Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:161
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 22 In2 Inhibitory neurons all RALYL 138046 27036 2.52 0
104 22 In2 Inhibitory neurons all TRHDE 29953 30748 3.5 0
104 22 In2 Inhibitory neurons all GRIK1 2897 4579 2.02 0
104 22 In2 Inhibitory neurons all PDE1A 5136 8774 2.93 6.76e-270
104 22 In2 Inhibitory neurons all ROBO2 6092 10250 1.3 1.99e-264
104 22 In2 Inhibitory neurons all SST 6750 11329 3.2 6.54e-220
104 22 In2 Inhibitory neurons all CACNA2D3 55799 15460 2.02 5.57e-215
104 22 In2 Inhibitory neurons all RBFOX1 54715 18222 0.9 4.7e-213
104 22 In2 Inhibitory neurons all PCDH11X 27328 8656 1.97 3.83e-191
104 22 In2 Inhibitory neurons all GRID2 2895 4576 1.49 1.39e-175
104 22 In2 Inhibitory neurons all SLC8A1 6546 11068 1.61 1.31e-169
104 22 In2 Inhibitory neurons all CTNNA2 1496 2510 1.53 9.37e-162
104 22 In2 Inhibitory neurons all NRXN3 9369 8010 0.69 2.63e-156
104 22 In2 Inhibitory neurons all SYNPR 132204 16507 1.37 5.41e-153
104 22 In2 Inhibitory neurons all RYR2 6262 10484 1.54 3.05e-147
104 22 In2 Inhibitory neurons all PCDH15 65217 14674 2.02 1.52e-146
104 22 In2 Inhibitory neurons all GRM1 2911 4593 2.26 3.76e-142
104 22 In2 Inhibitory neurons all ROBO1 6091 10249 1.37 9.98e-139
104 22 In2 Inhibitory neurons all ST6GALNAC5 81849 19342 1.89 1.69e-133
104 22 In2 Inhibitory neurons all LHFPL3 375612 6589 2 1.75e-132
104 22 In2 Inhibitory neurons all KIAA1217 56243 25428 1.08 5.02e-124
104 22 In2 Inhibitory neurons all ASTN2 23245 17021 1.24 2.04e-121
104 22 In2 Inhibitory neurons all NPAS3 64067 19311 1.23 1.06e-113
104 22 In2 Inhibitory neurons all NETO1 81832 13823 2.06 7.42e-106
104 22 In2 Inhibitory neurons all XKR4 114786 29394 1.11 5.84e-105
104 22 In2 Inhibitory neurons all GRIK2 2898 4580 0.89 3.66e-102
104 22 In2 Inhibitory neurons all SPOCK3 50859 13565 1.09 5.17e-100
104 22 In2 Inhibitory neurons all CNTNAP2 26047 13830 0.52 4.01e-93
104 22 In2 Inhibitory neurons all STXBP6 29091 19666 1.75 1.05e-87
104 22 In2 Inhibitory neurons all CDH13 1012 1753 1.31 8.36e-86
104 22 In2 Inhibitory neurons all SHISA6 388336 34491 1.61 4.73e-84
104 22 In2 Inhibitory neurons all PAWR 5074 8614 2.56 4.7e-80
104 22 In2 Inhibitory neurons all PLCH1 23007 29185 1.94 3.94e-79
104 22 In2 Inhibitory neurons all EPB41L2 2037 3379 1.95 5.18e-77
104 22 In2 Inhibitory neurons all GPC6 10082 4454 1.57 5.33e-76
104 22 In2 Inhibitory neurons all GRIK3 2899 4581 1.85 3.82e-73
104 22 In2 Inhibitory neurons all ADAMTSL3 57188 14633 2.02 2.76e-72
104 22 In2 Inhibitory neurons all BCL11A 53335 13221 1.74 3.79e-69
104 22 In2 Inhibitory neurons all OXR1 55074 15822 0.74 1.2e-67
