Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:130
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 32 Mic2 Microglia all FYN 2534 4037 6.43 7.33e-222
104 32 Mic2 Microglia all CD247 919 1677 7.48 1.5e-195
104 32 Mic2 Microglia all SKAP1 8631 15605 6.44 1.1e-189
104 32 Mic2 Microglia all BCL11B 64919 13222 9.82 7.02e-138
104 32 Mic2 Microglia all NKG7 4818 7830 8.49 9.37e-138
104 32 Mic2 Microglia all STAT4 6775 11365 6.21 5.23e-135
104 32 Mic2 Microglia all THEMIS 387357 21569 8.57 1.91e-126
104 32 Mic2 Microglia all PRF1 5551 9360 0 2.24e-126
104 32 Mic2 Microglia all ITK 3702 6171 10.3 2.81e-126
104 32 Mic2 Microglia all SLC38A1 81539 13447 6.1 2.26e-119
104 32 Mic2 Microglia all SYNE2 23224 17084 5.81 2.26e-119
104 32 Mic2 Microglia all SAMD3 154075 21574 6.4 3.33e-112
104 32 Mic2 Microglia all ETS1 2113 3488 6.67 5.89e-112
104 32 Mic2 Microglia all PRKCQ 5588 9410 5.58 2.58e-110
104 32 Mic2 Microglia all SLFN12L 100506736 33920 6.45 1.91e-109
104 32 Mic2 Microglia all GZMB 3002 4709 0 1.13e-107
104 32 Mic2 Microglia all CCL5 6352 10632 7.6 8.54e-105
104 32 Mic2 Microglia all GNLY 10578 4414 5.32 4.71e-102
104 32 Mic2 Microglia all PYHIN1 149628 28894 6.14 1.03e-97
104 32 Mic2 Microglia all CBLB 868 1542 4.11 5e-97
104 32 Mic2 Microglia all PPP1R16B 26051 15850 6.36 5.71e-97
104 32 Mic2 Microglia all CD96 10225 16892 5.92 6.44e-95
104 32 Mic2 Microglia all RIPOR2 9750 13872 4.21 4.92e-91
104 32 Mic2 Microglia all RUNX3 864 10473 6.05 5.06e-84
104 32 Mic2 Microglia all GRAP2 9402 4563 6.51 2.75e-82
104 32 Mic2 Microglia all KLF12 11278 6346 3.77 2.15e-78
104 32 Mic2 Microglia all PRKCH 5583 9403 3.36 3.24e-75
104 32 Mic2 Microglia all PITPNC1 26207 21045 3.67 4.99e-75
104 32 Mic2 Microglia all KLRD1 3824 6378 5.19 2.11e-73
104 32 Mic2 Microglia all MCTP2 55784 25636 5.53 1.57e-70
104 32 Mic2 Microglia all CXCR4 7852 2561 4.45 1.31e-63
104 32 Mic2 Microglia all IQGAP2 10788 6111 3.17 6.14e-63
104 32 Mic2 Microglia all ARHGEF3 50650 683 4.12 4.84e-61
104 32 Mic2 Microglia all HLA-A 3105 4931 3.3 1.09e-60
104 32 Mic2 Microglia all SYTL3 94120 15587 3.66 1e-59
104 32 Mic2 Microglia all B2M 567 914 2.63 2.28e-57
104 32 Mic2 Microglia all PARP8 79668 26124 2.94 6.65e-57
104 32 Mic2 Microglia all NCALD 83988 7655 4.19 3.97e-56
104 32 Mic2 Microglia all TOX 9760 18988 4.15 3.35e-54
104 32 Mic2 Microglia all CEMIP2 23670 11869 3.73 7.68e-53
104 32 Mic2 Microglia all HLA-C 3107 4933 3.01 7.57e-50
104 32 Mic2 Microglia all RORA 6095 10258 3.44 2.82e-48
104 32 Mic2 Microglia all SYNE1 23345 17089 3.13 6.75e-45
