune cells | all | F13a1 | 74145 | 1921395 | 5.68 | 0 | |||
105 | 11 | K10 | Immune cells | all | Rac2 | 19354 | 97846 | 5.67 | 0 | |||
105 | 11 | K10 | Immune cells | all | Fcrls | 80891 | 1933397 | 5.66 | 0 | |||
105 | 11 | K10 | Immune cells | all | Spi1 | 20375 | 98282 | 5.59 | 0 | |||
105 | 11 | K10 | Immune cells | all | Trf | 22041 | 98821 | 5.55 | 0 | |||
105 | 11 | K10 | Immune cells | all | Pld4 | 104759 | 2144765 | 5.47 | 0 | |||
105 | 11 | K10 | Immune cells | all | Cd68 | 12514 | 88342 | 5.46 | 0 | |||
105 | 11 | K10 | Immune cells | all | Cstdc4 | 433016 | 3645124 | 5.42 | 3.16e-39 | |||
105 | 11 | K10 | Immune cells | all | Fcgr1 | 14129 | 95498 | 5.33 | 0 | |||
105 | 11 | K10 | Immune cells | all | Clec4a2 | 26888 | 1349412 | 5.28 | 0 | |||
105 | 11 | K10 | Immune cells | all | Ccl9 | 20308 | 104533 | 5.26 | 0 | |||
105 | 11 | K10 | Immune cells | all | Cybb | 13058 | 88574 | 5.22 | 0 | |||
105 | 11 | K10 | Immune cells | all | Alox5ap | 11690 | 107505 | 5.2 | 0 | |||
105 | 11 | K10 | Immune cells | all | H2-D1 | 14964 | 95896 | 5.2 | 0 | |||
105 | 11 | K10 | Immune cells | all | Lcp1 | 18826 | 104808 | 5.17 | 0 | |||
105 | 11 | K10 | Immune cells | all | Ifi27l2a | 76933 | 1924183 | 5.16 | 2.77e-187 | |||
105 | 11 | K10 | Immune cells | all | Unc93b1 | 54445 | 1859307 | 5.16 | 0 | |||
105 | 11 | K10 | Immune cells | all | Ccl2 | 20296 | 98259 | 5.1 | 1.12350527864299e-320 | |||
105 | 11 | K10 | Immune cells | all | Slfn2 | 20556 | 1313258 | 5.08 | 0 |