Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:132
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 41 Opc2 Oligodendrocyte progenitor cells all GADD45B 4616 4096 5.8 1.74e-121
104 41 Opc2 Oligodendrocyte progenitor cells all ARID5A 10865 17361 3.92 3.7e-40
104 41 Opc2 Oligodendrocyte progenitor cells all TPST1 8460 12020 2.79 4.04e-39
104 41 Opc2 Oligodendrocyte progenitor cells all FOS 2353 3796 3.38 8.75e-33
104 41 Opc2 Oligodendrocyte progenitor cells all ARHGEF3 50650 683 2.79 4.7e-27
104 41 Opc2 Oligodendrocyte progenitor cells all NPTX2 4885 7953 3.93 1.31e-25
104 41 Opc2 Oligodendrocyte progenitor cells all FAM20C 56975 22140 2.67 4.34e-21
104 41 Opc2 Oligodendrocyte progenitor cells all SLC24A2 25769 10976 1.97 3.89e-20
104 41 Opc2 Oligodendrocyte progenitor cells all TCAF2 285966 26878 3.12 2.03e-19
104 41 Opc2 Oligodendrocyte progenitor cells all KCNMB4 27345 6289 2.92 2.15e-18
104 41 Opc2 Oligodendrocyte progenitor cells all GLIS3 169792 28510 2.89 3.43e-18
104 41 Opc2 Oligodendrocyte progenitor cells all RAB3IP 117177 16508 2.18 1.07e-17
104 41 Opc2 Oligodendrocyte progenitor cells all OSMR 9180 8507 3.01 3.82e-17
104 41 Opc2 Oligodendrocyte progenitor cells all SNED1 25992 24696 3.54 1.04e-16
104 41 Opc2 Oligodendrocyte progenitor cells all UBASH3B 84959 29884 2.11 4.47e-16
104 41 Opc2 Oligodendrocyte progenitor cells all SPRED3 399473 31041 2.96 4.98e-16
104 41 Opc2 Oligodendrocyte progenitor cells all BCL6 604 1001 2.27 2.09e-15
104 41 Opc2 Oligodendrocyte progenitor cells all MARCHF3 115123 28728 2.97 2.27e-15
104 41 Opc2 Oligodendrocyte progenitor cells all PMP2 5375 9117 2.28 5.15e-14
104 41 Opc2 Oligodendrocyte progenitor cells all CAMK2D 817 1462 2.06 9.61e-14
104 41 Opc2 Oligodendrocyte progenitor cells all RETREG1 54463 25964 2.44 1.34e-13
104 41 Opc2 Oligodendrocyte progenitor cells all TIMP3 7078 11822 2.44 5.05e-13
104 41 Opc2 Oligodendrocyte progenitor cells all ST6GAL1 6480 10860 1.76 1.42e-12
104 41 Opc2 Oligodendrocyte progenitor cells all NCOA1 8648 7668 1.16 2.46e-12
104 41 Opc2 Oligodendrocyte progenitor cells all ELL2 22936 17064 2.93 9.22e-12
104 41 Opc2 Oligodendrocyte progenitor cells all SORBS1 10580 14565 1.93 4.85e-11
104 41 Opc2 Oligodendrocyte progenitor cells all TIAM1 7074 11805 1.53 5.66e-11
104 41 Opc2 Oligodendrocyte progenitor cells all JUN 3725 6204 2.17 1.18e-10
104 41 Opc2 Oligodendrocyte progenitor cells all SAMD4A 23034 23023 1.33 3.95e-10
104 41 Opc2 Oligodendrocyte progenitor cells all BAALC 79870 14333 1.55 4.15e-10
104 41 Opc2 Oligodendrocyte progenitor cells all FABP5 2171 3560 2.3 5.02e-10
104 41 Opc2 Oligodendrocyte progenitor cells all MATN2 4147 6908 1.79 9.41e-10
104 41 Opc2 Oligodendrocyte progenitor cells all ATP1B2 482 805 1.47 9.41e-10
104 41 Opc2 Oligodendrocyte progenitor cells all TANC1 85461 29364 1.5 2.15e-09
