Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:204
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 20 In10 Inhibitory neurons all DDR2 4921 2731 4.81 1.6e-218
104 20 In10 Inhibitory neurons all RELN 5649 9957 3.38 7.51e-158
104 20 In10 Inhibitory neurons all IL1RAPL2 26280 5997 3.35 1.04e-120
104 20 In10 Inhibitory neurons all CXCL14 9547 10640 2.45 1.47e-80
104 20 In10 Inhibitory neurons all ITGB8 3696 6163 3.51 1.71e-80
104 20 In10 Inhibitory neurons all SDK2 54549 19308 2.95 3.26e-75
104 20 In10 Inhibitory neurons all MAML2 84441 16259 2.84 1.44e-71
104 20 In10 Inhibitory neurons all CDH4 1002 1763 2.71 1.05e-67
104 20 In10 Inhibitory neurons all RALYL 138046 27036 1.86 6.62e-58
104 20 In10 Inhibitory neurons all SLIT3 6586 11087 3.06 7.31e-50
104 20 In10 Inhibitory neurons all SORCS3 22986 16699 2.19 2.13e-48
104 20 In10 Inhibitory neurons all CHRNA7 1139 1960 2.52 5.86e-46
104 20 In10 Inhibitory neurons all GREB1L 80000 31042 2.23 3.33e-45
104 20 In10 Inhibitory neurons all ADARB2 105 227 1.14 3.72e-40
104 20 In10 Inhibitory neurons all FBXL7 23194 13604 1.49 6.33e-40
104 20 In10 Inhibitory neurons all MAN1A1 4121 6821 1.78 4.26e-37
104 20 In10 Inhibitory neurons all NKAIN2 154215 16443 1.27 2.18e-36
104 20 In10 Inhibitory neurons all SEMA6D 80031 16770 1.46 7.01e-36
104 20 In10 Inhibitory neurons all HS3ST5 222537 19419 1.92 4.04e-34
104 20 In10 Inhibitory neurons all SGCD 6444 10807 1.64 5.27e-34
104 20 In10 Inhibitory neurons all MAML3 55534 16272 1.99 7.81e-34
104 20 In10 Inhibitory neurons all PCDH9 5101 8661 0.92 1.8e-33
104 20 In10 Inhibitory neurons all SLC8A1 6546 11068 1.17 9.71e-33
104 20 In10 Inhibitory neurons all SNCA 6622 11138 2.19 2.81e-32
104 20 In10 Inhibitory neurons all SEZ6L 23544 10763 1.62 6.23e-32
104 20 In10 Inhibitory neurons all PTN 5764 9630 2.43 2.63e-31
104 20 In10 Inhibitory neurons all NR2F2 7026 7976 1.86 2.65e-31
104 20 In10 Inhibitory neurons all ZNF804B 219578 21958 1.55 8.11e-29
104 20 In10 Inhibitory neurons all PCSK6 5046 8569 2.35 2.93e-28
104 20 In10 Inhibitory neurons all CNR1 1268 2159 1.78 1.46e-27
104 20 In10 Inhibitory neurons all NRXN1 9378 8008 0.84 5.56e-26
104 20 In10 Inhibitory neurons all CCK 885 1569 1.69 1.65e-25
104 20 In10 Inhibitory neurons all HMBOX1 79618 26137 1.69 3.73e-25
104 20 In10 Inhibitory neurons all ATP2B4 493 817 1.95 6.33e-25
104 20 In10 Inhibitory neurons all PDE4B 5142 8781 1.02 2.66e-24
104 20 In10 Inhibitory neurons all RIMS2 9699 17283 0.83 4.42e-24
104 20 In10 Inhibitory neurons all GRIA2 2891 4572 1.06 1.63e-23
104 20 In10 Inhibitory neurons all TMTC2 160335 25440 1.13 2.35e-23
104 20 In10 Inhibitory neurons all L3MBTL4 91133 26677 0.98 5.38e-23
104 20 In10 Inhibitory neurons all NFIB 4781 7785 1.1 1.7e-22
104 20 In10 Inhibitory neurons all NCKAP5 344148 29847 1.9 2.03e-22