104 22 In2 Inhibitory neurons all SMYD3 64754 15513 1.02 1.8e-66
104 22 In2 Inhibitory neurons all LIMCH1 22998 29191 1.06 2.14e-65
104 22 In2 Inhibitory neurons all KCNB2 9312 6232 1.61 1.34e-64
104 22 In2 Inhibitory neurons all TENM2 57451 29943 0.69 9.55e-64
104 22 In2 Inhibitory neurons all KIF26B 55083 25484 1.42 6.65e-62
104 22 In2 Inhibitory neurons all SOX6 55553 16421 0.94 9.84e-61
104 22 In2 Inhibitory neurons all NELL1 4745 7750 1.73 1.16e-60
104 22 In2 Inhibitory neurons all TSHZ3 57616 30700 1.79 5.65e-59
104 22 In2 Inhibitory neurons all DMD 1756 2928 0.99 8.26e-58
104 22 In2 Inhibitory neurons all CDH8 1006 1767 1.42 9.83e-58
104 22 In2 Inhibitory neurons all RGS6 9628 10002 1.25 3.69e-57
104 22 In2 Inhibitory neurons all RIMS2 9699 17283 0.68 2.76e-56
104 22 In2 Inhibitory neurons all GPM6A 2823 4460 0.83 1.96e-55
104 22 In2 Inhibitory neurons all SLC24A2 25769 10976 0.99 2.63e-54
104 22 In2 Inhibitory neurons all L3MBTL4 91133 26677 1.05 1.24e-53
104 22 In2 Inhibitory neurons all PCDH11Y 83259 15813 1.84 5.74e-49
104 22 In2 Inhibitory neurons all GRIN3A 116443 16767 1.62 2.39e-48
104 22 In2 Inhibitory neurons all RUNX1T1 862 1535 1.2 4.47e-48
104 22 In2 Inhibitory neurons all CADPS 8618 1426 0.68 5.19e-47
104 22 In2 Inhibitory neurons all MGAT4C 25834 30871 1.05 4.2e-46
104 22 In2 Inhibitory neurons all PTPRR 5801 9680 1.65 7.85e-45
104 22 In2 Inhibitory neurons all FAT3 120114 23112 1.92 2.23e-44
104 22 In2 Inhibitory neurons all B3GAT2 135152 922 2.16 4.99e-44
104 22 In2 Inhibitory neurons all GALNT14 79623 22946 2.04 8.76e-44
104 22 In2 Inhibitory neurons all ANKS1B 56899 24600 0.53 2.41e-42
104 22 In2 Inhibitory neurons all COL19A1 1310 2196 1.57 6.83e-42
104 22 In2 Inhibitory neurons all CACNB2 783 1402 1.07 1.49e-41
104 22 In2 Inhibitory neurons all FRMD3 257019 24125 1.68 5.94e-41
104 22 In2 Inhibitory neurons all GRIA3 2892 4573 1.02 2.79e-38
104 22 In2 Inhibitory neurons all ADGRL2 23266 18582 1 6.32e-38
104 22 In2 Inhibitory neurons all DPP6 1804 3010 0.7 1.09e-37
104 22 In2 Inhibitory neurons all NTM 50863 17941 0.93 2.29e-37
104 22 In2 Inhibitory neurons all PDE1C 5137 8776 1.3 7.76e-37
104 22 In2 Inhibitory neurons all GAP43 2596 4140 1.73 8.8e-37
104 22 In2 Inhibitory neurons all TLN2 83660 15447 1.43 2.07e-36
104 22 In2 Inhibitory neurons all ADGRL3 23284 20974 0.61 4.28e-35
104 22 In2 Inhibitory neurons all EPHB6 2051 3396 1.56 4.39e-34
104 22 In2 Inhibitory neurons all NXPH1 30010 20693 0.6 1.22e-31
104 22 In2 Inhibitory neurons all CDH9 1007 1768 1.01 1.48e-31
104 22 In2 Inhibitory neurons all COL25A1 84570 18603 1.6 7.65e-30
104 22 In2 Inhibitory neurons all CHRM3 1131 1952 0.6 5.38e-29
104 22 In2 Inhibitory neurons all WLS 79971 30238 1.4 1.4e-28
