Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:193
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 23 In3 Inhibitory neurons all CXCL14 9547 10640 3.26 0
104 23 In3 Inhibitory neurons all ADARB2 105 227 1.45 1.53e-228
104 23 In3 Inhibitory neurons all FSTL5 56884 21386 1.88 1.51e-224
104 23 In3 Inhibitory neurons all INPP4B 8821 6075 2.16 2.93e-205
104 23 In3 Inhibitory neurons all RELN 5649 9957 3.15 3.13e-201
104 23 In3 Inhibitory neurons all NCAM2 4685 7657 1.72 2.32e-192
104 23 In3 Inhibitory neurons all LINGO2 158038 21207 1.44 4.01e-169
104 23 In3 Inhibitory neurons all MAML3 55534 16272 2.59 2.08e-164
104 23 In3 Inhibitory neurons all CNTN5 53942 2175 1.14 2.45e-158
104 23 In3 Inhibitory neurons all CNR1 1268 2159 2.65 3.72e-158
104 23 In3 Inhibitory neurons all HS3ST5 222537 19419 2.92 8.76e-145
104 23 In3 Inhibitory neurons all NR2F2 7026 7976 2.23 1.49e-137
104 23 In3 Inhibitory neurons all GRIK2 2898 4580 0.98 8.04e-129
104 23 In3 Inhibitory neurons all CNTNAP4 85445 18747 1.69 2.78e-127
104 23 In3 Inhibitory neurons all RGS12 6002 9994 1.54 1.69e-125
104 23 In3 Inhibitory neurons all PRELID2 153768 28306 1.7 3.88e-123
104 23 In3 Inhibitory neurons all ADRA1A 148 277 1.95 4.29e-121
104 23 In3 Inhibitory neurons all PCSK2 5126 8744 1.7 6.45e-116
104 23 In3 Inhibitory neurons all CHRNA7 1139 1960 2.4 1.08e-115
104 23 In3 Inhibitory neurons all GRIK4 2900 4582 2.66 6.16e-115
104 23 In3 Inhibitory neurons all IL1RAPL2 26280 5997 1.96 2.55e-111
104 23 In3 Inhibitory neurons all EGFR 1956 3236 1.9 1.58e-108
104 23 In3 Inhibitory neurons all THSD7B 80731 29348 2.02 7.14e-102
104 23 In3 Inhibitory neurons all MAML2 84441 16259 2.57 1.74e-95
104 23 In3 Inhibitory neurons all MAGI3 260425 29647 1.74 5.2e-94
104 23 In3 Inhibitory neurons all DGKB 1607 2850 1.27 7.24e-90
104 23 In3 Inhibitory neurons all NRXN1 9378 8008 0.79 7.66e-90
104 23 In3 Inhibitory neurons all C8orf34 116328 30905 1.36 1.32e-88
104 23 In3 Inhibitory neurons all DOCK10 55619 23479 1.35 7.88e-83
104 23 In3 Inhibitory neurons all PRR16 51334 29654 1.61 3.02e-81
104 23 In3 Inhibitory neurons all DAB1 1600 2661 0.83 8.56e-78
104 23 In3 Inhibitory neurons all SIPA1L2 57568 23800 2.02 2.12e-73
104 23 In3 Inhibitory neurons all NPAS3 64067 19311 0.94 2.2e-73
104 23 In3 Inhibitory neurons all NPAS1 4861 7894 1.94 9.03e-73
104 23 In3 Inhibitory neurons all RP11-58C22.1 NULL 1.91 6.11e-72
104 23 In3 Inhibitory neurons all KCNT2 343450 18866 1.3 7.24e-71
104 23 In3 Inhibitory neurons all ARPP21 10777 16968 1.67 4.76e-68
104 23 In3 Inhibitory neurons all SORCS3 22986 16699 1.42 1.76e-67
