Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:71
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 3 Ast2 Astrocytes all DPP10 57628 20823 2.69 3.75E-182
104 3 Ast2 Astrocytes all DCLK1 9201 2700 5.01 7.22E-152
104 3 Ast2 Astrocytes all SLC38A1 81539 13447 5.55 1.36E-149
104 3 Ast2 Astrocytes all TNC 3371 5318 4.09 1.35E-108
104 3 Ast2 Astrocytes all WDR49 151790 26587 3.25 2.52E-93
104 3 Ast2 Astrocytes all KAZN 23254 29173 3.77 4.19E-89
104 3 Ast2 Astrocytes all L3MBTL4 91133 26677 4.17 4.98E-88
104 3 Ast2 Astrocytes all VCAN 1462 2464 3.18 1.9E-84
104 3 Ast2 Astrocytes all SERPINI2 5276 8945 3.54 3.17E-81
104 3 Ast2 Astrocytes all SNED1 25992 24696 2.99 6.28E-81
104 3 Ast2 Astrocytes all CD44 960 1681 3.24 1.31E-62
104 3 Ast2 Astrocytes all TJP2 9414 11828 2.9 6.65E-62
104 3 Ast2 Astrocytes all ID3 3399 5362 3.09 1.59E-57
104 3 Ast2 Astrocytes all FOS 2353 3796 3.5 2.25E-53
104 3 Ast2 Astrocytes all CERS6 253782 23826 2.49 9.69E-47
104 3 Ast2 Astrocytes all PLEKHA5 54477 30036 1.99 4.93E-43
104 3 Ast2 Astrocytes all GPC6 10082 4454 2.67 2.82E-41
104 3 Ast2 Astrocytes all COL21A1 81578 17025 2.22 7.85E-40
104 3 Ast2 Astrocytes all PFKFB2 5208 8873 2.82 2.34E-38
104 3 Ast2 Astrocytes all DGKB 1607 2850 2.53 1.73E-37
104 3 Ast2 Astrocytes all PLCE1 51196 17175 2.32 8.82E-36
104 3 Ast2 Astrocytes all ARHGEF4 50649 684 1.15 5.98E-30
104 3 Ast2 Astrocytes all GFAP 2670 4235 1.25 1.16E-29
104 3 Ast2 Astrocytes all PLXDC2 84898 21013 1.68 8.16E-27
104 3 Ast2 Astrocytes all DPP6 1804 3010 1.89 9.38E-27
104 3 Ast2 Astrocytes all ZFP36L1 677 1107 1.51 7.73E-25
104 3 Ast2 Astrocytes all RNF19A 25897 13432 1.61 5.69E-24
104 3 Ast2 Astrocytes all NAV1 89796 15989 1.51 7.68E-22
104 3 Ast2 Astrocytes all DCLK2 166614 19002 1.07 3.4E-21
104 3 Ast2 Astrocytes all ID2 3398 5361 1.79 7.83E-21
104 3 Ast2 Astrocytes all ADCY8 114 239 1.49 5.1E-20
104 3 Ast2 Astrocytes all UBC 7316 12468 1.86 2.03E-17
104 3 Ast2 Astrocytes all CRYAB 1410 2389 2.24 4.92E-17
104 3 Ast2 Astrocytes all ST6GALNAC3 256435 19343 1.43 4.55E-16
104 3 Ast2 Astrocytes all DLGAP1 9229 2905 1.16 4.55E-16
104 3 Ast2 Astrocytes all SORBS1 10580 14565 0.61 1.67E-15
104 3 Ast2 Astrocytes all HSPA1A 3303 5232 1.46 1.55E-14
104 3 Ast2 Astrocytes all FAM189A2 9413 24820 1.19 5.8E-13
104 3 Ast2 Astrocytes all ANTXR1 84168 21014 1.62 9.0E-13
104 3 Ast2 Astrocytes all DAAM2 23500 18143 1.21 1.04E-11
104 3 Ast2 Astrocytes all BICD1 636 1049 0.99 2.91E-11
104 3 Ast2 Astrocytes all USP54 159195 23513 1.56 6.09E-9
104 3 Ast2 Astrocytes all TAB2 23118 17075 1.24 2.02E-8
104 3 Ast2 Astrocytes all SLC16A9 220963 23520 1.3 4.21E-8
104 3 Ast2 Astrocytes all NAV2 89797 15997 0.62 1.56E-7
104 3 Ast2 Astrocytes all PHYHIPL 84457 29378 1.03 3.84E-7
104 3 Ast2 Astrocytes all AEBP1 165 303 1.42 1.98E-6
104 3 Ast2 Astrocytes all SDCCAG8 10806 10671 0.9 5.9E-6
104 3 Ast2 Astrocytes all GLIS3 169792 28510 0.6 6.59E-6
104 3 Ast2 Astrocytes all INPP4B 8821 6075 0.89 1.04E-5
104 3 Ast2 Astrocytes all AQP4 361 637 0.51 1.42E-5
104 3 Ast2 Astrocytes all PRRX1 5396 9142 1.19 1.89E-5
104 3 Ast2 Astrocytes all CACNA2D3 55799 15460 1.25 2.12E-5
104 3 Ast2 Astrocytes all AKAP6 9472 376 1.06 2.28E-5
104 3 Ast2 Astrocytes all ANKFN1 162282 26766 0.96 2.58E-5
104 3 Ast2 Astrocytes all RFX4 5992 9985 0.56 3.12E-5
104 3 Ast2 Astrocytes all ABR 29 81 0.73 3.76E-5
104 3 Ast2 Astrocytes all ITPKB 3707 6179 0.69 4.6E-5
104 3 Ast2 Astrocytes all BCKDHB 594 987 0.69 0.000114200262815
104 3 Ast2 Astrocytes all ITGB4 3691 6158 0.82 0.000114684785258
104 3 Ast2 Astrocytes all S100B 6285 10500 1.1 0.000115604920768
104 3 Ast2 Astrocytes all KANK1 23189 19309 0.57 0.000179874938137
104 3 Ast2 Astrocytes all PLEC 5339 9069 0.84 0.000332026589842
104 3 Ast2 Astrocytes all AHNAK 79026 347 1.04 0.000334413524603
104 3 Ast2 Astrocytes all H3F3B 3021 4765 1.5 0.000359197688663
104 3 Ast2 Astrocytes all MAOB 4129 6834 1.03 0.000424428481358
104 3 Ast2 Astrocytes all GAN 8139 4137 0.95 0.000432111421969
104 3 Ast2 Astrocytes all UTRN 7402 12635 0.8 0.000581557158043
104 3 Ast2 Astrocytes all DAPK1 1612 2674 0.91 0.000697061308386
104 3 Ast2 Astrocytes all MED13L 23389 22962 0.52 0.001771030463319
104 3 Ast2 Astrocytes all TENM4 26011 29945 0.75 0.007753721646903