Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:232
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 4 Ast3 Astrocytes all ARHGEF3 50650 683 2.82 5.25e-79
104 4 Ast3 Astrocytes all TPST1 8460 12020 2.53 2.63e-68
104 4 Ast3 Astrocytes all HILPDA 29923 28859 3.06 6.78e-68
104 4 Ast3 Astrocytes all GADD45B 4616 4096 3 1.82e-58
104 4 Ast3 Astrocytes all CHI3L1 1116 1932 2.85 1.44e-46
104 4 Ast3 Astrocytes all CD44 960 1681 2.13 5.29e-40
104 4 Ast3 Astrocytes all ELL2 22936 17064 2.63 1.97e-38
104 4 Ast3 Astrocytes all PLSCR1 5359 9092 2.81 4.62e-36
104 4 Ast3 Astrocytes all YTHDF1 54915 15867 2.72 9.32e-36
104 4 Ast3 Astrocytes all ZFYVE28 57732 29334 2.36 1.32e-32
104 4 Ast3 Astrocytes all FAM20C 56975 22140 2.32 8.6e-32
104 4 Ast3 Astrocytes all OSMR 9180 8507 1.95 1.06e-31
104 4 Ast3 Astrocytes all GNA14 9630 4382 1.67 1.39e-30
104 4 Ast3 Astrocytes all SAMD4A 23034 23023 1.57 1.12e-28
104 4 Ast3 Astrocytes all COLEC12 81035 16016 1.61 1.31e-28
104 4 Ast3 Astrocytes all ANGPTL4 51129 16039 1.43 1.67e-28
104 4 Ast3 Astrocytes all CLIC4 25932 13518 2.43 9.28e-28
104 4 Ast3 Astrocytes all DTNA 1837 3057 0.88 1.18e-27
104 4 Ast3 Astrocytes all ZFP36 7538 12862 2.23 1.36e-27
104 4 Ast3 Astrocytes all MACF1 23499 13664 0.8 4.64e-25
104 4 Ast3 Astrocytes all CNTNAP3B 728577 32035 1.5 8.01e-24
104 4 Ast3 Astrocytes all GFAP 2670 4235 1.05 1.14e-22
104 4 Ast3 Astrocytes all MAP3K14 9020 6853 2.48 1.4e-22
104 4 Ast3 Astrocytes all RALGDS 5900 9842 1.76 2.82e-22
104 4 Ast3 Astrocytes all DST 667 1090 0.94 5.01e-22
104 4 Ast3 Astrocytes all CPNE8 144402 23498 1.78 2.37e-21
104 4 Ast3 Astrocytes all BCL6 604 1001 1.41 5.05e-21
104 4 Ast3 Astrocytes all F3 2152 3541 1.49 7.97e-21
104 4 Ast3 Astrocytes all SLC39A14 23516 20858 1.85 8.74e-21
104 4 Ast3 Astrocytes all LIMK2 3985 6614 2.06 9.54e-21
104 4 Ast3 Astrocytes all PDE8B 8622 8794 1.78 1.3e-20
104 4 Ast3 Astrocytes all MFHAS1 9258 16982 1.34 1.55e-19
104 4 Ast3 Astrocytes all CADPS 8618 1426 2.45 3e-19
104 4 Ast3 Astrocytes all ETV6 2120 3495 1.73 2.73e-18
104 4 Ast3 Astrocytes all MAOB 4129 6834 1.44 5.46e-18
104 4 Ast3 Astrocytes all TRIO 7204 12303 1.21 6.52e-18
104 4 Ast3 Astrocytes all FAM189A2 9413 24820 1.5 9.99e-18
104 4 Ast3 Astrocytes all HIPK3 10114 4915 1.43 1.03e-17
104 4 Ast3 Astrocytes all MAPRE2 10982 6891 1.3 2.13e-17
104 4 Ast3 Astrocytes all SLC1A3 6507 10941 0.61 3.38e-16
104 4 Ast3 Astrocytes all NAV1 89796 15989 1.22 4.47e-16
104 4 Ast3 Astrocytes all TENM4 26011 29945 1.27 7.13e-16
104 4 Ast3 Astrocytes all NRP1 8829 8004 1.44 1.07e-15
104 4 Ast3 Astrocytes all MGST1 4257 7061 1 1.07e-15
104 4 Ast3 Astrocytes all SLC20A2 6575 10947 1.37 1.07e-15
104 4 Ast3 Astrocytes all ZIC1 7545 12872 1.61 3e-15
104 4 Ast3 Astrocytes all PIP4K2A 5305 8997 1.31 1.12e-14