104 41 Opc2 Oligodendrocyte progenitor cells all KCNH1 3756 6250 3.22 2.79e-09
104 41 Opc2 Oligodendrocyte progenitor cells all ADAMTS9 56999 13202 2.51 2.95e-09
104 41 Opc2 Oligodendrocyte progenitor cells all BEST3 144453 17105 1.93 1.45e-08
104 41 Opc2 Oligodendrocyte progenitor cells all PDE8B 8622 8794 1.34 2.13e-08
104 41 Opc2 Oligodendrocyte progenitor cells all ALDH1L1 10840 3978 2.03 2.81e-08
104 41 Opc2 Oligodendrocyte progenitor cells all UHRF2 115426 12557 2.15 3.99e-08
104 41 Opc2 Oligodendrocyte progenitor cells all IL1RAP 3556 5995 1.5 5.48e-08
104 41 Opc2 Oligodendrocyte progenitor cells all PLPP4 196051 23531 1.34 1.01e-07
104 41 Opc2 Oligodendrocyte progenitor cells all SGCD 6444 10807 1.11 1.7e-07
104 41 Opc2 Oligodendrocyte progenitor cells all CLIC4 25932 13518 1.68 2.12e-07
104 41 Opc2 Oligodendrocyte progenitor cells all RFX4 5992 9985 1.8 3.2e-07
104 41 Opc2 Oligodendrocyte progenitor cells all BCAT1 586 976 1.42 3.94e-07
104 41 Opc2 Oligodendrocyte progenitor cells all HSPB1 3315 5246 2.33 5.53e-07
104 41 Opc2 Oligodendrocyte progenitor cells all GLDC 2731 4313 1.96 5.69e-07
104 41 Opc2 Oligodendrocyte progenitor cells all CSMD2 114784 19290 0.94 1.39e-06
104 41 Opc2 Oligodendrocyte progenitor cells all HAP1 9001 4812 1.9 1.78e-06
104 41 Opc2 Oligodendrocyte progenitor cells all NPAS2 4862 7895 1.53 2.03e-06
104 41 Opc2 Oligodendrocyte progenitor cells all TNIK 23043 30765 1.13 3.52e-06
104 41 Opc2 Oligodendrocyte progenitor cells all PMP22 5376 9118 1.61 4.65e-06
104 41 Opc2 Oligodendrocyte progenitor cells all ACTN2 88 164 2.05 4.78e-06
104 41 Opc2 Oligodendrocyte progenitor cells all DLG5 9231 2904 1.82 5.76e-06
104 41 Opc2 Oligodendrocyte progenitor cells all BRD4 23476 13575 1.57 5.82e-06
104 41 Opc2 Oligodendrocyte progenitor cells all MYO9B 4650 7609 1.47 3.69e-05
104 41 Opc2 Oligodendrocyte progenitor cells all STAT1 6772 11362 2.15 5.46e-05
104 41 Opc2 Oligodendrocyte progenitor cells all SHISA9 729993 37231 1.04 6.52e-05
104 41 Opc2 Oligodendrocyte progenitor cells all FOXJ3 22887 29178 1.11 7.57e-05
104 41 Opc2 Oligodendrocyte progenitor cells all SH3RF3 344558 24699 1.61 8.28e-05
104 41 Opc2 Oligodendrocyte progenitor cells all PCGF5 84333 28264 1.17 8.73e-05
104 41 Opc2 Oligodendrocyte progenitor cells all DPYSL3 1809 3015 0.99 9.81e-05
104 41 Opc2 Oligodendrocyte progenitor cells all MED13L 23389 22962 0.88 0.000129104371892
104 41 Opc2 Oligodendrocyte progenitor cells all LARP4 113251 24320 1.67 0.000157719656404
104 41 Opc2 Oligodendrocyte progenitor cells all AHI1 54806 21575 0.73 0.000173099191112
104 41 Opc2 Oligodendrocyte progenitor cells all SEC24D 9871 10706 1.37 0.000176004475434
104 41 Opc2 Oligodendrocyte progenitor cells all FRMD5 84978 28214 1.27 0.000197593994834
