Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:126
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 24 In4 Inhibitory neurons all CDH12 1010 1751 2.75 4.37E-258
104 24 In4 Inhibitory neurons all ROBO2 6092 10250 1.21 1.14E-149
104 24 In4 Inhibitory neurons all SLC27A6 28965 11000 3.69 8.67E-138
104 24 In4 Inhibitory neurons all GRIK1 2897 4579 1.42 5.27E-137
104 24 In4 Inhibitory neurons all SOX6 55553 16421 1.79 6.28E-137
104 24 In4 Inhibitory neurons all RBFOX1 54715 18222 0.85 1.86E-128
104 24 In4 Inhibitory neurons all KIAA1217 56243 25428 1.32 2.21E-121
104 24 In4 Inhibitory neurons all FBN2 2201 3604 3.09 2.98E-106
104 24 In4 Inhibitory neurons all SST 6750 11329 2.41 1.94E-104
104 24 In4 Inhibitory neurons all SGCZ 137868 14075 1.61 2.98E-98
104 24 In4 Inhibitory neurons all DMD 1756 2928 1.4 1.54E-96
104 24 In4 Inhibitory neurons all XKR4 114786 29394 1.17 1.19E-94
104 24 In4 Inhibitory neurons all BCL11A 53335 13221 1.99 1.34E-94
104 24 In4 Inhibitory neurons all LRP1B 53353 6693 0.93 2.62E-92
104 24 In4 Inhibitory neurons all SLC8A1 6546 11068 1.29 2.77E-88
104 24 In4 Inhibitory neurons all ADAMTS19 171019 17111 2.17 7.32E-88
104 24 In4 Inhibitory neurons all NXPH1 30010 20693 1.14 1.32E-87
104 24 In4 Inhibitory neurons all PCSK5 5125 8747 2.31 6.21E-87
104 24 In4 Inhibitory neurons all MAN1A1 4121 6821 2.58 1.37E-77
104 24 In4 Inhibitory neurons all DLGAP1 9229 2905 0.64 1.02E-74
104 24 In4 Inhibitory neurons all CUX2 23316 19347 2.02 4.18E-74
104 24 In4 Inhibitory neurons all KIF26B 55083 25484 1.74 8.93E-73
104 24 In4 Inhibitory neurons all KIRREL3 84623 23204 1.38 6.08E-72
104 24 In4 Inhibitory neurons all PDE1A 5136 8774 2.21 2.23E-70
104 24 In4 Inhibitory neurons all TMEFF2 23671 11867 1.44 1.33E-62
104 24 In4 Inhibitory neurons all THSD7A 221981 22207 1.17 1.8E-61
104 24 In4 Inhibitory neurons all SPOCK3 50859 13565 0.93 4.18E-55
104 24 In4 Inhibitory neurons all CDH8 1006 1767 1.43 7.41E-51
104 24 In4 Inhibitory neurons all NXPH2 11249 8076 2.32 1.28E-47
104 24 In4 Inhibitory neurons all GRIK3 2899 4581 1.4 2.07E-44
104 24 In4 Inhibitory neurons all RIMS2 9699 17283 0.78 2.23E-43
104 24 In4 Inhibitory neurons all COL25A1 84570 18603 1.84 4.6E-43
104 24 In4 Inhibitory neurons all STXBP6 29091 19666 1.38 1.95E-41
104 24 In4 Inhibitory neurons all FSTL5 56884 21386 0.86 8.4E-36
104 24 In4 Inhibitory neurons all DAB1 1600 2661 0.72 1.01E-35
104 24 In4 Inhibitory neurons all CDH9 1007 1768 1.02 1.01E-35
104 24 In4 Inhibitory neurons all PCDH15 65217 14674 1.07 1.5E-35
104 24 In4 Inhibitory neurons all NEGR1 257194 17302 0.82 1.74E-35
104 24 In4 Inhibitory neurons all RPS6KA2 6196 10431 0.88 4.47E-34
104 24 In4 Inhibitory neurons all PACRG 135138 19152 1.37 5.51E-34
104 24 In4 Inhibitory neurons all NCAM2 4685 7657 1.13 2.27E-33