104 4 Ast3 Astrocytes all SCARA3 51435 19000 1.25 1.56e-14
104 4 Ast3 Astrocytes all RGL1 23179 30281 1.16 2.92e-14
104 4 Ast3 Astrocytes all MRVI1 10335 7237 1.25 1.12e-13
104 4 Ast3 Astrocytes all C4orf19 55286 25618 1.5 2.04e-13
104 4 Ast3 Astrocytes all C3orf70 285382 33731 1.38 2.07e-13
104 4 Ast3 Astrocytes all CDHR3 222256 26308 1.09 2.57e-13
104 4 Ast3 Astrocytes all KCNQ3 3786 6297 1.18 5.92e-13
104 4 Ast3 Astrocytes all PLCE1 51196 17175 1.13 5.92e-13
104 4 Ast3 Astrocytes all RYR3 6263 10485 0.56 1.18e-12
104 4 Ast3 Astrocytes all MSRA 4482 7377 1.03 2.38e-12
104 4 Ast3 Astrocytes all AHCYL1 10768 344 0.82 2.5e-12
104 4 Ast3 Astrocytes all TANC1 85461 29364 1.4 3.77e-12
104 4 Ast3 Astrocytes all ALDH1L1 10840 3978 0.99 4.2e-12
104 4 Ast3 Astrocytes all ABCC9 10060 60 1.29 4.98e-12
104 4 Ast3 Astrocytes all CNTNAP3 79937 13834 1.16 7.9e-12
104 4 Ast3 Astrocytes all SORBS1 10580 14565 0.62 1.68e-11
104 4 Ast3 Astrocytes all NAV2 89797 15997 0.7 2.1e-11
104 4 Ast3 Astrocytes all TMBIM1 64114 23410 1.25 4.31e-11
104 4 Ast3 Astrocytes all DIP2C 22982 29150 1.05 4.72e-11
104 4 Ast3 Astrocytes all MFAP3L 9848 29083 1.16 4.96e-11
104 4 Ast3 Astrocytes all SLC44A3 126969 28689 1.28 6.13e-11
104 4 Ast3 Astrocytes all IGFBP7 3490 5476 1.06 8.55e-11
104 4 Ast3 Astrocytes all HDHD3 81932 28171 1.38 1.04e-10
104 4 Ast3 Astrocytes all HDAC7 51564 14067 1.43 1.26e-10
104 4 Ast3 Astrocytes all CACHD1 57685 29314 0.89 1.29e-10
104 4 Ast3 Astrocytes all KCND3 3752 6239 1.39 1.64e-10
104 4 Ast3 Astrocytes all GAB2 9846 14458 1.21 1.64e-10
104 4 Ast3 Astrocytes all PTPN9 5780 9661 1.09 1.72e-10
104 4 Ast3 Astrocytes all BAALC 79870 14333 1.14 4.81e-10
104 4 Ast3 Astrocytes all DENND4A 10260 24321 0.93 9.15e-10
104 4 Ast3 Astrocytes all RGS20 8601 14600 0.74 1.04e-09
104 4 Ast3 Astrocytes all TMEM164 84187 26217 1.11 1.05e-09
104 4 Ast3 Astrocytes all NEO1 4756 7754 0.85 1.44e-09
104 4 Ast3 Astrocytes all SMURF2 64750 16809 0.89 2.29e-09
104 4 Ast3 Astrocytes all PRKCA 5578 9393 0.64 3.12e-09
104 4 Ast3 Astrocytes all NTRK3 4916 8033 0.8 4.52e-09
104 4 Ast3 Astrocytes all CMIP 80790 24319 1.03 4.52e-09
104 4 Ast3 Astrocytes all DAP3 7818 2673 1.11 4.82e-09
104 4 Ast3 Astrocytes all CNN3 1266 2157 0.95 5.41e-09
104 4 Ast3 Astrocytes all LTBP1 4052 6714 1.01 6.79e-09
104 4 Ast3 Astrocytes all PAM 5066 8596 1.2 8.37e-09
104 4 Ast3 Astrocytes all GNA12 2768 4380 0.93 1.02e-08
104 4 Ast3 Astrocytes all DOCK4 9732 19192 0.51 1.06e-08
104 4 Ast3 Astrocytes all AKAP13 11214 371 1.06 1.33e-08
104 4 Ast3 Astrocytes all PSMG4 389362 21108 1.07 2.2e-08
104 4 Ast3 Astrocytes all TMTC2 160335 25440 0.85 2.26e-08
104 4 Ast3 Astrocytes all EVA1C 59271 13239 0.94 2.82e-08
104 4 Ast3 Astrocytes all CLIP1 6249 10461 0.91 3.13e-08
104 4 Ast3 Astrocytes all ITGB4 3691 6158 0.54 4.1e-08