104 20 In10 Inhibitory neurons all DOCK10 55619 23479 1.1 3.15e-22
104 20 In10 Inhibitory neurons all ALK 238 427 1.36 4.7e-22
104 20 In10 Inhibitory neurons all PRR16 51334 29654 1.57 6.44e-22
104 20 In10 Inhibitory neurons all ZNF385D 79750 26191 0.89 1.93e-21
104 20 In10 Inhibitory neurons all ENOX1 55068 25474 0.98 2.41e-21
104 20 In10 Inhibitory neurons all GALNTL6 442117 33844 0.79 8.69e-21
104 20 In10 Inhibitory neurons all SPOCK1 6695 11251 0.84 2.82e-20
104 20 In10 Inhibitory neurons all PPFIBP1 8496 9249 1.39 1.07e-19
104 20 In10 Inhibitory neurons all FRMD4B 23150 24886 1.63 1.12e-19
104 20 In10 Inhibitory neurons all RAB37 326624 30268 1.82 2.04e-19
104 20 In10 Inhibitory neurons all PDZRN4 29951 30552 1.96 2.41e-19
104 20 In10 Inhibitory neurons all RBMS3 27303 13427 0.97 4.94e-19
104 20 In10 Inhibitory neurons all CDHR3 222256 26308 1.49 7.58e-19
104 20 In10 Inhibitory neurons all SLC35F4 341880 19845 1.36 3.8e-18
104 20 In10 Inhibitory neurons all DSCAM 1826 3039 0.78 6.07e-18
104 20 In10 Inhibitory neurons all PLXDC2 84898 21013 1.83 2.23e-17
104 20 In10 Inhibitory neurons all CHL1 10752 1939 1.08 1.76e-16
104 20 In10 Inhibitory neurons all KIRREL3 84623 23204 0.76 2.18e-16
104 20 In10 Inhibitory neurons all NR2F1 7025 7975 1.61 3.08e-16
104 20 In10 Inhibitory neurons all PLS3 5358 9091 1.53 8.56e-16
104 20 In10 Inhibitory neurons all KCNQ5 56479 6299 0.69 1.28e-15
104 20 In10 Inhibitory neurons all SHISA9 729993 37231 0.99 1.68e-15
104 20 In10 Inhibitory neurons all CREB5 9586 16844 1.81 2.4e-15
104 20 In10 Inhibitory neurons all PLD5 200150 26879 0.94 3.28e-15
104 20 In10 Inhibitory neurons all GRIK2 2898 4580 0.64 6.06e-15
104 20 In10 Inhibitory neurons all SHISA6 388336 34491 1.07 7.67e-15
104 20 In10 Inhibitory neurons all DGKB 1607 2850 0.88 9.09e-15
104 20 In10 Inhibitory neurons all AP1S2 8905 560 1.2 1.11e-14
104 20 In10 Inhibitory neurons all MYO16 23026 29822 0.83 1.42e-14
104 20 In10 Inhibitory neurons all WIF1 11197 18081 1.73 1.97e-14
104 20 In10 Inhibitory neurons all PID1 55022 26084 1 4.84e-14
104 20 In10 Inhibitory neurons all COBL 23242 22199 1 1.2e-13
104 20 In10 Inhibitory neurons all RGS12 6002 9994 0.73 1.38e-13
104 20 In10 Inhibitory neurons all LINGO2 158038 21207 0.8 1.95e-13
104 20 In10 Inhibitory neurons all ARHGAP21 57584 23725 0.99 2.42e-13
104 20 In10 Inhibitory neurons all CLDN11 5010 8514 2.15 3.44e-13
104 20 In10 Inhibitory neurons all SVEP1 79987 15985 1.23 3.88e-13
104 20 In10 Inhibitory neurons all NPAS3 64067 19311 0.53 4.78e-13
104 20 In10 Inhibitory neurons all AFF3 3899 6473 0.87 1.91e-12
104 20 In10 Inhibitory neurons all CACNA1E 777 1392 0.88 2.64e-12
104 20 In10 Inhibitory neurons all WWP1 11059 17004 1 5.58e-12
104 20 In10 Inhibitory neurons all CHRM3 1131 1952 0.6 7.08e-12
104 20 In10 Inhibitory neurons all PBX1 5087 8632 0.78 1.08e-11