104 23 In3 Inhibitory neurons all CHRM3 1131 1952 0.89 5.6e-67
104 23 In3 Inhibitory neurons all CSMD3 114788 19291 0.89 8.29e-62
104 23 In3 Inhibitory neurons all CHSY3 337876 24293 1.4 2.72e-61
104 23 In3 Inhibitory neurons all GALNTL6 442117 33844 0.7 1.21e-58
104 23 In3 Inhibitory neurons all SORCS1 114815 16697 1.78 1.31e-58
104 23 In3 Inhibitory neurons all CHL1 10752 1939 1.35 6.17e-58
104 23 In3 Inhibitory neurons all CHST11 50515 17422 1.47 1.04e-56
104 23 In3 Inhibitory neurons all PEX5L 51555 30024 1.26 4.07e-56
104 23 In3 Inhibitory neurons all DNAH14 127602 2945 1.9 5.23e-55
104 23 In3 Inhibitory neurons all ANKRD30B 374860 24165 2.07 6.93e-55
104 23 In3 Inhibitory neurons all HDAC9 9734 14065 1.09 3.76e-54
104 23 In3 Inhibitory neurons all NKAIN2 154215 16443 0.96 3.48e-53
104 23 In3 Inhibitory neurons all SYN3 8224 11496 1.05 6.17e-53
104 23 In3 Inhibitory neurons all SHISA9 729993 37231 1.03 6.47e-53
104 23 In3 Inhibitory neurons all RPH3A 22895 17056 1.35 1.22e-52
104 23 In3 Inhibitory neurons all GAS7 8522 4169 1.32 2.4e-51
104 23 In3 Inhibitory neurons all KCNQ5 56479 6299 0.81 9.88e-51
104 23 In3 Inhibitory neurons all HS6ST3 266722 19134 0.89 3.13e-49
104 23 In3 Inhibitory neurons all NRG1 3084 7997 1.27 4.31e-48
104 23 In3 Inhibitory neurons all MGAT4C 25834 30871 0.84 2.18e-46
104 23 In3 Inhibitory neurons all CCDC85A 114800 29400 1.27 3.71e-46
104 23 In3 Inhibitory neurons all CACNB2 783 1402 0.83 4.95e-46
104 23 In3 Inhibitory neurons all PROX1 5629 9459 1.3 2.48e-45
104 23 In3 Inhibitory neurons all COL21A1 81578 17025 1.63 6.18e-45
104 23 In3 Inhibitory neurons all SCLT1 132320 26406 1.37 5.02e-44
104 23 In3 Inhibitory neurons all PLD5 200150 26879 1 6.21e-44
104 23 In3 Inhibitory neurons all PID1 55022 26084 1.28 1.05e-43
104 23 In3 Inhibitory neurons all NFIB 4781 7785 0.84 1.1e-41
104 23 In3 Inhibitory neurons all CAMK4 814 1464 1.25 1.23e-41
104 23 In3 Inhibitory neurons all NYAP2 57624 29291 1.48 1.02e-40
104 23 In3 Inhibitory neurons all PHACTR1 221692 20990 0.77 2.16e-40
104 23 In3 Inhibitory neurons all ANKRD6 22881 17280 1.36 3.46e-40
104 23 In3 Inhibitory neurons all KIAA1958 158405 23427 1.44 9.25e-39
104 23 In3 Inhibitory neurons all PRKCB 5579 9395 1.21 2.49e-38
104 23 In3 Inhibitory neurons all CCK 885 1569 1.52 1.19e-37
104 23 In3 Inhibitory neurons all MSRA 4482 7377 0.87 1.21e-37
104 23 In3 Inhibitory neurons all CACNA2D1 781 1399 1.45 1.96e-37
104 23 In3 Inhibitory neurons all KALRN 8997 4814 0.9 2.54e-37
104 23 In3 Inhibitory neurons all FREM1 158326 23399 2.07 2.24e-36
