Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:245
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 29 In9 Inhibitory neurons all PLEKHH2 130271 30506 6.2 0
104 29 In9 Inhibitory neurons all CA8 767 1382 4.24 4.46e-276
104 29 In9 Inhibitory neurons all NPNT 255743 27405 4.26 9.53e-207
104 29 In9 Inhibitory neurons all TRPS1 7227 12340 3.21 2.38e-205
104 29 In9 Inhibitory neurons all PTPRK 5796 9674 2.99 1.28e-200
104 29 In9 Inhibitory neurons all ZNF385D 79750 26191 1.87 2.82e-185
104 29 In9 Inhibitory neurons all DPP10 57628 20823 1.89 1.27e-172
104 29 In9 Inhibitory neurons all CNTN5 53942 2175 1.72 2.12e-164
104 29 In9 Inhibitory neurons all LHFPL3 375612 6589 2.34 8.2e-141
104 29 In9 Inhibitory neurons all TMEM132D 121256 29411 1.97 6.59e-138
104 29 In9 Inhibitory neurons all GSG1L 146395 28283 3.72 2.61e-126
104 29 In9 Inhibitory neurons all GULP1 51454 18649 2.4 8.51e-126
104 29 In9 Inhibitory neurons all RORA 6095 10258 1.49 8.51e-126
104 29 In9 Inhibitory neurons all TOX 9760 18988 2.23 5.75e-124
104 29 In9 Inhibitory neurons all IQCJ-SCHIP1 100505385 38842 1.89 1.15e-123
104 29 In9 Inhibitory neurons all UNC5B 219699 12568 3.5 2.12e-121
104 29 In9 Inhibitory neurons all THSD7A 221981 22207 1.75 4.32e-120
104 29 In9 Inhibitory neurons all CALN1 83698 13248 1.93 5.96e-118
104 29 In9 Inhibitory neurons all SGCD 6444 10807 2.28 3.35e-113
104 29 In9 Inhibitory neurons all SLC9A9 285195 20653 2.11 1.31e-108
104 29 In9 Inhibitory neurons all CNTNAP3B 728577 32035 2.04 2.23e-101
104 29 In9 Inhibitory neurons all COL11A1 1301 2186 2.51 8.8e-99
104 29 In9 Inhibitory neurons all SRGAP1 57522 17382 2.71 1.55e-95
104 29 In9 Inhibitory neurons all TAFA2 338811 21589 1.51 2.16e-91
104 29 In9 Inhibitory neurons all SDK1 221935 19307 1.46 9.17e-89
104 29 In9 Inhibitory neurons all HPSE2 60495 18374 2.27 9.8e-89
104 29 In9 Inhibitory neurons all TENM4 26011 29945 1.96 3.15e-88
104 29 In9 Inhibitory neurons all PCDH9 5101 8661 1.31 2.8e-87
104 29 In9 Inhibitory neurons all MDGA2 161357 19835 1.2 1.31e-85
104 29 In9 Inhibitory neurons all FRMPD4 9758 29007 1.32 7.03e-82
104 29 In9 Inhibitory neurons all EDIL3 10085 3173 1.72 5.69e-78
104 29 In9 Inhibitory neurons all ADAM12 8038 190 3.1 7.04e-73
104 29 In9 Inhibitory neurons all PTPN13 5783 9646 2.58 2.41e-72
104 29 In9 Inhibitory neurons all ADGRB3 577 945 0.78 3.87e-71
104 29 In9 Inhibitory neurons all LRRC4C 57689 29317 1.04 4.87e-70
104 29 In9 Inhibitory neurons all TMEM132C 92293 25436 1.65 6e-70
104 29 In9 Inhibitory neurons all MEF2C 4208 6996 0.94 6.68e-68
104 29 In9 Inhibitory neurons all NACC2 138151 23846 2.63 6.68e-68
104 29 In9 Inhibitory neurons all RYR1 6261 10483 2.85 1.14e-67
104 29 In9 Inhibitory neurons all DLGAP2 9228 2906 1.87 2.38e-65