104 20 In10 Inhibitory neurons all NTM 50863 17941 0.59 1.26e-11
104 20 In10 Inhibitory neurons all MGAT5 4249 7049 1.31 1.88e-11
104 20 In10 Inhibitory neurons all CCDC85A 114800 29400 1.17 3.71e-11
104 20 In10 Inhibitory neurons all CHRM2 1129 1951 0.99 4.21e-11
104 20 In10 Inhibitory neurons all SLCO3A1 28232 10952 0.95 5.25e-11
104 20 In10 Inhibitory neurons all RERG 85004 15980 0.89 9.4e-11
104 20 In10 Inhibitory neurons all NR3C2 4306 7979 0.82 1.04e-10
104 20 In10 Inhibitory neurons all EEPD1 80820 22223 1.41 1.25e-10
104 20 In10 Inhibitory neurons all HPCAL1 3241 5145 1.18 1.87e-10
104 20 In10 Inhibitory neurons all RNF220 55182 25552 1.97 2.04e-10
104 20 In10 Inhibitory neurons all QKI 9444 21100 0.81 2.89e-10
104 20 In10 Inhibitory neurons all LRRC3B 116135 28105 0.8 4.2e-10
104 20 In10 Inhibitory neurons all SH3D19 152503 30418 1.34 5.16e-10
104 20 In10 Inhibitory neurons all TMOD1 7111 11871 1.4 5.41e-10
104 20 In10 Inhibitory neurons all HIVEP1 3096 4920 1.28 1.51e-09
104 20 In10 Inhibitory neurons all NKAIN3 286183 26829 0.81 2.53e-09
104 20 In10 Inhibitory neurons all CLMP 79827 24039 1.39 4.79e-09
104 20 In10 Inhibitory neurons all UBE2QL1 134111 37269 1.35 7.78e-09
104 20 In10 Inhibitory neurons all CACNA1B 774 1389 0.64 7.78e-09
104 20 In10 Inhibitory neurons all KCNT2 343450 18866 0.58 8.53e-09
104 20 In10 Inhibitory neurons all ROR1 4919 10256 1.23 1.03e-08
104 20 In10 Inhibitory neurons all BMPER 168667 24154 1.21 1.29e-08
104 20 In10 Inhibitory neurons all APP 351 620 0.56 3.73e-08
104 20 In10 Inhibitory neurons all FAM110B 90362 28587 0.75 5.04e-08
104 20 In10 Inhibitory neurons all FUT9 10690 4020 0.79 5.41e-08
104 20 In10 Inhibitory neurons all PRKCA 5578 9393 0.59 6.17e-08
104 20 In10 Inhibitory neurons all PDZD2 23037 18486 0.7 6.7e-08
104 20 In10 Inhibitory neurons all GAS7 8522 4169 0.84 8.27e-08
104 20 In10 Inhibitory neurons all DGKH 160851 2854 1.05 9.24e-08
104 20 In10 Inhibitory neurons all MAP4K4 9448 6866 0.82 1.48e-07
104 20 In10 Inhibitory neurons all SYN3 8224 11496 0.74 1.8e-07
104 20 In10 Inhibitory neurons all FGF13 2258 3670 0.5 1.85e-07
104 20 In10 Inhibitory neurons all ANKRD30BL 554226 35167 0.54 2.55e-07
104 20 In10 Inhibitory neurons all SLC2A13 114134 15956 0.56 4e-07
104 20 In10 Inhibitory neurons all MOB3B 79817 23825 1.21 4.18e-07
104 20 In10 Inhibitory neurons all MYO1D 4642 7598 1.14 4.63e-07
104 20 In10 Inhibitory neurons all NFIX 4784 7788 0.87 4.94e-07
104 20 In10 Inhibitory neurons all KLHL29 114818 29404 1.16 7.88e-07
104 20 In10 Inhibitory neurons all SPHKAP 80309 30619 0.89 8.47e-07
104 20 In10 Inhibitory neurons all C1orf61 10485 30780 1.11 8.71e-07
104 20 In10 Inhibitory neurons all SCG2 7857 10575 0.77 8.71e-07
104 20 In10 Inhibitory neurons all GABRG2 2566 4087 0.89 9.8e-07