104 24 In4 Inhibitory neurons all ZNF385D 79750 26191 0.62 4.73E-31
104 24 In4 Inhibitory neurons all GRID2 2895 4576 0.92 5.99E-31
104 24 In4 Inhibitory neurons all PTPRT 11122 9682 1.24 1.99E-30
104 24 In4 Inhibitory neurons all TIAM1 7074 11805 0.88 1.22E-29
104 24 In4 Inhibitory neurons all RASGRF2 5924 9876 1.11 1.61E-29
104 24 In4 Inhibitory neurons all MEF2C 4208 6996 0.62 1.7E-29
104 24 In4 Inhibitory neurons all PCLO 27445 13406 0.76 4.57E-28
104 24 In4 Inhibitory neurons all RUNX1T1 862 1535 1.03 6.6E-28
104 24 In4 Inhibitory neurons all ANTXR1 84168 21014 1.94 1.61E-27
104 24 In4 Inhibitory neurons all MACROD2 140733 16126 0.67 3.75E-27
104 24 In4 Inhibitory neurons all EPB41L2 2037 3379 1.33 1.7E-26
104 24 In4 Inhibitory neurons all SORBS2 8470 24098 0.98 2.32E-26
104 24 In4 Inhibitory neurons all ROBO1 6091 10249 0.61 3.46E-24
104 24 In4 Inhibitory neurons all AUTS2 26053 14262 0.63 7.03E-24
104 24 In4 Inhibitory neurons all IQCJ-SCHIP1 100505385 38842 1.12 1.44E-23
104 24 In4 Inhibitory neurons all ZBTB20 26137 13503 0.98 1.45E-23
104 24 In4 Inhibitory neurons all DGKG 1608 2853 1.77 1.97E-23
104 24 In4 Inhibitory neurons all PLCH1 23007 29185 1.29 3.42E-23
104 24 In4 Inhibitory neurons all PTPRM 5797 9675 0.68 5.93E-23
104 24 In4 Inhibitory neurons all PCDH7 5099 8659 0.87 9.96E-23
104 24 In4 Inhibitory neurons all SLC24A3 57419 10977 1.13 1.02E-22
104 24 In4 Inhibitory neurons all FAM135B 51059 28029 1.28 3.39E-21
104 24 In4 Inhibitory neurons all GRIA3 2892 4573 0.83 3.67E-20
104 24 In4 Inhibitory neurons all RBMS3 27303 13427 0.69 3.26E-18
104 24 In4 Inhibitory neurons all ELL2 22936 17064 1.75 1.84E-17
104 24 In4 Inhibitory neurons all SMARCA2 6595 11098 1 9.26E-17
104 24 In4 Inhibitory neurons all NKAIN2 154215 16443 1.34 2.35E-16
104 24 In4 Inhibitory neurons all CACNA1A 773 1388 0.59 2.59E-16
104 24 In4 Inhibitory neurons all CDH7 1005 1766 1.33 6.77E-16
104 24 In4 Inhibitory neurons all AAK1 22848 19679 0.72 1.78E-15
104 24 In4 Inhibitory neurons all CACNG3 10368 1407 1.08 7.49E-15
104 24 In4 Inhibitory neurons all TSHZ3 57616 30700 1.13 3.97E-14
104 24 In4 Inhibitory neurons all TOX2 84969 16095 1.18 8.51E-14
104 24 In4 Inhibitory neurons all TENM1 10178 8117 0.77 9.64E-14
104 24 In4 Inhibitory neurons all NETO2 81831 14644 1.13 1.3E-13
104 24 In4 Inhibitory neurons all KLF12 11278 6346 0.62 2.03E-13
104 24 In4 Inhibitory neurons all MYRIP 25924 19156 0.64 2.2E-13
104 24 In4 Inhibitory neurons all MAP3K5 4217 6857 1.27 1.55E-12
104 24 In4 Inhibitory neurons all DNM3 26052 29125 0.57 1.69E-11
104 24 In4 Inhibitory neurons all MAPK10 5602 6872 0.5 2.02E-11
104 24 In4 Inhibitory neurons all PDE1C 5137 8776 0.83 4.84E-11
104 24 In4 Inhibitory neurons all PIP5K1B 8395 8995 0.89 7.11E-10
104 24 In4 Inhibitory neurons all LHFPL3 375612 6589 0.74 7.86E-10
104 24 In4 Inhibitory neurons all TRIM9 114088 16288 0.61 1.53E-9
