Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:162
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 26 In6 Inhibitory neurons all ZBTB20 26137 13503 3.51 5.85e-293
104 26 In6 Inhibitory neurons all ADARB2 105 227 1.37 1.62e-138
104 26 In6 Inhibitory neurons all NRXN1 9378 8008 1.28 2.27e-137
104 26 In6 Inhibitory neurons all GRM7 2917 4599 1.81 1.65e-136
104 26 In6 Inhibitory neurons all GALNTL6 442117 33844 1.54 4.01e-124
104 26 In6 Inhibitory neurons all TSHZ2 128553 13010 2.76 6.09e-106
104 26 In6 Inhibitory neurons all DSCAM 1826 3039 1.57 6.09e-106
104 26 In6 Inhibitory neurons all VIP 7432 12693 2.27 2.4e-104
104 26 In6 Inhibitory neurons all RGS12 6002 9994 1.56 1.12e-101
104 26 In6 Inhibitory neurons all CSMD1 64478 14026 0.94 9.2e-97
104 26 In6 Inhibitory neurons all GALNT13 114805 23242 1.86 3.81e-90
104 26 In6 Inhibitory neurons all TAC3 6866 11521 2.2 1.36e-89
104 26 In6 Inhibitory neurons all C8orf34 116328 30905 1.8 6.39e-85
104 26 In6 Inhibitory neurons all SDK1 221935 19307 1.56 2.08e-78
104 26 In6 Inhibitory neurons all L3MBTL4 91133 26677 1.53 3.76e-78
104 26 In6 Inhibitory neurons all FIGN 55137 13285 2.27 9.05e-78
104 26 In6 Inhibitory neurons all CXCL14 9547 10640 1.32 2.66e-76
104 26 In6 Inhibitory neurons all CHRM3 1131 1952 1.16 1.22e-64
104 26 In6 Inhibitory neurons all PLD5 200150 26879 1.41 1.11e-59
104 26 In6 Inhibitory neurons all SNTG1 54212 13740 0.83 2.93e-59
104 26 In6 Inhibitory neurons all PARD3 56288 16051 1.87 3.09e-58
104 26 In6 Inhibitory neurons all PROX1 5629 9459 1.76 1.79e-56
104 26 In6 Inhibitory neurons all THSD7B 80731 29348 2.46 8.55e-55
104 26 In6 Inhibitory neurons all LRP1B 53353 6693 0.78 1.13e-51
104 26 In6 Inhibitory neurons all NCAM2 4685 7657 1.07 4.01e-51
104 26 In6 Inhibitory neurons all MAPK4 5596 6878 1.77 1.06e-50
104 26 In6 Inhibitory neurons all SORCS3 22986 16699 1.7 1.24e-47
104 26 In6 Inhibitory neurons all ARHGAP18 93663 21035 2.25 4.21e-47
104 26 In6 Inhibitory neurons all SLC24A3 57419 10977 1.39 1.36e-46
104 26 In6 Inhibitory neurons all GRID2 2895 4576 1.02 4.52e-46
104 26 In6 Inhibitory neurons all KCNH7 90134 18863 1.21 5.92e-43
104 26 In6 Inhibitory neurons all DOCK10 55619 23479 1.22 1.98e-42
104 26 In6 Inhibitory neurons all NKAIN3 286183 26829 1.57 2.89e-41
104 26 In6 Inhibitory neurons all KCNT2 343450 18866 1.5 4.87e-41
104 26 In6 Inhibitory neurons all NEDD4L 23327 7728 1.27 8.4e-41
104 26 In6 Inhibitory neurons all SEMA5A 9037 10736 2.22 5.41e-40
104 26 In6 Inhibitory neurons all AK5 26289 365 1.5 4.02e-39
104 26 In6 Inhibitory neurons all CALB2 794 1435 1.32 4.09e-38
104 26 In6 Inhibitory neurons all MAGI3 260425 29647 1.43 1.48e-37
104 26 In6 Inhibitory neurons all SYNPR 132204 16507 0.82 5.89e-37