104 20 In10 Inhibitory neurons all LIFR 3977 6597 1.42 1.01e-06
104 20 In10 Inhibitory neurons all GABRA2 2555 4076 0.83 1.71e-06
104 20 In10 Inhibitory neurons all GABRB3 2562 4083 0.65 1.91e-06
104 20 In10 Inhibitory neurons all PRUNE2 158471 25209 1.4 1.95e-06
104 20 In10 Inhibitory neurons all FAM13C 220965 19371 1.12 2.23e-06
104 20 In10 Inhibitory neurons all ZSWIM6 57688 29316 0.89 3.01e-06
104 20 In10 Inhibitory neurons all TRPM3 80036 17992 0.83 3.22e-06
104 20 In10 Inhibitory neurons all DENND2A 27147 22212 1 3.5e-06
104 20 In10 Inhibitory neurons all GABRA1 2554 4075 0.66 3.82e-06
104 20 In10 Inhibitory neurons all DIP2B 57609 29284 0.8 4.58e-06
104 20 In10 Inhibitory neurons all FLNB 2317 3755 0.86 5.29e-06
104 20 In10 Inhibitory neurons all SGK1 6446 10810 0.59 6.19e-06
104 20 In10 Inhibitory neurons all TSPAN5 10098 17753 0.63 1.04e-05
104 20 In10 Inhibitory neurons all PDE1A 5136 8774 0.6 1.22e-05
104 20 In10 Inhibitory neurons all B3GAT2 135152 922 0.72 1.66e-05
104 20 In10 Inhibitory neurons all PHF14 9678 22203 0.72 1.73e-05
104 20 In10 Inhibitory neurons all EPHA5 2044 3389 0.91 1.9e-05
104 20 In10 Inhibitory neurons all IRF2BP2 359948 21729 1.12 2.24e-05
104 20 In10 Inhibitory neurons all ELMO1 9844 16286 1.04 2.58e-05
104 20 In10 Inhibitory neurons all KIAA1958 158405 23427 0.86 2.73e-05
104 20 In10 Inhibitory neurons all DOCK9 23348 14132 0.52 2.85e-05
104 20 In10 Inhibitory neurons all WLS 79971 30238 0.76 2.85e-05
104 20 In10 Inhibitory neurons all CHST11 50515 17422 1.04 3.25e-05
104 20 In10 Inhibitory neurons all GPR158 57512 23689 0.68 3.98e-05
104 20 In10 Inhibitory neurons all SCD5 79966 21088 0.79 4.57e-05
104 20 In10 Inhibitory neurons all PLXNA2 5362 9100 0.91 4.58e-05
104 20 In10 Inhibitory neurons all LPGAT1 9926 28985 1.12 5.35e-05
104 20 In10 Inhibitory neurons all AP3S1 1176 2013 1.06 7.05e-05
104 20 In10 Inhibitory neurons all RYBP 23429 10480 1.16 7.21e-05
104 20 In10 Inhibitory neurons all SERINC1 57515 13464 0.65 8.69e-05
104 20 In10 Inhibitory neurons all SCN3B 55800 20665 0.57 0.000119006868752
104 20 In10 Inhibitory neurons all EPN2 22905 18639 0.57 0.000196003072429
104 20 In10 Inhibitory neurons all KIAA1211 57482 29219 0.67 0.000212299369109
104 20 In10 Inhibitory neurons all RNF130 55819 18280 0.51 0.000294893969082
104 20 In10 Inhibitory neurons all CDH20 28316 1760 0.63 0.000329140536275
104 20 In10 Inhibitory neurons all ZNF704 619279 32291 0.59 0.000420554798608
104 20 In10 Inhibitory neurons all FAM49A 81553 25373 0.6 0.000473649092751
104 20 In10 Inhibitory neurons all TNRC6C 57690 29318 0.56 0.000528317703087
104 20 In10 Inhibitory neurons all PEAK1 79834 29431 0.94 0.000545829287317
104 20 In10 Inhibitory neurons all SLITRK4 139065 23502 0.97 0.000555596795194
104 20 In10 Inhibitory neurons all BCL2 596 990 0.74 0.000557517932421