104 24 In4 Inhibitory neurons all CRB1 23418 2343 1.06 2.7E-9
104 24 In4 Inhibitory neurons all LINGO2 158038 21207 0.55 3.43E-9
104 24 In4 Inhibitory neurons all ST6GALNAC3 256435 19343 1.3 8.94E-9
104 24 In4 Inhibitory neurons all CHN1 1123 1943 0.7 9.85E-9
104 24 In4 Inhibitory neurons all EPHB6 2051 3396 1.01 1.47E-8
104 24 In4 Inhibitory neurons all SLC44A5 204962 28524 0.5 1.58E-8
104 24 In4 Inhibitory neurons all LIMCH1 22998 29191 0.5 1.84E-8
104 24 In4 Inhibitory neurons all ADCY2 108 233 0.53 2.42E-8
104 24 In4 Inhibitory neurons all GPC6 10082 4454 0.57 4.73E-8
104 24 In4 Inhibitory neurons all CDH10 1008 1749 0.73 1.4E-7
104 24 In4 Inhibitory neurons all PTPRO 5800 9678 0.91 1.71E-7
104 24 In4 Inhibitory neurons all LRRTM3 347731 19410 0.6 2.6E-7
104 24 In4 Inhibitory neurons all HCN1 348980 4845 0.52 3.79E-7
104 24 In4 Inhibitory neurons all GARNL3 84253 25425 0.64 4.47E-7
104 24 In4 Inhibitory neurons all ADGRL2 23266 18582 0.52 1.17E-6
104 24 In4 Inhibitory neurons all MSRA 4482 7377 0.56 2.04E-6
104 24 In4 Inhibitory neurons all ITGA9 3680 6145 1.11 6.13E-6
104 24 In4 Inhibitory neurons all SHTN1 57698 29319 0.64 7.77E-6
104 24 In4 Inhibitory neurons all SIDT1 54847 25967 0.92 9.47E-6
104 24 In4 Inhibitory neurons all SCAI 286205 26709 0.88 2.38E-5
104 24 In4 Inhibitory neurons all WLS 79971 30238 0.86 3.64E-5
104 24 In4 Inhibitory neurons all NCOA2 10499 7669 0.64 4.35E-5
104 24 In4 Inhibitory neurons all DAPK1 1612 2674 0.75 7.95E-5
104 24 In4 Inhibitory neurons all VSNL1 7447 12722 0.53 0.000116036435704
104 24 In4 Inhibitory neurons all SCN3B 55800 20665 0.83 0.000295155573612
104 24 In4 Inhibitory neurons all MPDZ 8777 7208 0.53 0.000342076988294
104 24 In4 Inhibitory neurons all SHISA6 388336 34491 0.69 0.000389297618226
104 24 In4 Inhibitory neurons all KHDRBS3 10656 18117 0.8 0.000822810842151
104 24 In4 Inhibitory neurons all SFMBT2 57713 20256 0.82 0.001470030071411
104 24 In4 Inhibitory neurons all TUSC3 7991 30242 0.83 0.00147020131749
104 24 In4 Inhibitory neurons all FZD3 7976 4041 0.66 0.00147020131749
104 24 In4 Inhibitory neurons all SEPTIN11 55752 25589 0.73 0.001878213958663
104 24 In4 Inhibitory neurons all ITFG1 81533 30697 0.52 0.003042764990791
104 24 In4 Inhibitory neurons all CACNA1E 777 1392 0.52 0.003246620678795
104 24 In4 Inhibitory neurons all PTPRR 5801 9680 0.55 0.003378883312813
104 24 In4 Inhibitory neurons all LHX6 26468 21735 0.97 0.003860557229815
104 24 In4 Inhibitory neurons all NIN 51199 14906 0.9 0.004196289086061
104 24 In4 Inhibitory neurons all KIZ 55857 15865 0.72 0.005357792662406
104 24 In4 Inhibitory neurons all BCL11B 64919 13222 0.5 0.005520395898199
104 24 In4 Inhibitory neurons all C11orf58 10944 16990 0.85 0.006862355760013
104 24 In4 Inhibitory neurons all FARP1 10160 3591 0.6 0.009868504747909