104 23 In3 Inhibitory neurons all CACNA1B 774 1389 0.78 3.28e-36
104 23 In3 Inhibitory neurons all ZBTB16 7704 12930 1.08 3.37e-36
104 23 In3 Inhibitory neurons all PDE7B 27115 8792 1.3 9.58e-36
104 23 In3 Inhibitory neurons all DNER 92737 24456 0.85 2.86e-34
104 23 In3 Inhibitory neurons all ASIC2 40 99 0.86 1.29e-32
104 23 In3 Inhibitory neurons all GRIA2 2891 4572 0.69 3.48e-32
104 23 In3 Inhibitory neurons all NFIX 4784 7788 1.19 1.62e-31
104 23 In3 Inhibitory neurons all SLC8A1 6546 11068 0.63 1.78e-31
104 23 In3 Inhibitory neurons all DOCK4 9732 19192 1.01 3.14e-30
104 23 In3 Inhibitory neurons all CEP112 201134 28514 1.29 7.39e-30
104 23 In3 Inhibitory neurons all GNG2 54331 4404 1.17 1.22e-29
104 23 In3 Inhibitory neurons all COBL 23242 22199 1.08 1.71e-29
104 23 In3 Inhibitory neurons all ANKRD30BL 554226 35167 0.76 1.08e-27
104 23 In3 Inhibitory neurons all TNR 7143 11953 1.17 2.25e-27
104 23 In3 Inhibitory neurons all NPAS2 4862 7895 1.12 1.06e-25
104 23 In3 Inhibitory neurons all SEMA6D 80031 16770 0.66 1.63e-25
104 23 In3 Inhibitory neurons all PTPRO 5800 9678 0.88 4.26e-25
104 23 In3 Inhibitory neurons all SYT17 51760 24119 1.18 1.13e-23
104 23 In3 Inhibitory neurons all HIVEP1 3096 4920 1.3 3.06e-23
104 23 In3 Inhibitory neurons all PRKCA 5578 9393 0.75 3.21e-23
104 23 In3 Inhibitory neurons all MARCHF1 55016 26077 0.75 3.34e-23
104 23 In3 Inhibitory neurons all SCG2 7857 10575 1.03 1.43e-22
104 23 In3 Inhibitory neurons all TSHZ2 128553 13010 0.89 2e-22
104 23 In3 Inhibitory neurons all ZNF385B 151126 26332 0.84 4.46e-22
104 23 In3 Inhibitory neurons all LRRN3 54674 17200 1.57 5.26e-22
104 23 In3 Inhibitory neurons all PLCB4 5332 9059 0.95 1.92e-21
104 23 In3 Inhibitory neurons all KCND3 3752 6239 0.83 5.69e-21
104 23 In3 Inhibitory neurons all SLCO3A1 28232 10952 0.97 9.19e-21
104 23 In3 Inhibitory neurons all ZMAT4 79698 25844 0.61 1.68e-18
104 23 In3 Inhibitory neurons all SCN3A 6328 10590 0.75 2.32e-18
104 23 In3 Inhibitory neurons all CDH9 1007 1768 0.82 2.46e-18
104 23 In3 Inhibitory neurons all CDHR3 222256 26308 1.15 4.58e-18
104 23 In3 Inhibitory neurons all DCC 1630 2701 0.78 1.23e-17
104 23 In3 Inhibitory neurons all KCNIP1 30820 15521 0.6 2.11e-17
104 23 In3 Inhibitory neurons all TMEM232 642987 37270 0.96 1.16e-16
104 23 In3 Inhibitory neurons all GNAI1 2770 4384 1.29 1.4e-16
104 23 In3 Inhibitory neurons all FLRT2 23768 3761 0.71 1.59e-16
104 23 In3 Inhibitory neurons all CDR2 1039 1799 0.97 1.63e-16
104 23 In3 Inhibitory neurons all MBOAT2 129642 25193 0.83 1.65e-16