104 20 In10 Inhibitory neurons all PARD3 56288 16051 0.58 0.000562204875373
104 20 In10 Inhibitory neurons all CSNK1E 1454 2453 0.61 0.000574395405144
104 20 In10 Inhibitory neurons all QDPR 5860 9752 1.22 0.000695237631019
104 20 In10 Inhibitory neurons all TBL1XR1 79718 29529 0.78 0.00070049200086
104 20 In10 Inhibitory neurons all AGPAT4 56895 20885 0.58 0.00071255260073
104 20 In10 Inhibitory neurons all CAMK4 814 1464 0.78 0.001019867645734
104 20 In10 Inhibitory neurons all SESN3 143686 23060 0.78 0.001056247132598
104 20 In10 Inhibitory neurons all ATXN7L1 222255 22210 0.62 0.001107119387031
104 20 In10 Inhibitory neurons all PGBD5 79605 19405 1.05 0.001115425890174
104 20 In10 Inhibitory neurons all SLC44A1 23446 18798 1.26 0.001360337735493
104 20 In10 Inhibitory neurons all CAMK2D 817 1462 0.6 0.001364658389167
104 20 In10 Inhibitory neurons all CPEB2 132864 21745 0.93 0.00137618400092
104 20 In10 Inhibitory neurons all MARCHF11 441061 33609 0.86 0.001398776980379
104 20 In10 Inhibitory neurons all HIPK2 28996 14402 0.56 0.001515556433584
104 20 In10 Inhibitory neurons all TRMT9B 57604 26725 0.68 0.001659411489624
104 20 In10 Inhibitory neurons all SLC7A14 57709 29326 0.76 0.001798130130955
104 20 In10 Inhibitory neurons all ELP4 26610 1171 0.68 0.001867890120866
104 20 In10 Inhibitory neurons all TUBA1A 7846 20766 0.74 0.001867890120866
104 20 In10 Inhibitory neurons all MARK3 4140 6897 0.54 0.002145565407743
104 20 In10 Inhibitory neurons all CSAD 51380 18966 0.53 0.002190529530159
104 20 In10 Inhibitory neurons all KCND3 3752 6239 0.55 0.002200846572905
104 20 In10 Inhibitory neurons all CTNNA3 29119 2511 1.52 0.002228653216251
104 20 In10 Inhibitory neurons all GPM6B 2824 4461 0.93 0.002243343943675
104 20 In10 Inhibitory neurons all DOCK4 9732 19192 0.7 0.00267787536741
104 20 In10 Inhibitory neurons all SARAF 51669 28789 0.53 0.002767099022124
104 20 In10 Inhibitory neurons all CCP110 9738 24342 0.72 0.003132846449746
104 20 In10 Inhibitory neurons all STMN4 81551 16078 0.82 0.003883148116322
104 20 In10 Inhibitory neurons all PLCXD3 345557 31822 0.76 0.004060975111615
104 20 In10 Inhibitory neurons all ADD3 120 245 0.6 0.004513066316537
104 20 In10 Inhibitory neurons all SYT17 51760 24119 0.63 0.004535566964897
104 20 In10 Inhibitory neurons all ZNF462 58499 21684 0.91 0.004563431172503
104 20 In10 Inhibitory neurons all CREBRF 153222 24050 0.95 0.006288354584009
104 20 In10 Inhibitory neurons all EPB41L3 23136 3380 0.55 0.006991527594955
104 20 In10 Inhibitory neurons all RAB30 27314 9770 1.01 0.007187403114197
104 20 In10 Inhibitory neurons all NPTXR 23467 7954 0.79 0.007534760718757
104 20 In10 Inhibitory neurons all ERBIN 55914 15842 0.57 0.007638184160948
104 20 In10 Inhibitory neurons all ENTPD3 956 3365 0.67 0.009564565013438