Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:72
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 2 Ast1 Astrocytes all RASGEF1B 153020 24881 1.42 7.12E-105
104 2 Ast1 Astrocytes all LINGO1 84894 21205 1.33 8.12E-91
104 2 Ast1 Astrocytes all GLUL 2752 4341 0.97 2.06E-82
104 2 Ast1 Astrocytes all GJA1 2697 4274 0.99 5.24E-81
104 2 Ast1 Astrocytes all CLU 1191 2095 0.94 9.76E-78
104 2 Ast1 Astrocytes all SLC26A3 1811 3018 1.58 2.82E-74
104 2 Ast1 Astrocytes all MT1E 4493 7397 1.31 6.75E-68
104 2 Ast1 Astrocytes all MT2A 4502 7406 0.99 1.02E-57
104 2 Ast1 Astrocytes all CPE 1363 2303 0.72 4.24E-54
104 2 Ast1 Astrocytes all MT1G 4495 7399 1.49 4.07E-49
104 2 Ast1 Astrocytes all CSRP1 1465 2469 1.15 8.47E-43
104 2 Ast1 Astrocytes all TMBIM6 7009 11723 0.97 1.98E-37
104 2 Ast1 Astrocytes all KCNJ10 3766 6256 1.09 3.03E-36
104 2 Ast1 Astrocytes all MT1M 4499 14296 1.33 5.21E-33
104 2 Ast1 Astrocytes all ITM2C 81618 6175 0.76 3.51E-31
104 2 Ast1 Astrocytes all RANBP3L 202151 26353 0.67 2.82E-29
104 2 Ast1 Astrocytes all NAT8L 339983 26742 0.64 3.36E-27
104 2 Ast1 Astrocytes all SDC4 6385 10661 0.82 3.47E-26
104 2 Ast1 Astrocytes all ZFP36L1 677 1107 0.58 4.57E-26
104 2 Ast1 Astrocytes all METTL7A 25840 24550 0.74 8.88E-26
104 2 Ast1 Astrocytes all PSAP 5660 9498 0.62 5.07E-25
104 2 Ast1 Astrocytes all CD81 975 1701 0.69 7.29E-25
104 2 Ast1 Astrocytes all MRAS 22808 7227 0.74 1.7E-24
104 2 Ast1 Astrocytes all GPR37L1 9283 14923 0.68 4.75E-24
104 2 Ast1 Astrocytes all SLC39A12 221074 20860 0.74 8.18E-24
104 2 Ast1 Astrocytes all WFS1 7466 12762 0.9 1.42E-23
104 2 Ast1 Astrocytes all GPRC5B 51704 13308 0.58 1.91E-23
104 2 Ast1 Astrocytes all PRNP 5621 9449 0.64 2.61E-23
104 2 Ast1 Astrocytes all PBXIP1 57326 21199 0.86 4.31E-23
104 2 Ast1 Astrocytes all ATP1B2 482 805 0.57 4.06E-22
104 2 Ast1 Astrocytes all VSIR 64115 30085 1.01 5.44E-22
104 2 Ast1 Astrocytes all HTRA1 5654 9476 0.79 1.55E-19
104 2 Ast1 Astrocytes all SIRPA 140885 9662 0.71 2.53E-19
104 2 Ast1 Astrocytes all BSG 682 1116 0.7 1.6E-17
104 2 Ast1 Astrocytes all VIM 7431 12692 1.01 2.3E-17
104 2 Ast1 Astrocytes all FAM107A 11170 30827 0.56 7.29E-17
104 2 Ast1 Astrocytes all SOX9 6662 11204 0.63 3.26E-16
104 2 Ast1 Astrocytes all HSP90AB1 3326 5258 0.8 1.22E-15
104 2 Ast1 Astrocytes all ENO1 2023 3350 0.7 4.81E-15
104 2 Ast1 Astrocytes all TSC22D1 8848 16826 0.68 5.69E-15
104 2 Ast1 Astrocytes all NACC2 138151 23846 0.77 1.22E-14
104 2 Ast1 Astrocytes all HSPB1 3315 5246 0.71 1.34E-14
104 2 Ast1 Astrocytes all IRS2 8660 6126 0.58 2.07E-14
104 2 Ast1 Astrocytes all EGLN3 112399 14661 0.68 2.76E-14
104 2 Ast1 Astrocytes all PLEC 5339 9069 0.5 1.01E-13
104 2 Ast1 Astrocytes all HP1BP3 50809 24973 0.61 1.63E-13
104 2 Ast1 Astrocytes all PPP1R1B 84152 9287 0.85 5.54E-13
104 2 Ast1 Astrocytes all CLSTN1 22883 17447 0.62 9.81E-13
104 2 Ast1 Astrocytes all EPHX1 2052 3401 0.66 4.18E-12
104 2 Ast1 Astrocytes all GRINA 2907 4589 0.69 8.09E-12
104 2 Ast1 Astrocytes all TP53BP2 7159 12000 0.69 9.46E-12
104 2 Ast1 Astrocytes all DDR1 780 2730 0.61 9.8E-12
104 2 Ast1 Astrocytes all RHOB 388 668 0.61 2.34E-11
104 2 Ast1 Astrocytes all PRCP 5547 9344 0.66 2.61E-11
104 2 Ast1 Astrocytes all ITM2B 9445 6174 0.56 2.61E-11
104 2 Ast1 Astrocytes all ENHO 375704 24838 0.67 2.03E-10
104 2 Ast1 Astrocytes all IL17RB 55540 18015 0.58 3.66E-10
104 2 Ast1 Astrocytes all SLC1A4 6509 10942 0.5 3.72E-10
104 2 Ast1 Astrocytes all COX7C 1350 2292 0.62 5.1E-10
104 2 Ast1 Astrocytes all GJB6 10804 4288 0.53 1.85E-9
104 2 Ast1 Astrocytes all TMEM47 83604 18515 0.51 1.86E-9
104 2 Ast1 Astrocytes all PTTG1IP 754 13524 0.6 2.2E-9
104 2 Ast1 Astrocytes all MIB1 57534 21086 0.6 4.07E-9
104 2 Ast1 Astrocytes all SLC7A2 6542 11060 0.65 5.73E-9
104 2 Ast1 Astrocytes all SESN3 143686 23060 0.6 1.58E-8
104 2 Ast1 Astrocytes all PTPRF 5792 9670 0.58 3.62E-8
104 2 Ast1 Astrocytes all LHX2 9355 6594 0.54 4.21E-8
104 2 Ast1 Astrocytes all CNTNAP3 79937 13834 0.56 3.14E-7
104 2 Ast1 Astrocytes all HSPA1A 3303 5232 0.59 3.76E-7
104 2 Ast1 Astrocytes all PTAR1 375743 30449 0.54 1.06E-6
104 2 Ast1 Astrocytes all SESN1 27244 21595 0.53 1.3E-6
104 2 Ast1 Astrocytes all SELENOW 6415 10752 0.51 2.46E-6