Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:134
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 37 Oli4 Oligodendrocytes all RASGRF1 5923 9875 3.53 0
104 37 Oli4 Oligodendrocytes all COL18A1 80781 2195 4.78 0
104 37 Oli4 Oligodendrocytes all RBFOX1 54715 18222 3.16 1.67E-257
104 37 Oli4 Oligodendrocytes all AFF3 3899 6473 3.27 4.53E-233
104 37 Oli4 Oligodendrocytes all ACTN2 88 164 2.91 4.9E-228
104 37 Oli4 Oligodendrocytes all DTNA 1837 3057 2.26 5.94E-195
104 37 Oli4 Oligodendrocytes all ANKRD18A 253650 23643 2.28 6.34E-187
104 37 Oli4 Oligodendrocytes all PLEKHG1 57480 20884 2.66 5.83E-158
104 37 Oli4 Oligodendrocytes all SORL1 6653 11185 2.34 8.05E-158
104 37 Oli4 Oligodendrocytes all SLC5A11 115584 23091 1.43 1.94E-156
104 37 Oli4 Oligodendrocytes all RASGRF2 5924 9876 1.68 1.51E-151
104 37 Oli4 Oligodendrocytes all ENPP6 133121 23409 2.37 1.31E-145
104 37 Oli4 Oligodendrocytes all EPHB2 2048 3393 2.35 8.64E-139
104 37 Oli4 Oligodendrocytes all DPYSL5 56896 20637 1.6 1.67E-134
104 37 Oli4 Oligodendrocytes all KCTD8 386617 22394 1.76 6.09E-129
104 37 Oli4 Oligodendrocytes all SLC25A29 123096 20116 1.67 1.93E-100
104 37 Oli4 Oligodendrocytes all FGD4 121512 19125 1.92 3.13E-95
104 37 Oli4 Oligodendrocytes all MACROD2 140733 16126 1.74 2.5E-91
104 37 Oli4 Oligodendrocytes all SEMA5A 9037 10736 1.75 1.67E-85
104 37 Oli4 Oligodendrocytes all ABCA6 23460 36 2.01 2.28E-85
104 37 Oli4 Oligodendrocytes all NEGR1 257194 17302 1.34 4.08E-85
104 37 Oli4 Oligodendrocytes all HIVEP3 59269 13561 1.51 2.46E-78
104 37 Oli4 Oligodendrocytes all TANC2 26115 30212 1.22 4.51E-73
104 37 Oli4 Oligodendrocytes all LRRC63 220416 34296 1.35 6.51E-67
104 37 Oli4 Oligodendrocytes all STAT2 6773 11363 1.6 2.33E-66
104 37 Oli4 Oligodendrocytes all FAM171A1 221061 23522 1.22 3.07E-64
104 37 Oli4 Oligodendrocytes all DHCR24 1718 2859 1.34 4.59E-62
104 37 Oli4 Oligodendrocytes all SYNJ2 8871 11504 0.96 1.9E-61
104 37 Oli4 Oligodendrocytes all PDE4D 5144 8783 1.19 1.41E-60
104 37 Oli4 Oligodendrocytes all MGAT5 4249 7049 1.23 2.3E-59
104 37 Oli4 Oligodendrocytes all SNX29 92017 30542 1.1 4.51E-59
104 37 Oli4 Oligodendrocytes all AGPAT4 56895 20885 0.99 1.11E-58
104 37 Oli4 Oligodendrocytes all ZDHHC14 79683 20341 1.21 5.01E-58
104 37 Oli4 Oligodendrocytes all HYDIN 54768 19368 1.39 7.63E-58
104 37 Oli4 Oligodendrocytes all ARHGAP22 58504 30320 1.3 2.56E-57
104 37 Oli4 Oligodendrocytes all SLC25A13 10165 10983 0.99 1.76E-55
104 37 Oli4 Oligodendrocytes all NTM 50863 17941 0.81 1.89E-54
104 37 Oli4 Oligodendrocytes all DLC1 10395 2897 0.87 2.36E-54
104 37 Oli4 Oligodendrocytes all ZDHHC20 253832 20749 0.98 5.97E-54
104 37 Oli4 Oligodendrocytes all PCSK6 5046 8569 0.95 2.38E-52
104 37 Oli4 Oligodendrocytes all FBXO32 114907 16731 1.35 8.28E-51
104 37 Oli4 Oligodendrocytes all PRKCA 5578 9393 1.19 1.17E-50
104 37 Oli4 Oligodendrocytes all EPB41L2 2037 3379 1.01 2.43E-50