104 26 In6 Inhibitory neurons all MTUS2 23281 20595 0.93 6.92e-36
104 26 In6 Inhibitory neurons all NBEA 26960 7648 0.83 5.69e-35
104 26 In6 Inhibitory neurons all SEZ6L 23544 10763 1.16 1.15e-34
104 26 In6 Inhibitory neurons all VWC2L 402117 37203 1.55 2.05e-34
104 26 In6 Inhibitory neurons all CDH20 28316 1760 1.61 3.62e-34
104 26 In6 Inhibitory neurons all ENC1 8507 3345 1.79 3.86e-34
104 26 In6 Inhibitory neurons all NFIB 4781 7785 1.05 3.83e-33
104 26 In6 Inhibitory neurons all LRFN2 57497 21226 1.36 4.37e-33
104 26 In6 Inhibitory neurons all ERBB4 2066 3432 0.5 9.09e-33
104 26 In6 Inhibitory neurons all CMTM8 152189 19179 2.04 4.8e-32
104 26 In6 Inhibitory neurons all SOX5 6660 11201 1.52 8.74e-30
104 26 In6 Inhibitory neurons all ANKS1B 56899 24600 0.52 5.39e-29
104 26 In6 Inhibitory neurons all FRMPD4 9758 29007 0.8 6.84e-29
104 26 In6 Inhibitory neurons all ROBO1 6091 10249 0.79 8.69e-28
104 26 In6 Inhibitory neurons all CNTNAP4 85445 18747 1.11 1.63e-27
104 26 In6 Inhibitory neurons all NFIX 4784 7788 1.26 4.22e-27
104 26 In6 Inhibitory neurons all FRMD4A 55691 25491 0.57 1.06e-26
104 26 In6 Inhibitory neurons all EGFR 1956 3236 1.09 3.73e-26
104 26 In6 Inhibitory neurons all CHST11 50515 17422 1.38 6.96e-25
104 26 In6 Inhibitory neurons all SCG2 7857 10575 1.41 4.16e-24
104 26 In6 Inhibitory neurons all PDE4D 5144 8783 0.75 3.25e-23
104 26 In6 Inhibitory neurons all PRKCA 5578 9393 1.01 1.22e-22
104 26 In6 Inhibitory neurons all NCAM1 4684 7656 0.67 9.86e-22
104 26 In6 Inhibitory neurons all CACNA1E 777 1392 1.15 8.34e-21
104 26 In6 Inhibitory neurons all CACNA2D3 55799 15460 0.77 8.76e-21
104 26 In6 Inhibitory neurons all KALRN 8997 4814 0.83 2.71e-20
104 26 In6 Inhibitory neurons all GABRB1 2560 4081 0.75 4.04e-20
104 26 In6 Inhibitory neurons all CLVS1 157807 23139 1.14 4.45e-20
104 26 In6 Inhibitory neurons all MARCHF1 55016 26077 1.3 5.31e-20
104 26 In6 Inhibitory neurons all NPAS2 4862 7895 1.35 5.35e-20
104 26 In6 Inhibitory neurons all PRR16 51334 29654 1.5 6.86e-20
104 26 In6 Inhibitory neurons all PEX5L 51555 30024 1.17 4.24e-19
104 26 In6 Inhibitory neurons all CNTN4 152330 2174 0.73 3.09e-18
104 26 In6 Inhibitory neurons all COBL 23242 22199 1.09 4.02e-18
104 26 In6 Inhibitory neurons all NECAB1 64168 20983 1.36 1.03e-17
104 26 In6 Inhibitory neurons all TNKS 8658 11941 0.9 1.3e-17
104 26 In6 Inhibitory neurons all ARID1B 57492 18040 0.77 4.35e-17
104 26 In6 Inhibitory neurons all MYRIP 25924 19156 0.82 5.92e-17
104 26 In6 Inhibitory neurons all NETO2 81831 14644 1.29 2.78e-16
104 26 In6 Inhibitory neurons all BMPER 168667 24154 1.44 4.87e-16
104 26 In6 Inhibitory neurons all ZBTB16 7704 12930 1.05 5.29e-16
104 26 In6 Inhibitory neurons all STARD13 90627 19164 1.28 7.66e-16