104 22 In2 Inhibitory neurons all CNTN3 5067 2173 1.15 2.28e-28
104 22 In2 Inhibitory neurons all RAB3B 5865 9778 1.57 1.91e-23
104 22 In2 Inhibitory neurons all THRB 7068 11799 0.67 3.21e-23
104 22 In2 Inhibitory neurons all TENM3 55714 29944 0.71 7.5e-23
104 22 In2 Inhibitory neurons all RASGRF2 5924 9876 0.92 4.27e-22
104 22 In2 Inhibitory neurons all ADCY2 108 233 0.85 2.99e-21
104 22 In2 Inhibitory neurons all PCSK5 5125 8747 1.41 7.94e-21
104 22 In2 Inhibitory neurons all CTNND2 1501 2516 0.56 1.19e-20
104 22 In2 Inhibitory neurons all CCSER1 401145 29349 0.5 7.79e-20
104 22 In2 Inhibitory neurons all DAPK1 1612 2674 1.21 8.48e-20
104 22 In2 Inhibitory neurons all TMTC1 83857 24099 1.23 8.92e-20
104 22 In2 Inhibitory neurons all CDH10 1008 1749 0.93 9.23e-20
104 22 In2 Inhibitory neurons all ZNF704 619279 32291 1.18 2.98e-19
104 22 In2 Inhibitory neurons all ADCY8 114 239 0.98 3.45e-19
104 22 In2 Inhibitory neurons all NEGR1 257194 17302 0.54 4.42e-19
104 22 In2 Inhibitory neurons all PPP2R2B 5521 9305 0.65 4.56e-19
104 22 In2 Inhibitory neurons all PAM 5066 8596 0.67 1.58e-18
104 22 In2 Inhibitory neurons all SPATS2L 26010 24574 1.13 2.67e-17
104 22 In2 Inhibitory neurons all SPHKAP 80309 30619 1.73 3.23e-17
104 22 In2 Inhibitory neurons all CDH2 1000 1759 1.15 7.34e-17
104 22 In2 Inhibitory neurons all CHN1 1123 1943 0.77 2.72e-15
104 22 In2 Inhibitory neurons all NAV2 89797 15997 0.68 7.82e-15
104 22 In2 Inhibitory neurons all PDE4B 5142 8781 0.82 6.21e-14
104 22 In2 Inhibitory neurons all KCTD16 57528 29244 0.54 1.54e-13
104 22 In2 Inhibitory neurons all CRB1 23418 2343 1.15 1.74e-13
104 22 In2 Inhibitory neurons all PDE8B 8622 8794 0.66 7.12e-13
104 22 In2 Inhibitory neurons all PCLO 27445 13406 0.5 1.5e-12
104 22 In2 Inhibitory neurons all ENOX1 55068 25474 0.56 4.96e-12
104 22 In2 Inhibitory neurons all RAPGEF5 9771 16862 1.03 5.74e-12
104 22 In2 Inhibitory neurons all ELAVL2 1993 3313 0.73 1.22e-11
104 22 In2 Inhibitory neurons all UNC13C 440279 23149 0.62 1.47e-11
104 22 In2 Inhibitory neurons all CHL1 10752 1939 0.76 1.47e-11
104 22 In2 Inhibitory neurons all MITF 4286 7105 1.3 1.89e-11
104 22 In2 Inhibitory neurons all LHX6 26468 21735 1.13 2.83e-11
104 22 In2 Inhibitory neurons all PHACTR2 9749 20956 1.28 3.71e-11
104 22 In2 Inhibitory neurons all MAFB 9935 6408 1.22 5.51e-11
104 22 In2 Inhibitory neurons all TMTC2 160335 25440 0.72 5.82e-11
104 22 In2 Inhibitory neurons all GPI 2821 4458 1.28 3.56e-10
104 22 In2 Inhibitory neurons all PTPRD 5789 9668 0.56 4.24e-10
104 22 In2 Inhibitory neurons all SIDT1 54847 25967 1.29 5.73e-10
104 22 In2 Inhibitory neurons all CACNG3 10368 1407 0.91 1.32e-09
