Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:83
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 40 Opc1 Oligodendrocyte progenitor cells all APOD 347 612 1.2 2.02e-85
104 40 Opc1 Oligodendrocyte progenitor cells all GAPDH 2597 4141 1.29 9.73e-60
104 40 Opc1 Oligodendrocyte progenitor cells all CST3 1471 2475 1.2 2.18e-55
104 40 Opc1 Oligodendrocyte progenitor cells all FTH1 2495 3976 1.06 1.72e-41
104 40 Opc1 Oligodendrocyte progenitor cells all MARCKSL1 65108 7142 1.08 8.4e-35
104 40 Opc1 Oligodendrocyte progenitor cells all BCAN 63827 23059 0.8 3.32e-30
104 40 Opc1 Oligodendrocyte progenitor cells all ACTG1 71 144 1.12 1.89e-27
104 40 Opc1 Oligodendrocyte progenitor cells all UBC 7316 12468 1.4 4.99e-24
104 40 Opc1 Oligodendrocyte progenitor cells all MT3 4504 7408 1.01 6.73e-24
104 40 Opc1 Oligodendrocyte progenitor cells all RPL13 6137 10303 0.85 4.16e-23
104 40 Opc1 Oligodendrocyte progenitor cells all SCRG1 11341 17036 0.88 4.26e-23
104 40 Opc1 Oligodendrocyte progenitor cells all ITM2C 81618 6175 0.91 6.16e-23
104 40 Opc1 Oligodendrocyte progenitor cells all MT2A 4502 7406 1.09 7.62e-23
104 40 Opc1 Oligodendrocyte progenitor cells all ACTB 60 132 0.88 4.58e-22
104 40 Opc1 Oligodendrocyte progenitor cells all S100B 6285 10500 1.09 2.16e-21
104 40 Opc1 Oligodendrocyte progenitor cells all TUBA1A 7846 20766 1.18 5.54e-21
104 40 Opc1 Oligodendrocyte progenitor cells all SRP14 6727 11299 1.36 3.19e-19
104 40 Opc1 Oligodendrocyte progenitor cells all UBB 7314 12463 1.18 3.36e-19
104 40 Opc1 Oligodendrocyte progenitor cells all FTL 2512 3999 0.84 4.87e-19
104 40 Opc1 Oligodendrocyte progenitor cells all CKB 1152 1991 0.84 8.73e-19
104 40 Opc1 Oligodendrocyte progenitor cells all CNP 1267 2158 0.99 8.73e-19
104 40 Opc1 Oligodendrocyte progenitor cells all GPNMB 10457 4462 0.79 1.89e-18
104 40 Opc1 Oligodendrocyte progenitor cells all TUBB2B 347733 30829 1.42 2.78e-18
104 40 Opc1 Oligodendrocyte progenitor cells all NDUFA4 4697 7687 1.27 7.96e-18
104 40 Opc1 Oligodendrocyte progenitor cells all B2M 567 914 0.95 4.77e-17
104 40 Opc1 Oligodendrocyte progenitor cells all DBI 1622 2690 1.09 7.62e-17
104 40 Opc1 Oligodendrocyte progenitor cells all CFL1 1072 1874 1.26 9.29e-17
104 40 Opc1 Oligodendrocyte progenitor cells all BEX3 27018 13388 1.07 2.36e-16
104 40 Opc1 Oligodendrocyte progenitor cells all PCSK1N 27344 17301 0.91 2.51e-16
104 40 Opc1 Oligodendrocyte progenitor cells all LY6H 4062 6728 1 3.18e-16
104 40 Opc1 Oligodendrocyte progenitor cells all DYNLL1 8655 15476 1.2 3.23e-16
104 40 Opc1 Oligodendrocyte progenitor cells all ENO1 2023 3350 1.03 6.05e-16
104 40 Opc1 Oligodendrocyte progenitor cells all HSP90AA1 3320 5253 0.7 8.36e-16
104 40 Opc1 Oligodendrocyte progenitor cells all TSPAN7 7102 11854 0.91 1.06e-15
104 40 Opc1 Oligodendrocyte progenitor cells all RAMP1 10267 9843 0.76 1.06e-14
104 40 Opc1 Oligodendrocyte progenitor cells all CLU 1191 2095 0.83 6.36e-14
104 40 Opc1 Oligodendrocyte progenitor cells all RGCC 28984 20369 0.82 1.04e-13
104 40 Opc1 Oligodendrocyte progenitor cells all SELENOW 6415 10752 1.09 1.49e-13
104 40 Opc1 Oligodendrocyte progenitor cells all HLA-A 3105 4931 0.99 2.61e-13
104 40 Opc1 Oligodendrocyte progenitor cells all ITM2B 9445 6174 0.76 2.63e-13
104 40 Opc1 Oligodendrocyte progenitor cells all EEF1A1 1915 3189 1.01 4.51e-13