104 37 Oli4 Oligodendrocytes all NAV2 89797 15997 1 3.34E-49
104 37 Oli4 Oligodendrocytes all KIF5C 3800 6325 1.06 1.67E-47
104 37 Oli4 Oligodendrocytes all SOBP 55084 29256 0.97 3.56E-47
104 37 Oli4 Oligodendrocytes all TTLL5 23093 19963 1.12 4.56E-47
104 37 Oli4 Oligodendrocytes all TLN2 83660 15447 1.18 3.32E-46
104 37 Oli4 Oligodendrocytes all COL16A1 1307 2193 1.14 2.0E-45
104 37 Oli4 Oligodendrocytes all MVB12B 89853 23368 0.77 2.86E-44
104 37 Oli4 Oligodendrocytes all BRMS1L 84312 20512 1.14 5.86E-44
104 37 Oli4 Oligodendrocytes all LDB3 11155 15710 0.91 2.19E-43
104 37 Oli4 Oligodendrocytes all PLA2G4C 8605 9037 1.05 3.43E-43
104 37 Oli4 Oligodendrocytes all CHN2 1124 1944 0.8 4.38E-43
104 37 Oli4 Oligodendrocytes all CDK18 5129 8751 0.79 2.12E-42
104 37 Oli4 Oligodendrocytes all RPS6KA2 6196 10431 1.07 1.03E-41
104 37 Oli4 Oligodendrocytes all PHACTR1 221692 20990 1.06 7.52E-40
104 37 Oli4 Oligodendrocytes all ITGA2 3673 6137 0.81 1.82E-39
104 37 Oli4 Oligodendrocytes all MEIS1 4211 7000 1.03 2.21E-39
104 37 Oli4 Oligodendrocytes all LRP2 4036 6694 0.73 1.0E-37
104 37 Oli4 Oligodendrocytes all CORO2B 10391 2256 0.96 1.08E-37
104 37 Oli4 Oligodendrocytes all NKAIN2 154215 16443 0.54 3.93E-36
104 37 Oli4 Oligodendrocytes all TBC1D12 23232 29082 0.83 1.96E-35
104 37 Oli4 Oligodendrocytes all S100B 6285 10500 1.06 3.1E-35
104 37 Oli4 Oligodendrocytes all MAP3K7 6885 6859 0.92 1.39E-34
104 37 Oli4 Oligodendrocytes all HECTD4 283450 26611 0.99 6.53E-33
104 37 Oli4 Oligodendrocytes all MSI2 124540 18585 0.87 3.13E-32
104 37 Oli4 Oligodendrocytes all LGR5 8549 4504 1.01 5.61E-32
104 37 Oli4 Oligodendrocytes all SGCD 6444 10807 0.83 4.81E-31
104 37 Oli4 Oligodendrocytes all SLC13A3 64849 14430 0.86 4.93E-31
104 37 Oli4 Oligodendrocytes all TF 7018 11740 0.59 4.92E-30
104 37 Oli4 Oligodendrocytes all MAN2A1 4124 6824 0.5 1.24E-29
104 37 Oli4 Oligodendrocytes all CNTNAP4 85445 18747 0.59 1.86E-29
104 37 Oli4 Oligodendrocytes all TANC1 85461 29364 0.77 4.69E-29
104 37 Oli4 Oligodendrocytes all PRR5L 79899 25878 0.74 8.77E-29
104 37 Oli4 Oligodendrocytes all PACS2 23241 23794 0.7 2.22E-28
104 37 Oli4 Oligodendrocytes all SAMD12 401474 31750 0.57 3.63E-27
104 37 Oli4 Oligodendrocytes all RAB30 27314 9770 0.74 1.2E-26
104 37 Oli4 Oligodendrocytes all SH3PXD2A 9644 23664 0.74 5.25E-26
104 37 Oli4 Oligodendrocytes all NDE1 54820 17619 0.8 1.4E-25
104 37 Oli4 Oligodendrocytes all AIG1 51390 21607 0.76 1.82E-25
104 37 Oli4 Oligodendrocytes all SPATA6 54558 18309 0.7 5.75E-25
104 37 Oli4 Oligodendrocytes all TESK2 10420 11732 0.66 6.92E-25
104 37 Oli4 Oligodendrocytes all RAPGEF5 9771 16862 0.63 8.03E-25
104 37 Oli4 Oligodendrocytes all APBA2 321 579 0.83 2.35E-24
104 37 Oli4 Oligodendrocytes all PDE1A 5136 8774 0.55 2.93E-24
104 37 Oli4 Oligodendrocytes all FBXL17 64839 13615 0.74 3.19E-24
104 37 Oli4 Oligodendrocytes all GSN 2934 4620 0.51 4.38E-24
104 37 Oli4 Oligodendrocytes all DOCK3 1795 2989 0.53 5.27E-24