104 23 In3 Inhibitory neurons all RERG 85004 15980 0.75 2.25e-16
104 23 In3 Inhibitory neurons all BCL2 596 990 1.26 4.34e-16
104 23 In3 Inhibitory neurons all GPR137C 283554 25445 0.79 5.41e-16
104 23 In3 Inhibitory neurons all TTC28 23331 29179 0.61 1.22e-15
104 23 In3 Inhibitory neurons all CDH4 1002 1763 1.21 3.47e-15
104 23 In3 Inhibitory neurons all CSGALNACT1 55790 24290 1.32 1.44e-14
104 23 In3 Inhibitory neurons all PLS3 5358 9091 1.06 2.55e-14
104 23 In3 Inhibitory neurons all CACNA1E 777 1392 0.81 4.11e-14
104 23 In3 Inhibitory neurons all ATXN1 6310 10548 0.51 1.34e-13
104 23 In3 Inhibitory neurons all NPTXR 23467 7954 1.11 2.1e-13
104 23 In3 Inhibitory neurons all PRICKLE2 166336 20340 0.91 9.55e-13
104 23 In3 Inhibitory neurons all SLC7A14 57709 29326 0.99 3.95e-12
104 23 In3 Inhibitory neurons all KCNB2 9312 6232 0.62 6.08e-12
104 23 In3 Inhibitory neurons all FNBP1L 54874 20851 0.85 7.36e-12
104 23 In3 Inhibitory neurons all SPOCK1 6695 11251 0.75 1.01e-11
104 23 In3 Inhibitory neurons all KCNJ3 3760 6264 0.57 1.17e-11
104 23 In3 Inhibitory neurons all PLPPR1 54886 25993 0.74 2.56e-11
104 23 In3 Inhibitory neurons all DGKI 9162 2855 0.57 3.77e-11
104 23 In3 Inhibitory neurons all TXNDC16 57544 19965 1 7.32e-11
104 23 In3 Inhibitory neurons all KIAA1549L 25758 24836 0.88 1.02e-10
104 23 In3 Inhibitory neurons all SGK1 6446 10810 0.72 1.23e-10
104 23 In3 Inhibitory neurons all KIDINS220 57498 29508 0.85 1.44e-10
104 23 In3 Inhibitory neurons all FOXN3 1112 1928 0.65 2.26e-10
104 23 In3 Inhibitory neurons all NTN4 59277 13658 1.05 2.69e-10
104 23 In3 Inhibitory neurons all AP1S2 8905 560 0.65 3.09e-10
104 23 In3 Inhibitory neurons all SUSD4 55061 25470 0.8 3.25e-10
104 23 In3 Inhibitory neurons all NEDD4L 23327 7728 0.5 5.32e-10
104 23 In3 Inhibitory neurons all BICD1 636 1049 0.57 5.77e-10
104 23 In3 Inhibitory neurons all RIPOR2 9750 13872 0.71 9.71e-10
104 23 In3 Inhibitory neurons all ASXL3 80816 29357 0.85 1.11e-09
104 23 In3 Inhibitory neurons all MPP6 51678 18167 0.83 2.59e-09
104 23 In3 Inhibitory neurons all PDZD2 23037 18486 0.61 3.48e-09
104 23 In3 Inhibitory neurons all PKNOX2 63876 16714 0.71 4.43e-09
104 23 In3 Inhibitory neurons all EXT1 2131 3512 0.67 4.98e-09
104 23 In3 Inhibitory neurons all POU2F1 5451 9212 0.83 6.14e-09
104 23 In3 Inhibitory neurons all GRM8 2918 4600 0.89 6.51e-09
104 23 In3 Inhibitory neurons all LRRC39 127495 28228 0.99 8.93e-09
104 23 In3 Inhibitory neurons all RBFOX3 146713 27097 0.51 9.98e-09
104 23 In3 Inhibitory neurons all ARHGAP21 57584 23725 0.63 1.66e-08
104 23 In3 Inhibitory neurons all NR2F1 7025 7975 0.86 1.75e-08
