Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:110
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 30 Mic0 Microglia all FRMD4A 55691 25491 1.34 1.8e-92
104 30 Mic0 Microglia all PLXDC2 84898 21013 0.92 8.23e-70
104 30 Mic0 Microglia all DOCK4 9732 19192 1.09 9.19e-68
104 30 Mic0 Microglia all SFMBT2 57713 20256 1.27 2.25e-50
104 30 Mic0 Microglia all HS3ST4 9951 5200 1.35 9.64e-50
104 30 Mic0 Microglia all LRMDA 83938 23405 0.82 1.1e-41
104 30 Mic0 Microglia all MEF2C 4208 6996 0.86 3.09e-38
104 30 Mic0 Microglia all KCNQ3 3786 6297 1.28 9.63e-35
104 30 Mic0 Microglia all SYNDIG1 79953 15885 1.42 1.96e-33
104 30 Mic0 Microglia all SRGAP2 23380 19751 0.94 7.24e-32
104 30 Mic0 Microglia all ST6GAL1 6480 10860 0.91 4.91e-31
104 30 Mic0 Microglia all ITPR2 3709 6181 0.81 9.77e-30
104 30 Mic0 Microglia all NAV3 89795 15998 1.23 5.55e-29
104 30 Mic0 Microglia all MEF2A 4205 6993 0.79 1.62e-28
104 30 Mic0 Microglia all ARHGAP24 83478 25361 0.8 3.47e-28
104 30 Mic0 Microglia all P2RY12 64805 18124 1.75 6.07e-28
104 30 Mic0 Microglia all ARHGAP22 58504 30320 1.3 1.27e-27
104 30 Mic0 Microglia all DOCK8 81704 19191 0.84 2.76e-27
104 30 Mic0 Microglia all SORL1 6653 11185 0.93 5.62e-27
104 30 Mic0 Microglia all OXR1 55074 15822 1.19 6.91e-27
104 30 Mic0 Microglia all ST6GALNAC3 256435 19343 1.2 8.39e-25
104 30 Mic0 Microglia all FOXN3 1112 1928 0.73 3.25e-21
104 30 Mic0 Microglia all RASGEF1C 255426 27400 1.93 5.44e-21
104 30 Mic0 Microglia all APBB1IP 54518 17379 0.83 1.01e-20
104 30 Mic0 Microglia all SDK1 221935 19307 1.37 5.39e-19
104 30 Mic0 Microglia all ATP8B4 79895 13536 0.98 2.81e-18
104 30 Mic0 Microglia all EPB41L2 2037 3379 0.81 1.04e-17
104 30 Mic0 Microglia all FMNL3 91010 23698 1.45 2.51e-17
104 30 Mic0 Microglia all FAM149A 25854 24527 1.59 2.65e-17
104 30 Mic0 Microglia all SLC8A1 6546 11068 0.77 9.63e-17
104 30 Mic0 Microglia all GLDN 342035 29514 1.46 1.09e-16
104 30 Mic0 Microglia all ABR 29 81 0.88 1.1e-16
104 30 Mic0 Microglia all HDAC9 9734 14065 0.74 1.58e-16
104 30 Mic0 Microglia all LDLRAD4 753 1224 0.63 1.9e-16
104 30 Mic0 Microglia all MAML2 84441 16259 0.66 3.62e-16
104 30 Mic0 Microglia all LHFPL2 10184 6588 1.05 5.67e-16
104 30 Mic0 Microglia all SRGAP2B 647135 35237 0.9 8.38e-16
104 30 Mic0 Microglia all MAML3 55534 16272 0.77 8.77e-16
104 30 Mic0 Microglia all ABCC4 10257 55 1.01 4.33e-15
104 30 Mic0 Microglia all MTHFD1L 25902 21055 1.08 8.02e-15
104 30 Mic0 Microglia all LRRK1 79705 18608 1.35 2.15e-14
104 30 Mic0 Microglia all DSCAM 1826 3039 1.39 5.15e-14
104 30 Mic0 Microglia all ELMO1 9844 16286 0.59 6.19e-14
104 30 Mic0 Microglia all MARCHF3 115123 28728 1.67 1.37e-13
104 30 Mic0 Microglia all BLNK 29760 14211 1.04 1.77e-13
104 30 Mic0 Microglia all BMP2K 55589 18041 0.86 3.94e-13
104 30 Mic0 Microglia all UBE2E2 7325 12478 0.69 2.33e-12
104 30 Mic0 Microglia all ZFHX3 463 777 0.83 4.18e-12
104 30 Mic0 Microglia all SOCS6 9306 16833 1.28 6.57e-12
104 30 Mic0 Microglia all GNG7 2788 4410 1.19 7.72e-12
104 30 Mic0 Microglia all ADAM28 10863 206 0.8 9.9e-12
104 30 Mic0 Microglia all CSGALNACT1 55790 24290 0.78 1.25e-11
104 30 Mic0 Microglia all TIAM1 7074 11805 1.22 1.62e-11
104 30 Mic0 Microglia all TBC1D22A 25771 1309 0.83 2.77e-11