104 29 In9 Inhibitory neurons all PLCXD3 345557 31822 1.78 2.72e-64
104 29 In9 Inhibitory neurons all CSMD2 114784 19290 1.69 3.63e-64
104 29 In9 Inhibitory neurons all CABP1 9478 1384 1.85 1.36e-61
104 29 In9 Inhibitory neurons all FSTL5 56884 21386 1.1 5.3e-61
104 29 In9 Inhibitory neurons all ALK 238 427 1.7 1.35e-59
104 29 In9 Inhibitory neurons all UNC5C 8633 12569 1.39 3.68e-58
104 29 In9 Inhibitory neurons all PVALB 5816 9704 2.02 2.72e-55
104 29 In9 Inhibitory neurons all SLITRK5 26050 20295 2.22 2.11e-54
104 29 In9 Inhibitory neurons all ARAP2 116984 16924 2.15 3.61e-54
104 29 In9 Inhibitory neurons all CNTNAP3 79937 13834 1.73 6.79e-52
104 29 In9 Inhibitory neurons all TMTC1 83857 24099 1.68 1.38e-49
104 29 In9 Inhibitory neurons all KCNMB4 27345 6289 2.25 1.45e-49
104 29 In9 Inhibitory neurons all TAFA4 151647 21591 2.38 3.55e-49
104 29 In9 Inhibitory neurons all MYO16 23026 29822 1.08 4.12e-49
104 29 In9 Inhibitory neurons all CDH20 28316 1760 1.83 7.11e-48
104 29 In9 Inhibitory neurons all GRIA4 2893 4574 0.92 1.38e-47
104 29 In9 Inhibitory neurons all ANK1 286 492 1.29 2.81e-47
104 29 In9 Inhibitory neurons all TENM1 10178 8117 1.3 3.15e-47
104 29 In9 Inhibitory neurons all SEZ6L 23544 10763 1.43 6.35e-47
104 29 In9 Inhibitory neurons all GABRG3 2567 4088 1.03 4.44e-45
104 29 In9 Inhibitory neurons all AFF3 3899 6473 1.16 1.2e-44
104 29 In9 Inhibitory neurons all KHDRBS3 10656 18117 1.64 1.63e-42
104 29 In9 Inhibitory neurons all RASSF8 11228 13232 2.15 5.84e-42
104 29 In9 Inhibitory neurons all CNTNAP5 129684 18748 0.89 1.95e-41
104 29 In9 Inhibitory neurons all SPARCL1 8404 11220 0.94 7.59e-41
104 29 In9 Inhibitory neurons all KCNQ5 56479 6299 0.83 6.19e-40
104 29 In9 Inhibitory neurons all SIPA1L1 26037 20284 0.97 2.11e-39
104 29 In9 Inhibitory neurons all SFMBT2 57713 20256 1.57 3.9e-39
104 29 In9 Inhibitory neurons all SHANK2 22941 14295 1.35 1.25e-38
104 29 In9 Inhibitory neurons all PDE4D 5144 8783 0.85 1.29e-38
104 29 In9 Inhibitory neurons all UNC5D 137970 18634 0.84 1.39e-38
104 29 In9 Inhibitory neurons all DOK5 55816 16173 1.88 5.12e-38
104 29 In9 Inhibitory neurons all GRIA1 2890 4571 0.84 5.26e-38
104 29 In9 Inhibitory neurons all KCNIP4 80333 30083 0.58 1.52e-37
104 29 In9 Inhibitory neurons all COL21A1 81578 17025 1.46 5.49e-36
104 29 In9 Inhibitory neurons all PLEKHA1 59338 14335 1.5 2.16e-35
104 29 In9 Inhibitory neurons all ZNF536 9745 29025 0.99 2.29e-35
104 29 In9 Inhibitory neurons all GABRD 2563 4084 1.95 9.85e-35
104 29 In9 Inhibitory neurons all KCNH1 3756 6250 1.19 9.93e-35
104 29 In9 Inhibitory neurons all C1QL1 10882 24182 1.81 1.38e-34
104 29 In9 Inhibitory neurons all COL12A1 1303 2188 1.91 7.66e-34
104 29 In9 Inhibitory neurons all ZNF804B 219578 21958 1.26 1.15e-33