104 32 Mic2 Microglia all PPP2R2B 5521 9305 3.81 1.48e-44
104 32 Mic2 Microglia all PPP2R5C 5527 9311 2.74 6.57e-44
104 32 Mic2 Microglia all GNG2 54331 4404 2.91 2.36e-40
104 32 Mic2 Microglia all PLCB1 23236 15917 3.85 5.12e-38
104 32 Mic2 Microglia all PTPRC 5788 9666 2.07 1.88e-37
104 32 Mic2 Microglia all HLA-B 3106 4932 2.58 1.99e-36
104 32 Mic2 Microglia all BTG1 694 1130 2.89 6.56e-33
104 32 Mic2 Microglia all CNOT6L 246175 18042 3.63 6.96e-33
104 32 Mic2 Microglia all ATP8A1 10396 13531 3.47 4.82e-31
104 32 Mic2 Microglia all PIP4K2A 5305 8997 2.23 2.28e-30
104 32 Mic2 Microglia all STK38 11329 17847 2.95 5.83e-29
104 32 Mic2 Microglia all TNIK 23043 30765 2.92 1.09e-28
104 32 Mic2 Microglia all CCND3 896 1585 1.94 4.38e-27
104 32 Mic2 Microglia all SMCHD1 23347 29090 2.47 2.29e-25
104 32 Mic2 Microglia all STK17B 9262 11396 2.93 1.33e-24
104 32 Mic2 Microglia all ARID5B 84159 17362 2.61 1.74e-23
104 32 Mic2 Microglia all UTRN 7402 12635 1.99 3.78e-22
104 32 Mic2 Microglia all ID2 3398 5361 2.16 8.43e-22
104 32 Mic2 Microglia all TNFAIP8 25816 17260 2.59 9.23e-22
104 32 Mic2 Microglia all STK10 6793 11388 2.07 5.66e-21
104 32 Mic2 Microglia all KAT2B 8850 8638 2.53 1.63e-20
104 32 Mic2 Microglia all PRKCB 5579 9395 1.72 1.63e-20
104 32 Mic2 Microglia all FNBP1 23048 17069 2.29 4.6e-20
104 32 Mic2 Microglia all RABGAP1L 9910 24663 1.59 8.91e-19
104 32 Mic2 Microglia all AKNA 80709 24108 2.47 1.27e-18
104 32 Mic2 Microglia all ITGAL 3683 6148 2.49 6.58e-18
104 32 Mic2 Microglia all RPL13A 23521 10304 1.75 1.86e-17
104 32 Mic2 Microglia all TXNIP 10628 16952 1.96 7.37e-17
104 32 Mic2 Microglia all PDE7A 5150 8791 2.29 1.45e-14
104 32 Mic2 Microglia all EEF1A1 1915 3189 1.66 1.44e-13
104 32 Mic2 Microglia all ARAP2 116984 16924 2.17 1.61e-13
104 32 Mic2 Microglia all STK4 6789 11408 1.81 6.1e-13
104 32 Mic2 Microglia all CARD11 84433 16393 1.69 1.36e-12
104 32 Mic2 Microglia all ATP2B4 493 817 2.03 2.71e-12
104 32 Mic2 Microglia all RPSA 3921 6502 1.94 3.43e-12
104 32 Mic2 Microglia all SARAF 51669 28789 1.88 5.39e-12
104 32 Mic2 Microglia all PFN1 5216 8881 2.14 5.94e-12
104 32 Mic2 Microglia all CDC42SE2 56990 18547 1.79 1.09e-11
104 32 Mic2 Microglia all RAP1B 5908 9857 1.83 1.2e-11
104 32 Mic2 Microglia all RPL10 6134 10298 1.6 1.24e-11
104 32 Mic2 Microglia all RASA2 5922 9872 2.12 2.47e-11
104 32 Mic2 Microglia all MSN 4478 7373 1.87 1.41e-10
104 32 Mic2 Microglia all CLEC2D 29121 14351 1.88 2.91e-10
104 32 Mic2 Microglia all ACTG1 71 144 2.09 4.36e-09
104 32 Mic2 Microglia all PCNX1 22990 19740 1.64 1.01e-08
