Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:21
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 34 Oli0 Oligodendrocytes all CADM2 253559 29849 0.73 0
104 34 Oli0 Oligodendrocytes all QDPR 5860 9752 0.71 9.43E-188
104 34 Oli0 Oligodendrocytes all NLGN1 22871 14291 0.63 4.63E-179
104 34 Oli0 Oligodendrocytes all FCHSD2 9873 29114 0.81 1.6E-172
104 34 Oli0 Oligodendrocytes all LAMA2 3908 6482 1.08 3.1E-165
104 34 Oli0 Oligodendrocytes all CNDP1 84735 20675 0.87 8.37E-151
104 34 Oli0 Oligodendrocytes all FTH1 2495 3976 0.5 4.89E-130
104 34 Oli0 Oligodendrocytes all CRYAB 1410 2389 0.54 2.66E-95
104 34 Oli0 Oligodendrocytes all CNTNAP2 26047 13830 0.57 2.1E-86
104 34 Oli0 Oligodendrocytes all LRP1B 53353 6693 0.57 2.44E-72
104 34 Oli0 Oligodendrocytes all ADGRL3 23284 20974 0.55 4.24E-69
104 34 Oli0 Oligodendrocytes all CA2 760 1373 0.68 7.04E-62
104 34 Oli0 Oligodendrocytes all APOD 347 612 0.6 5.08E-60
104 34 Oli0 Oligodendrocytes all CSRP1 1465 2469 0.63 1.28E-52
104 34 Oli0 Oligodendrocytes all NDRG2 57447 14460 0.6 1.52E-49
104 34 Oli0 Oligodendrocytes all OPALIN 93377 20707 0.55 4.95E-46
104 34 Oli0 Oligodendrocytes all H3F3B 3021 4765 0.55 5.17E-38
104 34 Oli0 Oligodendrocytes all CD9 928 1709 0.56 6.2E-38
104 34 Oli0 Oligodendrocytes all OLIG1 116448 16983 0.58 8.6E-38
104 34 Oli0 Oligodendrocytes all RNASE1 6035 10044 0.56 9.27E-38
104 34 Oli0 Oligodendrocytes all GLUL 2752 4341 0.53 5.61E-37