104 37 Oli4 Oligodendrocytes all CARNS1 57571 29268 0.65 5.68E-24
104 37 Oli4 Oligodendrocytes all SLC22A23 63027 21106 0.62 6.99E-24
104 37 Oli4 Oligodendrocytes all PPP1R12B 4660 7619 0.6 1.74E-23
104 37 Oli4 Oligodendrocytes all ASAP1 50807 2720 0.72 2.31E-23
104 37 Oli4 Oligodendrocytes all ATP9B 374868 13541 0.62 4.3E-23
104 37 Oli4 Oligodendrocytes all ST6GALNAC3 256435 19343 0.55 5.6E-23
104 37 Oli4 Oligodendrocytes all NT5DC1 221294 21556 0.59 7.3E-23
104 37 Oli4 Oligodendrocytes all MYO1E 4643 7599 0.57 1.17E-22
104 37 Oli4 Oligodendrocytes all MAPRE2 10982 6891 0.64 1.31E-22
104 37 Oli4 Oligodendrocytes all MAGI1 9223 946 0.53 1.77E-22
104 37 Oli4 Oligodendrocytes all SLC4A8 9498 11034 0.69 2.6E-22
104 37 Oli4 Oligodendrocytes all LDLRAD3 143458 27046 0.61 7.0E-22
104 37 Oli4 Oligodendrocytes all RUFY2 55680 19761 0.69 1.24E-21
104 37 Oli4 Oligodendrocytes all SLC39A11 201266 14463 0.51 1.57E-21
104 37 Oli4 Oligodendrocytes all MAPK10 5602 6872 0.63 2.28E-21
104 37 Oli4 Oligodendrocytes all KCTD7 154881 21957 0.7 6.82E-21
104 37 Oli4 Oligodendrocytes all SASH1 23328 19182 0.65 7.61E-21
104 37 Oli4 Oligodendrocytes all MAP1B 4131 6836 0.64 8.19E-21
104 37 Oli4 Oligodendrocytes all CEP170 9859 28920 0.59 1.8E-20
104 37 Oli4 Oligodendrocytes all ADK 132 257 0.57 3.3E-20
104 37 Oli4 Oligodendrocytes all SCAPER 49855 13081 0.56 9.26E-20
104 37 Oli4 Oligodendrocytes all RALGPS1 9649 16851 0.66 1.04E-19
104 37 Oli4 Oligodendrocytes all FAM124A 220108 26413 0.6 1.05E-19
104 37 Oli4 Oligodendrocytes all DYNC1I1 1780 2963 0.59 7.37E-19
104 37 Oli4 Oligodendrocytes all IQCJ-SCHIP1 100505385 38842 0.66 8.9E-19
104 37 Oli4 Oligodendrocytes all RBM25 58517 23244 0.5 9.33E-19
104 37 Oli4 Oligodendrocytes all DTNB 1838 3058 0.53 9.34E-19
104 37 Oli4 Oligodendrocytes all MTCH1 23787 17586 0.51 2.2E-18
104 37 Oli4 Oligodendrocytes all SH3KBP1 30011 13867 0.57 3.99E-18
104 37 Oli4 Oligodendrocytes all FAR1 84188 26222 0.55 5.72E-18
104 37 Oli4 Oligodendrocytes all RPS6KA5 9252 10434 0.52 6.07E-18
104 37 Oli4 Oligodendrocytes all CCDC91 55297 24855 0.59 8.04E-18
104 37 Oli4 Oligodendrocytes all TTLL11 158135 18113 0.54 1.18E-17
104 37 Oli4 Oligodendrocytes all PAQR8 85315 15708 0.5 1.77E-17
104 37 Oli4 Oligodendrocytes all FBN1 2200 3603 0.65 2.11E-17
104 37 Oli4 Oligodendrocytes all TTC7A 57217 19750 0.6 2.82E-17
104 37 Oli4 Oligodendrocytes all RASGRP3 25780 14545 0.53 5.63E-17
104 37 Oli4 Oligodendrocytes all LSS 4047 6708 0.6 4.25E-16
104 37 Oli4 Oligodendrocytes all DNAJB2 3300 5228 0.51 7.39E-16
104 37 Oli4 Oligodendrocytes all USP40 55230 20069 0.57 2.42E-15
104 37 Oli4 Oligodendrocytes all TFDP2 7029 11751 0.54 6.06E-15
104 37 Oli4 Oligodendrocytes all CASTOR3 352954 29954 0.53 6.19E-14
104 37 Oli4 Oligodendrocytes all USP31 57478 20060 0.55 1.92E-13
104 37 Oli4 Oligodendrocytes all ZNF518A 9849 29009 0.5 4.97E-13
104 37 Oli4 Oligodendrocytes all PI4KA 5297 8983 0.53 1.16E-12