104 29 In9 Inhibitory neurons all OLFM3 118427 17990 1.08 2.26e-33
104 29 In9 Inhibitory neurons all PLD5 200150 26879 0.93 2.54e-33
104 29 In9 Inhibitory neurons all SORL1 6653 11185 1.42 6.69e-32
104 29 In9 Inhibitory neurons all FUT9 10690 4020 1.13 1.71e-31
104 29 In9 Inhibitory neurons all CDH12 1010 1751 0.7 1.72e-31
104 29 In9 Inhibitory neurons all GRID1 2894 4575 1.18 4.84e-31
104 29 In9 Inhibitory neurons all ADCY8 114 239 1.32 6.63e-31
104 29 In9 Inhibitory neurons all CREB5 9586 16844 1.64 3.07e-29
104 29 In9 Inhibitory neurons all ELMO1 9844 16286 1.46 1.85e-28
104 29 In9 Inhibitory neurons all COL4A2 1284 2203 1.99 6.67e-28
104 29 In9 Inhibitory neurons all RBM17 84991 16944 1.96 7.26e-28
104 29 In9 Inhibitory neurons all ASTN2 23245 17021 0.57 3.48e-26
104 29 In9 Inhibitory neurons all ZNF804A 91752 21711 0.67 7.32e-26
104 29 In9 Inhibitory neurons all B3GAT2 135152 922 1.67 1.14e-25
104 29 In9 Inhibitory neurons all MYO1B 4430 7596 1.61 1.54e-25
104 29 In9 Inhibitory neurons all BCL11B 64919 13222 1.08 2.34e-25
104 29 In9 Inhibitory neurons all HS6ST3 266722 19134 0.88 2.63e-25
104 29 In9 Inhibitory neurons all TRMT9B 57604 26725 1.25 2.44e-24
104 29 In9 Inhibitory neurons all ADGRA1 84435 13838 1.7 2.62e-24
104 29 In9 Inhibitory neurons all GNG4 2786 4407 1.5 3.66e-24
104 29 In9 Inhibitory neurons all KCNJ6 3763 6267 1.15 4.31e-24
104 29 In9 Inhibitory neurons all KCNAB1 7881 6228 0.73 1.01e-23
104 29 In9 Inhibitory neurons all DGKB 1607 2850 0.77 1.1e-23
104 29 In9 Inhibitory neurons all VWC2 375567 30200 1.02 1.47e-23
104 29 In9 Inhibitory neurons all CSMD3 114788 19291 0.6 5.69e-23
104 29 In9 Inhibitory neurons all TIAM1 7074 11805 0.76 7.24e-23
104 29 In9 Inhibitory neurons all PKNOX2 63876 16714 1.03 1.13e-21
104 29 In9 Inhibitory neurons all SLC4A10 57282 13811 0.69 4.08e-21
104 29 In9 Inhibitory neurons all GUCY1A1 2982 4685 1.64 6.87e-21
104 29 In9 Inhibitory neurons all ABLIM2 84448 19195 1.39 1.1e-20
104 29 In9 Inhibitory neurons all OSBPL6 114880 16388 0.84 2.64e-20
104 29 In9 Inhibitory neurons all HCN1 348980 4845 0.79 3.38e-20
104 29 In9 Inhibitory neurons all GHR 2690 4263 1.31 1.06e-19
104 29 In9 Inhibitory neurons all NFIB 4781 7785 0.72 1.87e-19
104 29 In9 Inhibitory neurons all MAST4 375449 19037 0.77 2.74e-19
104 29 In9 Inhibitory neurons all CPLX1 10815 2309 0.96 9.07e-19
104 29 In9 Inhibitory neurons all FGF13 2258 3670 0.73 1.99e-17
104 29 In9 Inhibitory neurons all ADAMTS17 170691 17109 1.13 5.39e-17
104 29 In9 Inhibitory neurons all ASAP1 50807 2720 0.94 8.49e-17
104 29 In9 Inhibitory neurons all ADCY1 107 232 0.9 1.06e-16
104 29 In9 Inhibitory neurons all SPOCK1 6695 11251 0.57 3.53e-16
104 29 In9 Inhibitory neurons all LUZP2 338645 23206 0.6 9.73e-16
