Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:39
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 36 Oli3 Oligodendrocytes all HSPA1A 3303 5232 3.69 0
104 36 Oli3 Oligodendrocytes all HSPA1B 3304 5233 5.18 0
104 36 Oli3 Oligodendrocytes all HSP90AA1 3320 5253 1.14 3.7e-69
104 36 Oli3 Oligodendrocytes all CRYAB 1410 2389 0.93 2.4e-46
104 36 Oli3 Oligodendrocytes all HSP90AB1 3326 5258 1.09 1.82e-35
104 36 Oli3 Oligodendrocytes all FTH1 2495 3976 0.54 4.01e-26
104 36 Oli3 Oligodendrocytes all CDKL1 8814 1781 0.86 9.42e-23
104 36 Oli3 Oligodendrocytes all SERF2 10169 10757 0.86 3.16e-21
104 36 Oli3 Oligodendrocytes all EIF1 10209 3249 0.82 3.74e-20
104 36 Oli3 Oligodendrocytes all PTGES3 10728 16049 0.83 1.41e-17
104 36 Oli3 Oligodendrocytes all UBC 7316 12468 0.79 1.1e-16
104 36 Oli3 Oligodendrocytes all PRDX1 5052 9352 0.75 4.82e-16
104 36 Oli3 Oligodendrocytes all XPO1 7514 12825 0.69 5.15e-16
104 36 Oli3 Oligodendrocytes all TMSB4X 7114 11881 0.7 7.81e-16
104 36 Oli3 Oligodendrocytes all SOD1 6647 11179 0.8 7.54e-15
104 36 Oli3 Oligodendrocytes all B2M 567 914 0.72 2.81e-14
104 36 Oli3 Oligodendrocytes all PTPN13 5783 9646 0.66 1.93e-13
104 36 Oli3 Oligodendrocytes all RPS25 6230 10413 0.7 5.96e-13
104 36 Oli3 Oligodendrocytes all APOD 347 612 0.6 1.77e-12
104 36 Oli3 Oligodendrocytes all DYNLL1 8655 15476 0.57 2.84e-12
104 36 Oli3 Oligodendrocytes all SELENOW 6415 10752 0.58 3.3e-12
104 36 Oli3 Oligodendrocytes all PDE4DIP 9659 15580 0.62 5.01e-12
104 36 Oli3 Oligodendrocytes all FTL 2512 3999 0.53 5.11e-12
104 36 Oli3 Oligodendrocytes all SARAF 51669 28789 0.58 1.43e-11
104 36 Oli3 Oligodendrocytes all PPA1 5464 9226 0.65 1.53e-11
104 36 Oli3 Oligodendrocytes all EMC10 284361 27609 0.57 3.07e-11
104 36 Oli3 Oligodendrocytes all EEF1A1 1915 3189 0.63 3.85e-11
104 36 Oli3 Oligodendrocytes all SLC38A2 54407 13448 0.7 6.76e-11
104 36 Oli3 Oligodendrocytes all SELENOP 6414 10751 0.5 1.01e-10
104 36 Oli3 Oligodendrocytes all RPL15 6138 10306 0.6 1.18e-10
104 36 Oli3 Oligodendrocytes all CA2 760 1373 0.6 1.63e-10
104 36 Oli3 Oligodendrocytes all MID1IP1 58526 20715 0.8 4.6e-10
104 36 Oli3 Oligodendrocytes all ITM2B 9445 6174 0.55 4.6e-10
104 36 Oli3 Oligodendrocytes all CFL1 1072 1874 0.6 6.56e-10
104 36 Oli3 Oligodendrocytes all RPLP2 6181 10377 0.55 6.82e-10
104 36 Oli3 Oligodendrocytes all UBB 7314 12463 0.52 8.82e-10
104 36 Oli3 Oligodendrocytes all RPL13A 23521 10304 0.5 1.25e-08
104 36 Oli3 Oligodendrocytes all RPL13 6137 10303 0.54 2.15e-08
104 36 Oli3 Oligodendrocytes all RPS15 6209 10388 0.5 4.51e-08