104 4 Ast3 Astrocytes all RTN4 57142 14085 0.67 4.33e-08
104 4 Ast3 Astrocytes all PTPRZ1 5803 9685 0.66 5.45e-08
104 4 Ast3 Astrocytes all DPY19L3 147991 27120 1.1 6.26e-08
104 4 Ast3 Astrocytes all SLC9A9 285195 20653 0.9 6.74e-08
104 4 Ast3 Astrocytes all ST8SIA1 6489 10869 1.05 7.03e-08
104 4 Ast3 Astrocytes all PMP2 5375 9117 0.92 7.18e-08
104 4 Ast3 Astrocytes all TNFRSF1A 7132 11916 1.02 1.13e-07
104 4 Ast3 Astrocytes all XKR6 286046 27806 0.77 1.14e-07
104 4 Ast3 Astrocytes all SOD2 6648 11180 1.29 1.39e-07
104 4 Ast3 Astrocytes all IFITM3 10410 5414 0.87 1.39e-07
104 4 Ast3 Astrocytes all TULP3 7289 12425 0.86 1.39e-07
104 4 Ast3 Astrocytes all STAT3 6774 11364 0.98 1.61e-07
104 4 Ast3 Astrocytes all DPYSL2 1808 3014 0.72 1.66e-07
104 4 Ast3 Astrocytes all ANO5 203859 27337 0.97 2.3e-07
104 4 Ast3 Astrocytes all PHACTR3 116154 15833 0.72 2.53e-07
104 4 Ast3 Astrocytes all TMTC1 83857 24099 1.16 3.17e-07
104 4 Ast3 Astrocytes all CACNA1C 775 1390 0.96 3.94e-07
104 4 Ast3 Astrocytes all ANKRD28 23243 29024 0.95 5.58e-07
104 4 Ast3 Astrocytes all ITPR2 3709 6181 0.51 5.58e-07
104 4 Ast3 Astrocytes all INTS10 55174 25548 0.86 6.54e-07
104 4 Ast3 Astrocytes all PHKG1 5260 8930 0.94 7.67e-07
104 4 Ast3 Astrocytes all UBAC2 337867 20486 0.77 9.39e-07
104 4 Ast3 Astrocytes all FGF2 2247 3676 0.98 9.4e-07
104 4 Ast3 Astrocytes all ENTPD1 953 3363 0.93 1.02e-06
104 4 Ast3 Astrocytes all RALGAPA2 57186 16207 0.87 1.07e-06
104 4 Ast3 Astrocytes all FLOT1 10211 3757 0.92 1.1e-06
104 4 Ast3 Astrocytes all LRIG1 26018 17360 0.57 1.3e-06
104 4 Ast3 Astrocytes all SYT17 51760 24119 0.81 1.35e-06
104 4 Ast3 Astrocytes all CYB5B 80777 24374 0.8 1.55e-06
104 4 Ast3 Astrocytes all NUDT3 11165 8050 1.02 1.57e-06
104 4 Ast3 Astrocytes all ARIH1 25820 689 0.77 1.8e-06
104 4 Ast3 Astrocytes all INPP5F 22876 17054 1.05 1.86e-06
104 4 Ast3 Astrocytes all ZCCHC24 219654 26911 1.11 1.87e-06
104 4 Ast3 Astrocytes all MARCHF3 115123 28728 1.18 3.15e-06
104 4 Ast3 Astrocytes all SEPTIN9 10801 7323 1.02 3.35e-06
104 4 Ast3 Astrocytes all SPDYE2 441273 33841 0.89 3.44e-06
104 4 Ast3 Astrocytes all RAB11A 8766 9760 0.75 4.15e-06
104 4 Ast3 Astrocytes all MRTFB 57496 29819 0.81 4.41e-06
104 4 Ast3 Astrocytes all TGFB2 7042 11768 0.67 4.57e-06
104 4 Ast3 Astrocytes all GLI2 2736 4318 0.57 4.72e-06
104 4 Ast3 Astrocytes all FADS2 9415 3575 0.7 5.66e-06
104 4 Ast3 Astrocytes all MAP4 4134 6862 0.58 7.98e-06
104 4 Ast3 Astrocytes all RPS6KA5 9252 10434 0.69 8.81e-06
104 4 Ast3 Astrocytes all LRRC3B 116135 28105 0.81 8.82e-06
104 4 Ast3 Astrocytes all RANBP9 10048 13727 1.13 1.08e-05
104 4 Ast3 Astrocytes all SMAD1 4086 6767 0.56 1.13e-05
104 4 Ast3 Astrocytes all PPFIA1 8500 9245 0.81 1.19e-05
104 4 Ast3 Astrocytes all NRCAM 4897 7994 0.58 1.25e-05
104 4 Ast3 Astrocytes all AC069368.3 NULL 1 1.25e-05