104 23 In3 Inhibitory neurons all DKK3 27122 2893 0.58 2.39e-08
104 23 In3 Inhibitory neurons all PDE8B 8622 8794 0.54 6.91e-08
104 23 In3 Inhibitory neurons all WWP1 11059 17004 0.79 1.2e-07
104 23 In3 Inhibitory neurons all MSI2 124540 18585 0.61 1.4e-07
104 23 In3 Inhibitory neurons all NEBL 10529 16932 0.53 1.59e-07
104 23 In3 Inhibitory neurons all NRXN2 9379 8009 0.55 2.43e-07
104 23 In3 Inhibitory neurons all DOK6 220164 28301 0.6 3.54e-07
104 23 In3 Inhibitory neurons all GABRB3 2562 4083 0.5 3.9e-07
104 23 In3 Inhibitory neurons all CNTN3 5067 2173 0.57 5.11e-07
104 23 In3 Inhibitory neurons all C1orf21 81563 15494 0.65 1.11e-06
104 23 In3 Inhibitory neurons all ITSN2 50618 6184 0.66 1.82e-06
104 23 In3 Inhibitory neurons all NLGN4Y 22829 15529 0.86 6.86e-06
104 23 In3 Inhibitory neurons all SLC41A2 84102 31045 0.75 8.85e-06
104 23 In3 Inhibitory neurons all RPS6KA3 6197 10432 0.86 9.76e-06
104 23 In3 Inhibitory neurons all PRKAR2B 5577 9392 0.72 1.03e-05
104 23 In3 Inhibitory neurons all ROCK2 9475 10252 0.73 1.74e-05
104 23 In3 Inhibitory neurons all SNX32 254122 26423 0.69 1.89e-05
104 23 In3 Inhibitory neurons all EPHA7 2045 3390 0.64 2.36e-05
104 23 In3 Inhibitory neurons all ULK2 9706 13480 0.59 4.32e-05
104 23 In3 Inhibitory neurons all AFF2 2334 3776 0.68 6.29e-05
104 23 In3 Inhibitory neurons all SCN3B 55800 20665 0.53 0.000104900692314
104 23 In3 Inhibitory neurons all PGM2L1 283209 20898 0.56 0.000277762493717
104 23 In3 Inhibitory neurons all JAK2 3717 6192 0.68 0.000410332838148
104 23 In3 Inhibitory neurons all PDE1C 5137 8776 0.73 0.000613551069602
104 23 In3 Inhibitory neurons all RIMBP2 23504 30339 0.69 0.000640702486182
104 23 In3 Inhibitory neurons all ABR 29 81 0.51 0.001163147137106
104 23 In3 Inhibitory neurons all ABI1 10006 11320 0.62 0.001250764713544
104 23 In3 Inhibitory neurons all PLPPR4 9890 23496 0.54 0.001806345826447
104 23 In3 Inhibitory neurons all PHYHIPL 84457 29378 0.52 0.002134702918785
104 23 In3 Inhibitory neurons all RPS6KA5 9252 10434 0.66 0.002522986449693
104 23 In3 Inhibitory neurons all PGRMC1 10857 16090 0.5 0.004023491363154
104 23 In3 Inhibitory neurons all UBR5 51366 16806 0.52 0.004693767740554
104 23 In3 Inhibitory neurons all ATXN7L1 222255 22210 0.57 0.005014535223792
104 23 In3 Inhibitory neurons all PTPRS 5802 9681 0.67 0.005014535223792
104 23 In3 Inhibitory neurons all PARM1 25849 24536 0.65 0.005870443502567
104 23 In3 Inhibitory neurons all PGBD5 79605 19405 0.64 0.006325099922352
104 23 In3 Inhibitory neurons all RNGTT 8732 10073 0.63 0.007222014490167