104 26 In6 Inhibitory neurons all CDH10 1008 1749 0.88 2.1e-15
104 26 In6 Inhibitory neurons all ZNF292 23036 18410 0.84 2.14e-15
104 26 In6 Inhibitory neurons all EPHA5 2044 3389 1.19 3.21e-15
104 26 In6 Inhibitory neurons all RGS7 6000 10003 0.51 3.51e-15
104 26 In6 Inhibitory neurons all CACNB2 783 1402 0.69 5.3e-15
104 26 In6 Inhibitory neurons all KCNB2 9312 6232 0.86 3.45e-14
104 26 In6 Inhibitory neurons all SORCS1 114815 16697 1.23 6.14e-14
104 26 In6 Inhibitory neurons all PDE10A 10846 8772 1.08 6.39e-14
104 26 In6 Inhibitory neurons all PCSK2 5126 8744 0.85 6.93e-14
104 26 In6 Inhibitory neurons all FOXN3 1112 1928 0.94 3.32e-13
104 26 In6 Inhibitory neurons all FLRT2 23768 3761 0.88 1.18e-12
104 26 In6 Inhibitory neurons all THRB 7068 11799 0.66 3.88e-12
104 26 In6 Inhibitory neurons all FAT3 120114 23112 1.26 4.03e-12
104 26 In6 Inhibitory neurons all SOBP 55084 29256 0.81 5.23e-12
104 26 In6 Inhibitory neurons all B3GAT1 27087 921 1.17 8.64e-12
104 26 In6 Inhibitory neurons all ARPP21 10777 16968 1.12 9.44e-12
104 26 In6 Inhibitory neurons all PTPRE 5791 9669 1 1.47e-11
104 26 In6 Inhibitory neurons all PCDH11X 27328 8656 0.75 1.76e-11
104 26 In6 Inhibitory neurons all PDZD2 23037 18486 1.07 1.81e-11
104 26 In6 Inhibitory neurons all DLX1 1745 2914 1.21 2.08e-11
104 26 In6 Inhibitory neurons all NTRK3 4916 8033 0.63 2.35e-11
104 26 In6 Inhibitory neurons all PLEKHA5 54477 30036 0.6 8.19e-11
104 26 In6 Inhibitory neurons all LUZP2 338645 23206 1.05 8.38e-11
104 26 In6 Inhibitory neurons all NR3C2 4306 7979 0.73 1.86e-10
104 26 In6 Inhibitory neurons all SLC44A5 204962 28524 0.58 3.23e-10
104 26 In6 Inhibitory neurons all RERG 85004 15980 0.89 3.54e-10
104 26 In6 Inhibitory neurons all SLITRK4 139065 23502 1.25 6.97e-10
104 26 In6 Inhibitory neurons all TTC28 23331 29179 0.69 7.87e-10
104 26 In6 Inhibitory neurons all CNR1 1268 2159 0.72 1.37e-09
104 26 In6 Inhibitory neurons all PLCL2 23228 9064 1.04 2.67e-09
104 26 In6 Inhibitory neurons all GNG2 54331 4404 1.01 3.28e-09
104 26 In6 Inhibitory neurons all TTC39C 125488 26595 0.99 4.53e-09
104 26 In6 Inhibitory neurons all PLXNA4 91584 9102 0.56 9.44e-09
104 26 In6 Inhibitory neurons all NELL2 4753 7751 0.91 9.44e-09
104 26 In6 Inhibitory neurons all REEP1 65055 25786 0.86 1.14e-08
104 26 In6 Inhibitory neurons all CDK8 1024 1779 0.98 1.51e-08
104 26 In6 Inhibitory neurons all CSRNP3 80034 30729 0.66 2.04e-08
104 26 In6 Inhibitory neurons all ANKRD28 23243 29024 0.85 2.79e-08
104 26 In6 Inhibitory neurons all AKT3 10000 393 0.56 6.59e-08
104 26 In6 Inhibitory neurons all SCN3A 6328 10590 0.77 1.47e-07
104 26 In6 Inhibitory neurons all AP1S2 8905 560 0.89 2.18e-07