104 4 Ast3 Astrocytes all CAST 831 1515 0.84 1.66e-05
104 4 Ast3 Astrocytes all UNC5C 8633 12569 0.7 1.81e-05
104 4 Ast3 Astrocytes all SMG6 23293 17809 0.83 1.83e-05
104 4 Ast3 Astrocytes all HOPX 84525 24961 0.94 1.88e-05
104 4 Ast3 Astrocytes all MYO9A 4649 7608 0.54 2.44e-05
104 4 Ast3 Astrocytes all STK3 6788 11406 0.68 2.59e-05
104 4 Ast3 Astrocytes all ITGA6 3655 6142 0.67 2.94e-05
104 4 Ast3 Astrocytes all ABCD4 5826 68 1.33 2.94e-05
104 4 Ast3 Astrocytes all PFKFB3 5209 8874 0.78 3.04e-05
104 4 Ast3 Astrocytes all SLC25A26 115286 20661 0.62 3.37e-05
104 4 Ast3 Astrocytes all MED27 9442 2377 0.97 3.66e-05
104 4 Ast3 Astrocytes all AGAP1 116987 16922 0.71 4.46e-05
104 4 Ast3 Astrocytes all GLIS3 169792 28510 0.57 5.57e-05
104 4 Ast3 Astrocytes all UBE2B 7320 12473 0.77 6.32e-05
104 4 Ast3 Astrocytes all SLC6A11 6538 11044 0.62 7.09e-05
104 4 Ast3 Astrocytes all LIMS1 3987 6616 1.1 9e-05
104 4 Ast3 Astrocytes all AVL9 23080 28994 0.8 9.31e-05
104 4 Ast3 Astrocytes all MAPK4 5596 6878 0.66 0.000139699960363
104 4 Ast3 Astrocytes all PRRX1 5396 9142 1.07 0.000150618489375
104 4 Ast3 Astrocytes all FAM135A 57579 21084 0.67 0.000154712606289
104 4 Ast3 Astrocytes all AGO2 27161 3263 0.66 0.000160836687568
104 4 Ast3 Astrocytes all PSD3 23362 19093 0.51 0.000166069272207
104 4 Ast3 Astrocytes all GALNT18 374378 30488 0.72 0.000181882811396
104 4 Ast3 Astrocytes all TAF15 8148 11547 0.68 0.000185122481413
104 4 Ast3 Astrocytes all BRD4 23476 13575 0.99 0.000203542633864
104 4 Ast3 Astrocytes all ANKRD12 23253 29135 0.58 0.000205970128769
104 4 Ast3 Astrocytes all PRRC2B 84726 28121 0.55 0.000212535287098
104 4 Ast3 Astrocytes all PKD2 5311 9009 0.63 0.000219170446972
104 4 Ast3 Astrocytes all MGAT5 4249 7049 0.84 0.000234922272083
104 4 Ast3 Astrocytes all AFF4 27125 17869 0.68 0.000260726996297
104 4 Ast3 Astrocytes all TAF1D 79101 28759 0.82 0.000262601276212
104 4 Ast3 Astrocytes all BMPR1B 658 1077 0.54 0.000269339543438
104 4 Ast3 Astrocytes all ANOS1 3730 6211 1.08 0.000269339543438
104 4 Ast3 Astrocytes all NRG2 9542 7998 0.87 0.000304077625871
104 4 Ast3 Astrocytes all TRIM9 114088 16288 0.66 0.000390833733646
104 4 Ast3 Astrocytes all BMPR2 659 1078 0.9 0.000394409594584
104 4 Ast3 Astrocytes all UBE2H 7328 12484 0.62 0.000394409594584
104 4 Ast3 Astrocytes all PKIA 5569 9017 0.64 0.000398000755564
104 4 Ast3 Astrocytes all TMEM241 85019 31723 0.78 0.000415020464197
104 4 Ast3 Astrocytes all PPP3CA 5530 9314 0.59 0.00042009623229
104 4 Ast3 Astrocytes all ITGAV 3685 6150 0.55 0.000428770329738
104 4 Ast3 Astrocytes all PRICKLE2 166336 20340 0.85 0.000431224385231
104 4 Ast3 Astrocytes all TMEM87A 25963 24522 0.63 0.000467637931337
104 4 Ast3 Astrocytes all TSC22D1 8848 16826 0.54 0.000472194634339
104 4 Ast3 Astrocytes all TUBB2B 347733 30829 0.66 0.000477909328568