104 29 In9 Inhibitory neurons all XKR6 286046 27806 0.86 2.41e-15
104 29 In9 Inhibitory neurons all SEPTIN11 55752 25589 1.19 4.4e-15
104 29 In9 Inhibitory neurons all LMO4 8543 6644 1.43 4.77e-15
104 29 In9 Inhibitory neurons all MTUS1 57509 29789 1.29 8.1e-15
104 29 In9 Inhibitory neurons all ZDHHC14 79683 20341 0.98 1.05e-14
104 29 In9 Inhibitory neurons all HS6ST2 90161 19133 1.64 1.1e-14
104 29 In9 Inhibitory neurons all TEAD1 7003 11714 1.33 2.41e-14
104 29 In9 Inhibitory neurons all SCG2 7857 10575 0.97 1.2e-13
104 29 In9 Inhibitory neurons all MCC 4163 6935 1.33 1.76e-13
104 29 In9 Inhibitory neurons all FSTL4 23105 21389 1.49 3.89e-13
104 29 In9 Inhibitory neurons all SPIDR 23514 28971 0.62 4.43e-13
104 29 In9 Inhibitory neurons all FAM78B 149297 13495 1.16 6.12e-13
104 29 In9 Inhibitory neurons all BTG1 694 1130 1.44 9.84e-13
104 29 In9 Inhibitory neurons all MGAT5 4249 7049 1.05 1.03e-12
104 29 In9 Inhibitory neurons all SUPT3H 8464 11466 0.65 1.5e-12
104 29 In9 Inhibitory neurons all NCALD 83988 7655 0.68 2.27e-12
104 29 In9 Inhibitory neurons all PARM1 25849 24536 1.06 9.45e-12
104 29 In9 Inhibitory neurons all ALCAM 214 400 0.61 9.69e-12
104 29 In9 Inhibitory neurons all SYT17 51760 24119 1.18 1.11e-11
104 29 In9 Inhibitory neurons all NSG2 51617 24955 0.8 1.51e-11
104 29 In9 Inhibitory neurons all SYT14 255928 23143 0.83 1.76e-11
104 29 In9 Inhibitory neurons all AJAP1 55966 30801 1.3 1.82e-11
104 29 In9 Inhibitory neurons all RHOBTB3 22836 18757 1.25 3.72e-11
104 29 In9 Inhibitory neurons all FGD4 121512 19125 1.28 3.74e-11
104 29 In9 Inhibitory neurons all TMEM132B 114795 29397 0.57 3.85e-11
104 29 In9 Inhibitory neurons all CLSTN2 64084 17448 0.96 4.3e-11
104 29 In9 Inhibitory neurons all DIP2C 22982 29150 0.59 1.23e-10
104 29 In9 Inhibitory neurons all SUSD4 55061 25470 0.89 3.78e-10
104 29 In9 Inhibitory neurons all SLC6A1 6529 11042 0.58 3.97e-10
104 29 In9 Inhibitory neurons all EPHA5 2044 3389 0.99 4.2e-10
104 29 In9 Inhibitory neurons all PHACTR1 221692 20990 0.53 4.65e-10
104 29 In9 Inhibitory neurons all MED12L 116931 16050 1.17 5.39e-10
104 29 In9 Inhibitory neurons all SLC24A3 57419 10977 0.53 5.53e-10
104 29 In9 Inhibitory neurons all CPSF6 11052 13871 1.07 6.34e-10
104 29 In9 Inhibitory neurons all PPM1E 22843 19322 0.62 6.56e-10
104 29 In9 Inhibitory neurons all AK5 26289 365 0.62 9.4e-10
104 29 In9 Inhibitory neurons all HUNK 30811 13326 1.21 1.1e-09
104 29 In9 Inhibitory neurons all KIAA0319 9856 21580 0.95 1.42e-09
104 29 In9 Inhibitory neurons all RBMS1 5937 9907 1.08 1.69e-09
104 29 In9 Inhibitory neurons all CAMK4 814 1464 0.76 1.87e-09
104 29 In9 Inhibitory neurons all RPS6KA5 9252 10434 1.06 2.02e-09
104 29 In9 Inhibitory neurons all LHX6 26468 21735 0.87 2.48e-09