104 32 Mic2 Microglia all CYTH1 9267 9501 1.69 1.09e-08
104 32 Mic2 Microglia all SIK3 23387 29165 1.38 1.28e-08
104 32 Mic2 Microglia all SRPK2 6733 11306 1.52 1.69e-08
104 32 Mic2 Microglia all H3F3B 3021 4765 1.89 4.18e-08
104 32 Mic2 Microglia all IKZF1 10320 13176 1.06 6.1e-08
104 32 Mic2 Microglia all ATF7IP 55729 20092 1.49 1.11e-07
104 32 Mic2 Microglia all RAP1GAP2 23108 29176 1.61 1.18e-07
104 32 Mic2 Microglia all RPS27A 6233 10417 1.27 1.34e-07
104 32 Mic2 Microglia all TMSB4X 7114 11881 0.77 1.55e-07
104 32 Mic2 Microglia all EIF1 10209 3249 1.5 2.39e-07
104 32 Mic2 Microglia all RNF213 57674 14539 1.2 5.15e-07
104 32 Mic2 Microglia all ZC3HAV1 56829 23721 1.68 5.35e-07
104 32 Mic2 Microglia all OGA 10724 7056 1.59 6.45e-07
104 32 Mic2 Microglia all EPB41 2035 3377 1.56 1.79e-06
104 32 Mic2 Microglia all PTMA 5757 9623 1.48 1.97e-06
104 32 Mic2 Microglia all RPL15 6138 10306 1.41 3.86e-06
104 32 Mic2 Microglia all AOAH 313 548 1.29 5.05e-06
104 32 Mic2 Microglia all CALM1 801 1442 1.39 5.19e-06
104 32 Mic2 Microglia all FOXP1 27086 3823 0.99 1.22e-05
104 32 Mic2 Microglia all HLA-E 3133 4962 1.22 1.51e-05
104 32 Mic2 Microglia all RPS15 6209 10388 1.12 2.91e-05
104 32 Mic2 Microglia all MBP 4155 6925 1.02 3.04e-05
104 32 Mic2 Microglia all TXNRD1 7296 12437 1.22 3.82e-05
104 32 Mic2 Microglia all TMSB10 9168 11879 0.99 4.12e-05
104 32 Mic2 Microglia all HSP90AA1 3320 5253 1.62 4.9e-05
104 32 Mic2 Microglia all BCL2 596 990 1.67 0.000133649719054
104 32 Mic2 Microglia all ARID4B 51742 15550 1.15 0.000371693565158
104 32 Mic2 Microglia all ATXN1 6310 10548 1.06 0.000388525074298
104 32 Mic2 Microglia all RPL28 6158 10330 0.8 0.000397992038457
104 32 Mic2 Microglia all UBR2 23304 21289 1.17 0.000492788264034
104 32 Mic2 Microglia all SOS1 6654 11187 1.01 0.000647543036318
104 32 Mic2 Microglia all RPS6 6194 10429 1.09 0.000670258911024
104 32 Mic2 Microglia all ANKRD12 23253 29135 0.93 0.000693485113499
104 32 Mic2 Microglia all TNRC6B 23112 29190 0.75 0.000791431834603
104 32 Mic2 Microglia all RPS2 6187 10404 1.02 0.000868604357699
104 32 Mic2 Microglia all CLASP1 23332 17088 1.09 0.001178152914481
104 32 Mic2 Microglia all RPL13 6137 10303 0.84 0.001883014937545
104 32 Mic2 Microglia all MBNL1 4154 6923 0.53 0.002114498656714
104 32 Mic2 Microglia all NCOA2 10499 7669 0.89 0.00336346179795
104 32 Mic2 Microglia all LRBA 987 1742 0.87 0.00414159681474
104 32 Mic2 Microglia all ACTB 60 132 0.94 0.007776326635929
104 32 Mic2 Microglia all CD53 963 1686 1.08 0.009564357716562