104 4 Ast3 Astrocytes all WASF2 10163 12733 0.61 0.000500309829855
104 4 Ast3 Astrocytes all SCML1 6322 10580 0.9 0.00057162154562
104 4 Ast3 Astrocytes all SLC7A2 6542 11060 0.55 0.000574399851629
104 4 Ast3 Astrocytes all HMBOX1 79618 26137 0.6 0.00063463642554
104 4 Ast3 Astrocytes all B2M 567 914 0.63 0.000741931281856
104 4 Ast3 Astrocytes all KLF7 8609 6350 0.68 0.000777001998878
104 4 Ast3 Astrocytes all TUBA1A 7846 20766 0.63 0.000835750246238
104 4 Ast3 Astrocytes all REV3L 5980 9968 0.5 0.000882989116198
104 4 Ast3 Astrocytes all ARHGEF10 9639 14103 0.73 0.000893929364619
104 4 Ast3 Astrocytes all PATJ 10207 28881 0.63 0.001046171304282
104 4 Ast3 Astrocytes all EFR3A 23167 28970 0.62 0.001081089844096
104 4 Ast3 Astrocytes all AKAP12 9590 370 0.55 0.001114867908208
104 4 Ast3 Astrocytes all SSBP2 23635 15831 0.54 0.001412512440228
104 4 Ast3 Astrocytes all PDXK 8566 8819 0.53 0.001423850090518
104 4 Ast3 Astrocytes all SERINC5 256987 18825 0.57 0.001441092135676
104 4 Ast3 Astrocytes all KNOP1 400506 34404 0.57 0.00145978474186
104 4 Ast3 Astrocytes all ADCY9 115 240 0.63 0.001495137851401
104 4 Ast3 Astrocytes all MAP2K4 6416 6844 0.65 0.001549268017346
104 4 Ast3 Astrocytes all FOXJ3 22887 29178 0.85 0.001558466833208
104 4 Ast3 Astrocytes all TOP1 7150 11986 0.55 0.001558466833208
104 4 Ast3 Astrocytes all PALLD 23022 17068 0.73 0.001614104944475
104 4 Ast3 Astrocytes all FAT3 120114 23112 0.61 0.001614104944475
104 4 Ast3 Astrocytes all SLC22A23 63027 21106 0.59 0.001662301644364
104 4 Ast3 Astrocytes all BCR 613 1014 0.51 0.001913392451692
104 4 Ast3 Astrocytes all SLC13A3 64849 14430 0.73 0.002508552114903
104 4 Ast3 Astrocytes all ATXN7L1 222255 22210 0.56 0.002517626580008
104 4 Ast3 Astrocytes all PLOD2 5352 9082 0.58 0.002752394746137
104 4 Ast3 Astrocytes all PLSCR4 57088 16497 0.5 0.003484365746189
104 4 Ast3 Astrocytes all FKBP5 2289 3721 0.64 0.003663432370807
104 4 Ast3 Astrocytes all WWC1 23286 29435 0.51 0.003664566104767
104 4 Ast3 Astrocytes all PPP3CC 5533 9316 0.58 0.003664566104767
104 4 Ast3 Astrocytes all MGA 23269 14010 0.67 0.00393548243577
104 4 Ast3 Astrocytes all PDE5A 8654 8784 0.5 0.004221488028901
104 4 Ast3 Astrocytes all PNPLA8 50640 28900 0.78 0.005197107304071
104 4 Ast3 Astrocytes all SF1 7536 12950 0.59 0.005499507320396
104 4 Ast3 Astrocytes all GON4L 54856 25973 0.55 0.00552990758738
104 4 Ast3 Astrocytes all DNER 92737 24456 0.56 0.007139050941208
104 4 Ast3 Astrocytes all CTNNA1 1495 2509 0.5 0.007282422213751
104 4 Ast3 Astrocytes all C11orf58 10944 16990 0.64 0.007478006398304
104 4 Ast3 Astrocytes all MINK1 50488 17565 0.5 0.007553187761581
104 4 Ast3 Astrocytes all CAPZA1 829 1488 0.68 0.007589170294526
104 4 Ast3 Astrocytes all MAGI1 9223 946 0.51 0.007926317218711