Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:77
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 31 Mic1 Microglia all FTL 2512 3999 1.92 6.93E-63
104 31 Mic1 Microglia all SPP1 6696 11255 1.92 2.04E-42
104 31 Mic1 Microglia all RPLP1 6176 10372 2.09 1.26E-39
104 31 Mic1 Microglia all TMEM163 81615 25380 2.23 5.94E-39
104 31 Mic1 Microglia all SLC11A1 6556 10907 2.12 6.84E-39
104 31 Mic1 Microglia all RPLP2 6181 10377 2.12 4.33E-37
104 31 Mic1 Microglia all RPL28 6158 10330 2.03 8.27E-35
104 31 Mic1 Microglia all RPS20 6224 10405 2.06 2.52E-34
104 31 Mic1 Microglia all C1QC 714 1245 1.93 6.21E-33
104 31 Mic1 Microglia all FTH1 2495 3976 1.87 1.03E-32
104 31 Mic1 Microglia all RPL19 6143 10312 2.39 1.27E-32
104 31 Mic1 Microglia all RPS15 6209 10388 1.8 4.89E-32
104 31 Mic1 Microglia all RPL35 11224 10344 2.24 9.26E-32
104 31 Mic1 Microglia all C1QB 713 1242 1.73 2.3E-31
104 31 Mic1 Microglia all RPL13 6137 10303 1.64 2.26E-30
104 31 Mic1 Microglia all RPS19 6223 10402 1.37 2.64E-29
104 31 Mic1 Microglia all RPS11 6205 10384 2.31 9.39E-29
104 31 Mic1 Microglia all APOE 348 613 1.29 1.91E-28
104 31 Mic1 Microglia all RPS27A 6233 10417 1.61 5.69E-28
104 31 Mic1 Microglia all ACSL1 2180 3569 1.68 8.59E-28
104 31 Mic1 Microglia all C1QA 712 1241 1.7 8.64E-28
104 31 Mic1 Microglia all RPL13A 23521 10304 1.47 1.82E-26
104 31 Mic1 Microglia all PLEKHA7 144100 27049 2.1 2.75E-26
104 31 Mic1 Microglia all RPS24 6229 10411 2.16 2.97E-26
104 31 Mic1 Microglia all TMSB4X 7114 11881 0.99 3.19E-25
104 31 Mic1 Microglia all RPL32 6161 10336 2.17 3.4E-25
104 31 Mic1 Microglia all RPS2 6187 10404 1.74 6.76E-23
104 31 Mic1 Microglia all VSIG4 11326 17032 1.29 9.95E-23
104 31 Mic1 Microglia all RPS6 6194 10429 1.76 5.12E-22
104 31 Mic1 Microglia all RPS8 6202 10441 1.83 1.04E-21
104 31 Mic1 Microglia all RPL31 6160 10334 1.81 1.74E-20
104 31 Mic1 Microglia all RPL27A 6157 10329 1.67 5.51E-20
104 31 Mic1 Microglia all RPS16 6217 10396 1.54 5.51E-20
104 31 Mic1 Microglia all RPS3 6188 10420 1.48 2.35E-19
104 31 Mic1 Microglia all RPL10 6134 10298 1.25 2.78E-19
104 31 Mic1 Microglia all TPT1 7178 12022 1.55 8.63E-19
104 31 Mic1 Microglia all CST3 1471 2475 1.47 9.17E-19
104 31 Mic1 Microglia all TMSB10 9168 11879 1.25 4.7E-18
104 31 Mic1 Microglia all HLA-DRA 3122 4947 1.43 1.5E-17
104 31 Mic1 Microglia all CD74 972 1697 0.99 1.57E-17
104 31 Mic1 Microglia all CD14 929 1628 1.58 2.47E-17
104 31 Mic1 Microglia all TXNRD1 7296 12437 1.42 7.54E-17
104 31 Mic1 Microglia all CTSB 1508 2527 1.03 9.1E-17
104 31 Mic1 Microglia all HLA-DRB1 3123 4948 1.17 2.58E-14
104 31 Mic1 Microglia all ACTB 60 132 1.02 9.11E-14
104 31 Mic1 Microglia all RPS9 6203 10442 1.34 3.23E-13
104 31 Mic1 Microglia all GPX1 2876 4553 1.2 1.41E-12
104 31 Mic1 Microglia all HIF1A 3091 4910 1.1 2.82E-12
104 31 Mic1 Microglia all CYBA 1535 2577 0.83 2.82E-12
104 31 Mic1 Microglia all AMBRA1 55626 25990 1.03 4.23E-12
104 31 Mic1 Microglia all TYROBP 7305 12449 1.01 1.1E-11
104 31 Mic1 Microglia all SLC2A5 6518 11010 0.89 4.41E-11
104 31 Mic1 Microglia all LAPTM5 7805 29612 0.73 1.45E-10
104 31 Mic1 Microglia all HLA-B 3106 4932 0.59 2.37E-9
104 31 Mic1 Microglia all SIPA1L1 26037 20284 1.04 2.78E-9
104 31 Mic1 Microglia all MS4A6A 64231 13375 0.6 2.8E-9
104 31 Mic1 Microglia all TBC1D14 57533 29246 0.74 3.36E-9
104 31 Mic1 Microglia all DPYD 1806 3012 0.79 5.1E-9
104 31 Mic1 Microglia all TUBA1B 10376 18809 0.82 7.37E-9
104 31 Mic1 Microglia all HCLS1 3059 4844 0.82 1.26E-8
104 31 Mic1 Microglia all PDE4B 5142 8781 0.88 1.56E-8
104 31 Mic1 Microglia all SRGN 5552 9361 0.93 1.78E-8
104 31 Mic1 Microglia all EEF1A1 1915 3189 1.01 2.47E-8
104 31 Mic1 Microglia all HSP90AA1 3320 5253 0.63 3.43E-8
104 31 Mic1 Microglia all SAT1 6303 10540 0.51 7.23E-8
104 31 Mic1 Microglia all EPB41L3 23136 3380 0.96 2.93E-7
104 31 Mic1 Microglia all ADGRG1 9289 4512 0.69 4.99E-7
104 31 Mic1 Microglia all PSAP 5660 9498 0.6 9.92E-7
104 31 Mic1 Microglia all DENND3 22898 29134 0.58 1.14E-6
104 31 Mic1 Microglia all RB1 5925 9884 0.52 1.19E-6
104 31 Mic1 Microglia all GAPDH 2597 4141 0.63 1.41E-6
104 31 Mic1 Microglia all PHC2 1912 3183 0.65 7.28E-6
104 31 Mic1 Microglia all HSPA1A 3303 5232 0.68 1.03E-5
104 31 Mic1 Microglia all RNF149 284996 23137 0.62 2.6E-5
104 31 Mic1 Microglia all HCK 3055 4840 0.54 8.27E-5
104 31 Mic1 Microglia all SH3TC1 54436 26009 0.53 0.000219945279288
104 31 Mic1 Microglia all NUMB 8650 8060 0.51 0.001949339278194