104 41 Opc2 Oligodendrocyte progenitor cells all ATP11A 23250 13552 1.67 0.000214652142923
104 41 Opc2 Oligodendrocyte progenitor cells all APP 351 620 0.87 0.000231838637506
104 41 Opc2 Oligodendrocyte progenitor cells all DOCK7 85440 19190 1.51 0.000320417679155
104 41 Opc2 Oligodendrocyte progenitor cells all ZFYVE28 57732 29334 1.82 0.000325228108452
104 41 Opc2 Oligodendrocyte progenitor cells all EEA1 8411 3185 1.18 0.00036202763387
104 41 Opc2 Oligodendrocyte progenitor cells all PLAT 5327 9051 1.77 0.000450633514741
104 41 Opc2 Oligodendrocyte progenitor cells all GNG4 2786 4407 1.39 0.000452664984784
104 41 Opc2 Oligodendrocyte progenitor cells all DIP2C 22982 29150 0.69 0.000469738697951
104 41 Opc2 Oligodendrocyte progenitor cells all GALR1 2587 4132 1.61 0.000570004183552
104 41 Opc2 Oligodendrocyte progenitor cells all H3F3B 3021 4765 1.08 0.000597692469861
104 41 Opc2 Oligodendrocyte progenitor cells all SAMD8 142891 26320 1.95 0.000625776832456
104 41 Opc2 Oligodendrocyte progenitor cells all GNA12 2768 4380 1.19 0.000639421139564
104 41 Opc2 Oligodendrocyte progenitor cells all INPP5F 22876 17054 1.23 0.000725735159522
104 41 Opc2 Oligodendrocyte progenitor cells all NAV2 89797 15997 0.6 0.000804396390438
104 41 Opc2 Oligodendrocyte progenitor cells all ZDHHC14 79683 20341 0.71 0.000839403151673
104 41 Opc2 Oligodendrocyte progenitor cells all C1QL1 10882 24182 1.04 0.000839403151673
104 41 Opc2 Oligodendrocyte progenitor cells all WWP1 11059 17004 1.42 0.00086087354882
104 41 Opc2 Oligodendrocyte progenitor cells all SLC6A11 6538 11044 1.62 0.000941624346708
104 41 Opc2 Oligodendrocyte progenitor cells all PCSK6 5046 8569 1.81 0.000943060390509
104 41 Opc2 Oligodendrocyte progenitor cells all TIAM2 26230 11806 1.08 0.001082207034064
104 41 Opc2 Oligodendrocyte progenitor cells all RAB8B 51762 30273 1.33 0.001161460195793
104 41 Opc2 Oligodendrocyte progenitor cells all TRIO 7204 12303 0.71 0.001195352459003
104 41 Opc2 Oligodendrocyte progenitor cells all HIVEP2 3097 4921 1.25 0.001303415386281
104 41 Opc2 Oligodendrocyte progenitor cells all ASIC2 40 99 1.01 0.001390315519602
104 41 Opc2 Oligodendrocyte progenitor cells all ETV6 2120 3495 1.26 0.001800436102766
104 41 Opc2 Oligodendrocyte progenitor cells all FAR2 55711 25531 1.16 0.001931275558613
104 41 Opc2 Oligodendrocyte progenitor cells all SPRED1 161742 20249 1.2 0.002038611527431
104 41 Opc2 Oligodendrocyte progenitor cells all HNRNPR 10236 5047 1.15 0.002041197434151
104 41 Opc2 Oligodendrocyte progenitor cells all LYST 1130 1968 0.93 0.002041197434151
104 41 Opc2 Oligodendrocyte progenitor cells all DHX36 170506 14410 1.09 0.002049325137174
104 41 Opc2 Oligodendrocyte progenitor cells all CLIP1 6249 10461 1.38 0.002175120968315
104 41 Opc2 Oligodendrocyte progenitor cells all TMED10 10972 16998 0.9 0.002187851865221
