Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:73
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 33 Mic3 Microglia all COLEC12 81035 16016 6.74 4.15e-156
104 33 Mic3 Microglia all F13A1 2162 3531 5.28 1.57e-120
104 33 Mic3 Microglia all SELENOP 6414 10751 5.66 5.65e-107
104 33 Mic3 Microglia all SIGLEC1 6614 11127 5.75 3.67e-80
104 33 Mic3 Microglia all FGF13 2258 3670 6.03 1.56e-64
104 33 Mic3 Microglia all MRC1 4360 7228 3.88 3.32e-57
104 33 Mic3 Microglia all CD163 9332 1631 4.04 2.36e-55
104 33 Mic3 Microglia all ITSN1 6453 6183 3.73 1.57e-40
104 33 Mic3 Microglia all NAMPT 10135 30092 4.09 2.07e-34
104 33 Mic3 Microglia all STARD13 90627 19164 2.85 1.19e-30
104 33 Mic3 Microglia all VAV3 10451 12659 3.31 3.56e-30
104 33 Mic3 Microglia all NRP1 8829 8004 2.77 1.28e-26
104 33 Mic3 Microglia all MAN1A1 4121 6821 2.6 4.04e-26
104 33 Mic3 Microglia all LGMN 5641 9472 3.7 6.51e-26
104 33 Mic3 Microglia all MS4A4A 51338 13371 3.76 6.1e-25
104 33 Mic3 Microglia all RGL1 23179 30281 3.52 4.2e-23
104 33 Mic3 Microglia all PEAK1 79834 29431 2.31 8.94e-23
104 33 Mic3 Microglia all DIRC3 729582 17805 3.35 2.2e-21
104 33 Mic3 Microglia all LYVE1 10894 14687 3.32 6.35e-21
104 33 Mic3 Microglia all RBPJ 3516 5724 2.68 5.86e-20
104 33 Mic3 Microglia all AGFG1 3267 5175 2.55 7.34e-20
104 33 Mic3 Microglia all MYO5A 4644 7602 2.53 1.04e-19
104 33 Mic3 Microglia all USP36 57602 20062 3.21 1.81e-18
104 33 Mic3 Microglia all FOS 2353 3796 2.82 3.3e-16
104 33 Mic3 Microglia all ARHGAP18 93663 21035 2.54 3.36e-16
104 33 Mic3 Microglia all IQGAP2 10788 6111 2.08 1.91e-15
104 33 Mic3 Microglia all WWP1 11059 17004 2.77 2.88e-15
104 33 Mic3 Microglia all ABCA1 19 29 2.69 5.25e-15
104 33 Mic3 Microglia all EDA 1896 3157 2.49 1.09e-14
104 33 Mic3 Microglia all HERPUD1 9709 13744 2.66 3.26e-14
104 33 Mic3 Microglia all TRPS1 7227 12340 2.05 4.1e-14
104 33 Mic3 Microglia all FCHSD2 9873 29114 1.43 9.23e-13
104 33 Mic3 Microglia all AP2A2 161 562 2.38 9.51e-12
104 33 Mic3 Microglia all FMN1 342184 3768 1.69 4e-11
104 33 Mic3 Microglia all EPS15 2060 3419 1.71 1.95e-10
104 33 Mic3 Microglia all DPYD 1806 3012 1.44 1.57e-09
104 33 Mic3 Microglia all RNF144B 255488 21578 2.29 1.91e-09
104 33 Mic3 Microglia all SNX9 51429 14973 2.2 2.04e-09
104 33 Mic3 Microglia all PDGFC 56034 8801 2.38 2.31e-09
104 33 Mic3 Microglia all MTSS1 9788 20443 1.33 1.18e-08
104 33 Mic3 Microglia all ASAP1 50807 2720 1.94 1.49e-08
104 33 Mic3 Microglia all VMP1 81671 29559 1.77 2.94e-08
104 33 Mic3 Microglia all SPATS2L 26010 24574 2.14 1.08e-07
104 33 Mic3 Microglia all MERTK 10461 7027 1.47 1.12e-07
104 33 Mic3 Microglia all FRMD4B 23150 24886 1.4 1.5e-07
104 33 Mic3 Microglia all SAT1 6303 10540 1.61 1.68e-07
104 33 Mic3 Microglia all SRGN 5552 9361 1.54 2.49e-07
104 33 Mic3 Microglia all C20orf194 25943 17721 1.52 2.93e-07
104 33 Mic3 Microglia all SESN1 27244 21595 1.63 1.01e-06
104 33 Mic3 Microglia all FOXP1 27086 3823 0.87 6.16e-06
104 33 Mic3 Microglia all SLC9A9 285195 20653 1 1.37e-05
104 33 Mic3 Microglia all ATG7 10533 16935 1.14 3.16e-05
104 33 Mic3 Microglia all SPIDR 23514 28971 1.07 3.97e-05
104 33 Mic3 Microglia all FKBP5 2289 3721 0.89 0.000169714461596
104 33 Mic3 Microglia all KLF6 1316 2235 1.87 0.000218720857265
104 33 Mic3 Microglia all CYTH1 9267 9501 1.5 0.000266978835298
104 33 Mic3 Microglia all HIST1H2AC 8334 4733 1.42 0.00042291407202
104 33 Mic3 Microglia all CPM 1368 2311 1.26 0.000442148397367
104 33 Mic3 Microglia all ACSL1 2180 3569 1.69 0.000597113834936
104 33 Mic3 Microglia all GRK3 157 290 1.14 0.001532364046097
104 33 Mic3 Microglia all SNX6 58533 14970 1.21 0.002594409827696
104 33 Mic3 Microglia all HIF1A 3091 4910 1.12 0.003142686166545
104 33 Mic3 Microglia all ZEB2 9839 14881 0.61 0.003237857732726
104 33 Mic3 Microglia all FNBP1 23048 17069 1.12 0.003417621440711
104 33 Mic3 Microglia all RNF149 284996 23137 1.01 0.003700282457324
104 33 Mic3 Microglia all RASA2 5922 9872 1.19 0.003883515667491
104 33 Mic3 Microglia all FNDC3B 64778 24670 1.42 0.005040795623401
104 33 Mic3 Microglia all NFIA 4774 7784 1.01 0.00611264834195
104 33 Mic3 Microglia all TENT2 167153 26776 1.31 0.00611264834195
104 33 Mic3 Microglia all WDFY3 23001 20751 1 0.006212338402226
104 33 Mic3 Microglia all FTH1 2495 3976 0.75 0.008638430321863
104 33 Mic3 Microglia all JARID2 3720 6196 1.17 0.008842717488438
104 33 Mic3 Microglia all TCF4 6925 11634 1.1 0.009574373307964