104 26 In6 Inhibitory neurons all TMEM232 642987 37270 0.75 2.63e-07
104 26 In6 Inhibitory neurons all ANKRD30BL 554226 35167 0.74 3.49e-07
104 26 In6 Inhibitory neurons all REV3L 5980 9968 0.56 6.14e-07
104 26 In6 Inhibitory neurons all B4GALT6 9331 929 0.92 2.28e-06
104 26 In6 Inhibitory neurons all NPTXR 23467 7954 0.91 4.73e-06
104 26 In6 Inhibitory neurons all NAP1L3 4675 7639 0.83 7.23e-06
104 26 In6 Inhibitory neurons all BAZ2B 29994 963 0.87 7.78e-06
104 26 In6 Inhibitory neurons all PDE1C 5137 8776 0.65 1.29e-05
104 26 In6 Inhibitory neurons all POU2F1 5451 9212 0.78 1.3e-05
104 26 In6 Inhibitory neurons all PIK3R1 5295 8979 0.85 1.34e-05
104 26 In6 Inhibitory neurons all BTG1 694 1130 1.09 1.76e-05
104 26 In6 Inhibitory neurons all CHSY3 337876 24293 0.72 2.05e-05
104 26 In6 Inhibitory neurons all SHTN1 57698 29319 0.54 4.41e-05
104 26 In6 Inhibitory neurons all PLPPR1 54886 25993 0.78 4.73e-05
104 26 In6 Inhibitory neurons all TRMT9B 57604 26725 0.72 4.86e-05
104 26 In6 Inhibitory neurons all OSBPL1A 114876 16398 0.62 5.61e-05
104 26 In6 Inhibitory neurons all CALN1 83698 13248 0.52 5.72e-05
104 26 In6 Inhibitory neurons all PID1 55022 26084 0.7 7.65e-05
104 26 In6 Inhibitory neurons all PITPNC1 26207 21045 0.56 0.000103540278071
104 26 In6 Inhibitory neurons all GALNT17 64409 16347 0.52 0.000152421696969
104 26 In6 Inhibitory neurons all HYDIN 54768 19368 0.83 0.00019261083261
104 26 In6 Inhibitory neurons all PRKCB 5579 9395 0.6 0.000258843041768
104 26 In6 Inhibitory neurons all ZNF804B 219578 21958 0.71 0.000282067631537
104 26 In6 Inhibitory neurons all PHYHIPL 84457 29378 0.74 0.000294081630454
104 26 In6 Inhibitory neurons all NR2F1 7025 7975 0.75 0.000375196543195
104 26 In6 Inhibitory neurons all ARHGEF3 50650 683 0.76 0.000412030344848
104 26 In6 Inhibitory neurons all ABLIM1 3983 78 0.71 0.000441925523549
104 26 In6 Inhibitory neurons all PLPPR5 163404 31703 0.72 0.000629810450552
104 26 In6 Inhibitory neurons all PARP8 79668 26124 0.75 0.001106834929988
104 26 In6 Inhibitory neurons all ERO1B 56605 14355 0.79 0.001992023100653
104 26 In6 Inhibitory neurons all NR3C1 2908 7978 0.87 0.003024813904618
104 26 In6 Inhibitory neurons all CIT 11113 1985 0.74 0.003855164573121
104 26 In6 Inhibitory neurons all SORT1 6272 11186 0.88 0.003924443563809
104 26 In6 Inhibitory neurons all SRRM4 84530 29389 0.53 0.004262107104426
104 26 In6 Inhibitory neurons all TMTC2 160335 25440 0.66 0.004484724830935
104 26 In6 Inhibitory neurons all MAN1A2 10905 6822 0.57 0.004802063624462
104 26 In6 Inhibitory neurons all ABL2 27 77 0.71 0.005488112883118
104 26 In6 Inhibitory neurons all KLHL42 57542 29252 0.79 0.005495552658228
104 26 In6 Inhibitory neurons all EML6 400954 35412 0.63 0.006901165153634