104 40 Opc1 Oligodendrocyte progenitor cells all EIF1 10209 3249 0.95 5.88e-13
104 40 Opc1 Oligodendrocyte progenitor cells all HSP90AB1 3326 5258 0.91 6.71e-13
104 40 Opc1 Oligodendrocyte progenitor cells all PTGDS 5730 9592 0.85 6.71e-13
104 40 Opc1 Oligodendrocyte progenitor cells all SKP1 6500 10899 1.08 3.23e-12
104 40 Opc1 Oligodendrocyte progenitor cells all SPARCL1 8404 11220 0.54 3.58e-12
104 40 Opc1 Oligodendrocyte progenitor cells all LDHB 3945 6541 1.01 4.15e-12
104 40 Opc1 Oligodendrocyte progenitor cells all PTMA 5757 9623 0.91 1.24e-11
104 40 Opc1 Oligodendrocyte progenitor cells all NKAIN4 128414 16191 0.9 2.28e-11
104 40 Opc1 Oligodendrocyte progenitor cells all SLC22A17 51310 23095 0.68 2.74e-11
104 40 Opc1 Oligodendrocyte progenitor cells all PTN 5764 9630 0.52 3.38e-11
104 40 Opc1 Oligodendrocyte progenitor cells all RPS2 6187 10404 1.02 3.54e-11
104 40 Opc1 Oligodendrocyte progenitor cells all PLLP 51090 18553 0.54 9.02e-11
104 40 Opc1 Oligodendrocyte progenitor cells all TSC22D4 81628 21696 0.67 9.37e-11
104 40 Opc1 Oligodendrocyte progenitor cells all RPS15 6209 10388 0.93 1.09e-10
104 40 Opc1 Oligodendrocyte progenitor cells all ALDOA 226 414 1.09 2.61e-10
104 40 Opc1 Oligodendrocyte progenitor cells all PGRMC1 10857 16090 0.81 4.41e-10
104 40 Opc1 Oligodendrocyte progenitor cells all PEBP1 5037 8630 0.7 1.77e-09
104 40 Opc1 Oligodendrocyte progenitor cells all H3F3B 3021 4765 0.66 2.91e-09
104 40 Opc1 Oligodendrocyte progenitor cells all APOO 79135 28727 0.8 1.94e-08
104 40 Opc1 Oligodendrocyte progenitor cells all MARCKS 4082 6759 0.62 3.59e-08
104 40 Opc1 Oligodendrocyte progenitor cells all RPL15 6138 10306 0.92 5.76e-08
104 40 Opc1 Oligodendrocyte progenitor cells all NEU4 129807 21328 0.7 8.62e-08
104 40 Opc1 Oligodendrocyte progenitor cells all EMC10 284361 27609 0.85 8.62e-08
104 40 Opc1 Oligodendrocyte progenitor cells all TTYH1 57348 13476 0.62 1.1e-07
104 40 Opc1 Oligodendrocyte progenitor cells all HLA-C 3107 4933 0.79 1.3e-07
104 40 Opc1 Oligodendrocyte progenitor cells all ASCL1 429 738 0.56 2.77e-07
104 40 Opc1 Oligodendrocyte progenitor cells all SARAF 51669 28789 0.68 2.96e-07
104 40 Opc1 Oligodendrocyte progenitor cells all RPS19 6223 10402 0.8 5.27e-07
104 40 Opc1 Oligodendrocyte progenitor cells all RPL13A 23521 10304 0.67 5.71e-07
104 40 Opc1 Oligodendrocyte progenitor cells all UCHL1 7345 12513 0.63 1.97e-06
104 40 Opc1 Oligodendrocyte progenitor cells all RPL18 6141 10310 0.82 3.36e-06
104 40 Opc1 Oligodendrocyte progenitor cells all CD81 975 1701 0.55 3.48e-06
104 40 Opc1 Oligodendrocyte progenitor cells all RPL10 6134 10298 0.7 3.71e-06
104 40 Opc1 Oligodendrocyte progenitor cells all GPC5 2262 4453 0.51 5.93e-06
104 40 Opc1 Oligodendrocyte progenitor cells all SERPINE2 5270 8951 0.55 1.12e-05
104 40 Opc1 Oligodendrocyte progenitor cells all PKM 5315 9021 0.59 4.62e-05
104 40 Opc1 Oligodendrocyte progenitor cells all SCG3 29106 13707 0.64 4.7e-05
104 40 Opc1 Oligodendrocyte progenitor cells all TRAF4 9618 12034 0.51 8.27e-05
104 40 Opc1 Oligodendrocyte progenitor cells all ATP6V0E2 155066 21723 0.65 0.000128218729674
104 40 Opc1 Oligodendrocyte progenitor cells all EID1 23741 1191 0.53 0.000227053265979
104 40 Opc1 Oligodendrocyte progenitor cells all THY1 7070 11801 0.58 0.00095807911128
104 40 Opc1 Oligodendrocyte progenitor cells all TMEM59 9528 1239 0.54 0.001516618164123