104 41 Opc2 Oligodendrocyte progenitor cells all PPP2CB 5516 9300 2.01 0.002555447374483
104 41 Opc2 Oligodendrocyte progenitor cells all ANKRD10 55608 20265 0.96 0.002697029908866
104 41 Opc2 Oligodendrocyte progenitor cells all STAT3 6774 11364 0.98 0.002740238375156
104 41 Opc2 Oligodendrocyte progenitor cells all STK3 6788 11406 1.23 0.003025174040028
104 41 Opc2 Oligodendrocyte progenitor cells all GAB2 9846 14458 0.8 0.003314431612888
104 41 Opc2 Oligodendrocyte progenitor cells all GRIK3 2899 4581 0.89 0.003596696928842
104 41 Opc2 Oligodendrocyte progenitor cells all TRIM24 8805 11812 0.93 0.003972518404263
104 41 Opc2 Oligodendrocyte progenitor cells all ENOX1 55068 25474 1.07 0.004148038425396
104 41 Opc2 Oligodendrocyte progenitor cells all PITPNC1 26207 21045 0.96 0.004148038425396
104 41 Opc2 Oligodendrocyte progenitor cells all DDB1 1642 2717 1.13 0.004165707707075
104 41 Opc2 Oligodendrocyte progenitor cells all APBA2 321 579 1.02 0.004264088810249
104 41 Opc2 Oligodendrocyte progenitor cells all WDR11 55717 13831 1.22 0.004300093047015
104 41 Opc2 Oligodendrocyte progenitor cells all EHBP1 23301 29144 0.8 0.004408643844858
104 41 Opc2 Oligodendrocyte progenitor cells all MARK3 4140 6897 1.51 0.004408643844858
104 41 Opc2 Oligodendrocyte progenitor cells all KALRN 8997 4814 1.06 0.004685819943158
104 41 Opc2 Oligodendrocyte progenitor cells all RALGDS 5900 9842 1.21 0.004685819943158
104 41 Opc2 Oligodendrocyte progenitor cells all SPECC1 92521 30615 1.59 0.005412162593413
104 41 Opc2 Oligodendrocyte progenitor cells all STK32B 55351 14217 1.05 0.005561513713726
104 41 Opc2 Oligodendrocyte progenitor cells all RAB28 9364 9768 1.06 0.005561513713726
104 41 Opc2 Oligodendrocyte progenitor cells all SAT2 112483 23160 1.4 0.005813869024974
104 41 Opc2 Oligodendrocyte progenitor cells all ABHD2 11057 18717 0.59 0.005826081003855
104 41 Opc2 Oligodendrocyte progenitor cells all PTPN13 5783 9646 1.58 0.006604522289493
104 41 Opc2 Oligodendrocyte progenitor cells all KCNIP1 30820 15521 0.72 0.006734691752093
104 41 Opc2 Oligodendrocyte progenitor cells all AFTPH 54812 25951 1.15 0.006743211042938
104 41 Opc2 Oligodendrocyte progenitor cells all NOS1 4842 7872 1.08 0.006889303511599
104 41 Opc2 Oligodendrocyte progenitor cells all NRXN3 9369 8010 1.16 0.007350012224147
104 41 Opc2 Oligodendrocyte progenitor cells all ABCC8 6833 59 1.01 0.007389727726794
104 41 Opc2 Oligodendrocyte progenitor cells all PDE8A 5151 8793 1.1 0.007389727726794
104 41 Opc2 Oligodendrocyte progenitor cells all FLOT1 10211 3757 1.02 0.007533126900662
104 41 Opc2 Oligodendrocyte progenitor cells all LPIN1 23175 13345 1.02 0.007707114648188
104 41 Opc2 Oligodendrocyte progenitor cells all RASD1 51655 15828 1.38 0.009518846635556
104 41 Opc2 Oligodendrocyte progenitor cells all MAP1B 4131 6836 0.94 0.009653511794262