104 22 In2 Inhibitory neurons all PDZRN3 23024 17704 0.67 2.22e-09
104 22 In2 Inhibitory neurons all ANKRD44 91526 25259 0.93 3.2e-09
104 22 In2 Inhibitory neurons all SORBS2 8470 24098 0.79 4.14e-09
104 22 In2 Inhibitory neurons all TNIK 23043 30765 0.6 4.78e-09
104 22 In2 Inhibitory neurons all TMSB4X 7114 11881 0.66 5.92e-09
104 22 In2 Inhibitory neurons all MAF 4094 6776 1.23 1.7e-08
104 22 In2 Inhibitory neurons all RBMS1 5937 9907 1.1 7.06e-08
104 22 In2 Inhibitory neurons all ITPR1 3708 6180 0.86 1.34e-07
104 22 In2 Inhibitory neurons all AAK1 22848 19679 0.51 1.03e-06
104 22 In2 Inhibitory neurons all SCN3B 55800 20665 0.78 2.43e-06
104 22 In2 Inhibitory neurons all ANKRD36 375248 24079 0.82 2.93e-06
104 22 In2 Inhibitory neurons all BACH1 571 935 0.78 4.11e-06
104 22 In2 Inhibitory neurons all ANKRD12 23253 29135 0.54 5.28e-06
104 22 In2 Inhibitory neurons all SH3GL3 6457 10832 0.6 6.15e-06
104 22 In2 Inhibitory neurons all VSNL1 7447 12722 0.67 7.21e-06
104 22 In2 Inhibitory neurons all CORO2B 10391 2256 1.08 1.2e-05
104 22 In2 Inhibitory neurons all EXOC6 54536 23196 0.93 1.3e-05
104 22 In2 Inhibitory neurons all TENM1 10178 8117 0.77 1.55e-05
104 22 In2 Inhibitory neurons all KCNIP1 30820 15521 0.54 2.03e-05
104 22 In2 Inhibitory neurons all RIPOR2 9750 13872 0.82 2.3e-05
104 22 In2 Inhibitory neurons all OSBPL8 114882 16396 0.57 2.78e-05
104 22 In2 Inhibitory neurons all RAB3C 115827 30269 0.5 7.12e-05
104 22 In2 Inhibitory neurons all PCDH7 5099 8659 0.61 0.000131102075959
104 22 In2 Inhibitory neurons all CDH7 1005 1766 1.09 0.000246438809942
104 22 In2 Inhibitory neurons all KLHL5 51088 6356 0.63 0.000436951657585
104 22 In2 Inhibitory neurons all BASP1 10409 957 0.58 0.00072198220226
104 22 In2 Inhibitory neurons all RAP1GDS1 5910 9859 0.71 0.000791679958223
104 22 In2 Inhibitory neurons all FARP1 10160 3591 0.57 0.0008125632001
104 22 In2 Inhibitory neurons all PACRG 135138 19152 0.64 0.001262962814308
104 22 In2 Inhibitory neurons all ARHGAP32 9743 17399 0.67 0.001593131461715
104 22 In2 Inhibitory neurons all RBPJ 3516 5724 0.86 0.004052445300604
104 22 In2 Inhibitory neurons all RUNDC3B 154661 30286 0.64 0.004385626910204
104 22 In2 Inhibitory neurons all RANBP17 64901 14428 0.56 0.004791355250079
104 22 In2 Inhibitory neurons all EFNA5 1946 3225 0.58 0.005581866302275
104 22 In2 Inhibitory neurons all FAM110B 90362 28587 0.69 0.005927428513799
104 22 In2 Inhibitory neurons all SCN3A 6328 10590 0.51 0.006159693214843
104 22 In2 Inhibitory neurons all RPS24 6229 10411 0.87 0.008142568320201
104 22 In2 Inhibitory neurons all KLHL32 114792 21221 0.58 0.008614412106358
104 22 In2 Inhibitory neurons all FAM153B 202134 27323 0.58 0.009083074561123