104 29 In9 Inhibitory neurons all MICAL2 9645 24693 1 2.76e-09
104 29 In9 Inhibitory neurons all RALGPS2 55103 30279 1.13 3.32e-09
104 29 In9 Inhibitory neurons all DENND2A 27147 22212 1.19 4.98e-09
104 29 In9 Inhibitory neurons all SCN1A 6323 10585 0.52 1.12e-08
104 29 In9 Inhibitory neurons all MAP7 9053 6869 0.55 1.22e-08
104 29 In9 Inhibitory neurons all EPB41 2035 3377 1.05 1.29e-08
104 29 In9 Inhibitory neurons all DOCK9 23348 14132 0.76 1.3e-08
104 29 In9 Inhibitory neurons all FAM110B 90362 28587 0.79 1.55e-08
104 29 In9 Inhibitory neurons all UBE2E2 7325 12478 0.58 1.89e-08
104 29 In9 Inhibitory neurons all SLC4A4 8671 11030 1.05 2.13e-08
104 29 In9 Inhibitory neurons all CDC5L 988 1743 1.21 2.41e-08
104 29 In9 Inhibitory neurons all AKAP12 9590 370 1.05 2.59e-08
104 29 In9 Inhibitory neurons all MCTP1 79772 26183 0.5 3.2e-08
104 29 In9 Inhibitory neurons all PKP4 8502 9026 0.57 4.8e-08
104 29 In9 Inhibitory neurons all ANKS1A 23294 20961 0.83 4.83e-08
104 29 In9 Inhibitory neurons all CTTNBP2 83992 15679 0.76 5.39e-08
104 29 In9 Inhibitory neurons all STMN4 81551 16078 1.08 1.44e-07
104 29 In9 Inhibitory neurons all DLGAP4 22839 24476 0.81 2.14e-07
104 29 In9 Inhibitory neurons all MB21D2 151963 30438 1.07 2.19e-07
104 29 In9 Inhibitory neurons all FMN1 342184 3768 0.63 4.71e-07
104 29 In9 Inhibitory neurons all R3HDM1 23518 9757 0.53 5.78e-07
104 29 In9 Inhibitory neurons all LIN7A 8825 17787 1.03 9.03e-07
104 29 In9 Inhibitory neurons all PPARGC1A 10891 9237 0.66 1.14e-06
104 29 In9 Inhibitory neurons all STMN2 11075 10577 0.67 1.18e-06
104 29 In9 Inhibitory neurons all UBAC2 337867 20486 1.13 1.66e-06
104 29 In9 Inhibitory neurons all GALNTL6 442117 33844 0.58 2.85e-06
104 29 In9 Inhibitory neurons all GTF2IRD1 9569 4661 0.87 2.96e-06
104 29 In9 Inhibitory neurons all NAPEPLD 222236 21683 0.99 4.08e-06
104 29 In9 Inhibitory neurons all UBR1 197131 16808 0.72 4.54e-06
104 29 In9 Inhibitory neurons all TLN2 83660 15447 0.59 4.76e-06
104 29 In9 Inhibitory neurons all NOL4 8715 7870 0.6 4.8e-06
104 29 In9 Inhibitory neurons all NLGN4X 57502 14287 0.53 7.73e-06
104 29 In9 Inhibitory neurons all LDLRAD4 753 1224 0.51 8.72e-06
104 29 In9 Inhibitory neurons all PHF20L1 51105 24280 0.68 9.37e-06
104 29 In9 Inhibitory neurons all ELMOD1 55531 25334 0.78 1.05e-05
104 29 In9 Inhibitory neurons all SEC14L1 6397 10698 0.9 1.05e-05
104 29 In9 Inhibitory neurons all STXBP6 29091 19666 0.61 1.3e-05
104 29 In9 Inhibitory neurons all VGLL4 9686 28966 0.76 1.34e-05
104 29 In9 Inhibitory neurons all ATP2B2 491 815 0.54 1.42e-05
104 29 In9 Inhibitory neurons all SLC7A8 23428 11066 1.08 1.42e-05
104 29 In9 Inhibitory neurons all KIAA1211 57482 29219 0.51 1.69e-05
104 29 In9 Inhibitory neurons all SIRPA 140885 9662 0.96 2.55e-05