104 30 Mic0 Microglia all CACNA1A 773 1388 1.28 3.02e-11
104 30 Mic0 Microglia all RASAL2 9462 9874 1.14 5.21e-11
104 30 Mic0 Microglia all LY86 9450 16837 0.91 7.17e-11
104 30 Mic0 Microglia all C3 718 1318 0.68 1.1e-10
104 30 Mic0 Microglia all CYFIP1 23191 13759 0.83 1.11e-10
104 30 Mic0 Microglia all FOXP2 93986 13875 0.97 1.21e-10
104 30 Mic0 Microglia all PALD1 27143 23530 0.88 1.23e-10
104 30 Mic0 Microglia all MAP4K4 9448 6866 0.83 1.26e-10
104 30 Mic0 Microglia all QKI 9444 21100 0.51 1.46e-10
104 30 Mic0 Microglia all SHTN1 57698 29319 1.04 1.71e-10
104 30 Mic0 Microglia all A2M 2 7 0.97 3.2e-10
104 30 Mic0 Microglia all CX3CR1 1524 2558 1.14 4.07e-10
104 30 Mic0 Microglia all SYK 6850 11491 0.75 5.54e-10
104 30 Mic0 Microglia all MAP3K5 4217 6857 0.84 1.2e-09
104 30 Mic0 Microglia all KHDRBS3 10656 18117 1.05 1.2e-09
104 30 Mic0 Microglia all GAB2 9846 14458 0.71 1.76e-09
104 30 Mic0 Microglia all SDCCAG8 10806 10671 0.76 2.34e-09
104 30 Mic0 Microglia all CPED1 79974 26159 1.07 2.51e-09
104 30 Mic0 Microglia all PRKN 5071 8607 0.9 1.06e-08
104 30 Mic0 Microglia all RYR1 6261 10483 1.01 1.47e-08
104 30 Mic0 Microglia all INPP5D 3635 6079 0.6 2.27e-08
104 30 Mic0 Microglia all SNX29 92017 30542 0.78 2.62e-08
104 30 Mic0 Microglia all SRGAP2C 653464 30584 0.82 3.98e-08
104 30 Mic0 Microglia all LPCAT2 54947 26032 0.78 4.07e-08
104 30 Mic0 Microglia all CSF3R 1441 2439 0.86 1.61e-07
104 30 Mic0 Microglia all CSF2RA 1438 2435 0.8 1.69e-07
104 30 Mic0 Microglia all PTPRJ 5795 9673 0.64 1.71e-07
104 30 Mic0 Microglia all MED13L 23389 22962 0.51 6.15e-07
104 30 Mic0 Microglia all RASSF8 11228 13232 0.8 9.93e-07
104 30 Mic0 Microglia all CAMK1D 57118 19341 0.76 1.38e-06
104 30 Mic0 Microglia all ENTPD1 953 3363 1.06 1.7e-06
104 30 Mic0 Microglia all ZNF710 374655 25352 0.76 6.47e-06
104 30 Mic0 Microglia all ATM 472 795 0.57 6.64e-06
104 30 Mic0 Microglia all CAPZB 832 1491 0.66 7.43e-06
104 30 Mic0 Microglia all SH3RF3 344558 24699 0.57 7.46e-06
104 30 Mic0 Microglia all GRID2 2895 4576 0.92 1.11e-05
104 30 Mic0 Microglia all TTC7A 57217 19750 0.81 1.3e-05
104 30 Mic0 Microglia all LRCH1 23143 20309 0.83 1.59e-05
104 30 Mic0 Microglia all NPL 80896 16781 0.65 2.9e-05
104 30 Mic0 Microglia all MKNK1 8569 7110 0.7 4.03e-05
104 30 Mic0 Microglia all ADAP2 55803 16487 0.74 4.77e-05
104 30 Mic0 Microglia all ZBTB20 26137 13503 0.5 5.48e-05
104 30 Mic0 Microglia all GSN 2934 4620 0.7 5.72e-05
104 30 Mic0 Microglia all BNC2 54796 30988 0.59 0.000126342664846
104 30 Mic0 Microglia all RAD51B 5890 9822 0.54 0.000134288169006
104 30 Mic0 Microglia all DISC1 27185 2888 0.5 0.000195332744821
104 30 Mic0 Microglia all DIP2B 57609 29284 0.64 0.000201732312047
104 30 Mic0 Microglia all UVRAG 7405 12640 0.55 0.000218820079459
104 30 Mic0 Microglia all PKN2 5586 9406 0.56 0.000314549120753
104 30 Mic0 Microglia all PCNX2 80003 8736 0.64 0.00034251304485
104 30 Mic0 Microglia all FGD2 221472 3664 0.68 0.00054860075142
104 30 Mic0 Microglia all IL6ST 3572 6021 0.62 0.000799636811226
104 30 Mic0 Microglia all CCDC88A 55704 25523 0.73 0.001616243900217
104 30 Mic0 Microglia all BAZ2B 29994 963 0.53 0.001708934309475
104 30 Mic0 Microglia all IFNGR1 3459 5439 0.51 0.006274553529633
104 30 Mic0 Microglia all FER 2241 3655 0.54 0.007294524996003