Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:33
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 38 Oli5 Oligodendrocytes all SGCZ 137868 14075 4.76 0
104 38 Oli5 Oligodendrocytes all CNTN1 1272 2171 4.21 0
104 38 Oli5 Oligodendrocytes all FRY 10129 20367 3.34 0
104 38 Oli5 Oligodendrocytes all MDGA2 161357 19835 3.37 0
104 38 Oli5 Oligodendrocytes all GRIK2 2898 4580 3.64 6.45E-238
104 38 Oli5 Oligodendrocytes all KCNIP4 80333 30083 2.08 4.94E-125
104 38 Oli5 Oligodendrocytes all ERBB4 2066 3432 1.36 1.63E-119
104 38 Oli5 Oligodendrocytes all KCTD8 386617 22394 1.43 3.62E-57
104 38 Oli5 Oligodendrocytes all NLGN1 22871 14291 0.66 1.65E-41
104 38 Oli5 Oligodendrocytes all TNIK 23043 30765 0.96 2.57E-37
104 38 Oli5 Oligodendrocytes all FCHSD2 9873 29114 0.69 1.99E-34
104 38 Oli5 Oligodendrocytes all LSAMP 4045 6705 0.77 2.17E-32
104 38 Oli5 Oligodendrocytes all LRP1B 53353 6693 0.76 1.0E-31
104 38 Oli5 Oligodendrocytes all PTN 5764 9630 1.18 3.88E-29
104 38 Oli5 Oligodendrocytes all LRRTM4 80059 19411 1.07 1.17E-26
104 38 Oli5 Oligodendrocytes all KANK1 23189 19309 0.77 2.38E-26
104 38 Oli5 Oligodendrocytes all CTNND2 1501 2516 0.63 7.24E-26
104 38 Oli5 Oligodendrocytes all FIGN 55137 13285 0.87 2.48E-24
104 38 Oli5 Oligodendrocytes all GRIA4 2893 4574 0.86 4.74E-20
104 38 Oli5 Oligodendrocytes all ADGRL3 23284 20974 0.59 2.5E-17
104 38 Oli5 Oligodendrocytes all FUT9 10690 4020 0.78 1.44E-16
104 38 Oli5 Oligodendrocytes all FRMD4A 55691 25491 0.73 1.77E-16
104 38 Oli5 Oligodendrocytes all KCNAB1 7881 6228 0.86 4.83E-16
104 38 Oli5 Oligodendrocytes all OPALIN 93377 20707 0.54 1.88E-15
104 38 Oli5 Oligodendrocytes all PDE4DIP 9659 15580 0.85 2.85E-15
104 38 Oli5 Oligodendrocytes all GRID2 2895 4576 0.69 1.06E-14
104 38 Oli5 Oligodendrocytes all GRIA2 2891 4572 0.62 9.04E-13
104 38 Oli5 Oligodendrocytes all OMG 4974 8135 0.71 1.02E-12
104 38 Oli5 Oligodendrocytes all RHOBTB3 22836 18757 0.61 3.18E-12
104 38 Oli5 Oligodendrocytes all PDE4D 5144 8783 0.63 2.59E-11
104 38 Oli5 Oligodendrocytes all CHD7 55636 20626 0.53 1.06E-10
104 38 Oli5 Oligodendrocytes all NEGR1 257194 17302 0.5 1.72E-10
104 38 Oli5 Oligodendrocytes all ARHGEF10 9639 14103 0.56 9.92E-10