104 29 In9 Inhibitory neurons all CAMK2D 817 1462 0.64 2.56e-05
104 29 In9 Inhibitory neurons all BRINP1 1620 2687 0.82 2.9e-05
104 29 In9 Inhibitory neurons all IQSEC3 440073 29193 0.84 4.03e-05
104 29 In9 Inhibitory neurons all DLC1 10395 2897 0.65 4.23e-05
104 29 In9 Inhibitory neurons all LPP 4026 6679 0.67 8.21e-05
104 29 In9 Inhibitory neurons all RUNX2 860 10472 0.9 9.75e-05
104 29 In9 Inhibitory neurons all FAM135A 57579 21084 0.73 0.000114735394424
104 29 In9 Inhibitory neurons all GAP43 2596 4140 0.56 0.000144500826514
104 29 In9 Inhibitory neurons all SRRM3 222183 26729 0.51 0.000171768784835
104 29 In9 Inhibitory neurons all NYAP2 57624 29291 0.58 0.000225506892099
104 29 In9 Inhibitory neurons all BEND6 221336 20871 0.75 0.000255825910179
104 29 In9 Inhibitory neurons all MBNL2 10150 16746 0.9 0.000270055101424
104 29 In9 Inhibitory neurons all CCDC91 55297 24855 0.51 0.000283580912154
104 29 In9 Inhibitory neurons all GUCY1A2 2977 4684 0.73 0.00028745254684
104 29 In9 Inhibitory neurons all CLEC16A 23274 29013 0.78 0.000295265752218
104 29 In9 Inhibitory neurons all PRICKLE2 166336 20340 0.51 0.000392864498042
104 29 In9 Inhibitory neurons all ADAM23 8745 202 0.68 0.000448013079576
104 29 In9 Inhibitory neurons all EPB41L3 23136 3380 0.52 0.000450817967436
104 29 In9 Inhibitory neurons all USP39 10713 20071 0.72 0.000485506540354
104 29 In9 Inhibitory neurons all MSI2 124540 18585 0.51 0.000489192514976
104 29 In9 Inhibitory neurons all ITSN1 6453 6183 0.51 0.000810601557284
104 29 In9 Inhibitory neurons all GALNT7 51809 4129 0.88 0.000847004851929
104 29 In9 Inhibitory neurons all SLC8A3 6547 11070 0.65 0.001009357874664
104 29 In9 Inhibitory neurons all SPECC1 92521 30615 0.64 0.001114226340743
104 29 In9 Inhibitory neurons all ME3 10873 6985 0.59 0.001233177427612
104 29 In9 Inhibitory neurons all GPR176 11245 32370 0.82 0.001419706063746
104 29 In9 Inhibitory neurons all PPP2R5E 5529 9313 0.55 0.002075009872091
104 29 In9 Inhibitory neurons all TRIM44 54765 19016 0.54 0.002177119070076
104 29 In9 Inhibitory neurons all BICDL1 92558 28095 0.8 0.002542539244543
104 29 In9 Inhibitory neurons all PRICKLE1 144165 17019 0.61 0.002572625706373
104 29 In9 Inhibitory neurons all KIAA1107 23285 29192 0.5 0.002735551991146
104 29 In9 Inhibitory neurons all OLFM1 10439 17187 0.52 0.004698994632816
104 29 In9 Inhibitory neurons all ANO10 55129 25519 0.62 0.006074057528826
104 29 In9 Inhibitory neurons all OSBPL3 26031 16370 0.51 0.006130764741752
104 29 In9 Inhibitory neurons all KIAA0232 9778 28992 0.59 0.006741383206927
104 29 In9 Inhibitory neurons all CFAP161 161502 26782 0.89 0.006874310379545
104 29 In9 Inhibitory neurons all TMEM131 23505 30366 0.82 0.009720011650457