Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:224
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 19 In1 Inhibitory neurons all OLFM3 118427 17990 3.08 0
104 19 In1 Inhibitory neurons all ARPP21 10777 16968 2.42 0
104 19 In1 Inhibitory neurons all VIP 7432 12693 3.52 0
104 19 In1 Inhibitory neurons all ADARB2 105 227 1.41 0
104 19 In1 Inhibitory neurons all CALB2 794 1435 3.67 0
104 19 In1 Inhibitory neurons all DSCAM 1826 3039 1.92 0
104 19 In1 Inhibitory neurons all RGS12 6002 9994 1.9 4.46E-302
104 19 In1 Inhibitory neurons all KCNT2 343450 18866 2.18 1.93E-288
104 19 In1 Inhibitory neurons all PROX1 5629 9459 2.28 6.05E-267
104 19 In1 Inhibitory neurons all SYNPR 132204 16507 1.32 1.67E-252
104 19 In1 Inhibitory neurons all PDE4B 5142 8781 1.7 3.43E-247
104 19 In1 Inhibitory neurons all GRM7 2917 4599 1.51 4.66E-241
104 19 In1 Inhibitory neurons all ASIC4 55515 21263 3.26 1.61E-226
104 19 In1 Inhibitory neurons all COL11A1 1301 2186 2.8 2.99E-218
104 19 In1 Inhibitory neurons all MAPK4 5596 6878 2.47 7.21E-215
104 19 In1 Inhibitory neurons all GALNT13 114805 23242 1.69 7.53E-210
104 19 In1 Inhibitory neurons all LAMA3 3909 6483 3.04 2.28E-207
104 19 In1 Inhibitory neurons all RGS6 9628 10002 2.01 1.93E-205
104 19 In1 Inhibitory neurons all CHRM3 1131 1952 1.28 2.23E-202
104 19 In1 Inhibitory neurons all GALNTL6 442117 33844 1 4.49E-198
104 19 In1 Inhibitory neurons all ADAMTS6 11174 222 2.66 4.31E-195
104 19 In1 Inhibitory neurons all L3MBTL4 91133 26677 1.5 1.2E-194
104 19 In1 Inhibitory neurons all SVEP1 79987 15985 2.76 4.23E-181
104 19 In1 Inhibitory neurons all IGFBP5 3488 5474 3.56 4.25E-181
104 19 In1 Inhibitory neurons all LRP1B 53353 6693 0.89 5.28E-180
104 19 In1 Inhibitory neurons all SEZ6L 23544 10763 1.68 2.42E-178
104 19 In1 Inhibitory neurons all NLGN1 22871 14291 0.94 2.3E-176
104 19 In1 Inhibitory neurons all RYR3 6263 10485 2.8 3.06E-172
104 19 In1 Inhibitory neurons all TAC3 6866 11521 2.73 3.61E-167
104 19 In1 Inhibitory neurons all LRRC3B 116135 28105 2.48 1.09E-164
104 19 In1 Inhibitory neurons all PDE3A 5139 8778 2.36 5.27E-162
104 19 In1 Inhibitory neurons all CSMD1 64478 14026 0.84 1.77E-160
104 19 In1 Inhibitory neurons all NRXN1 9378 8008 0.77 2.65E-157
104 19 In1 Inhibitory neurons all SEZ6 124925 15955 2.34 5.39E-152
104 19 In1 Inhibitory neurons all ASIC2 40 99 1.09 4.55E-151
104 19 In1 Inhibitory neurons all NELL1 4745 7750 1.94 8.22E-148
104 19 In1 Inhibitory neurons all FIGN 55137 13285 1.91 3.69E-147
104 19 In1 Inhibitory neurons all TSHZ2 128553 13010 2.08 5.82E-143
104 19 In1 Inhibitory neurons all CADM2 253559 29849 0.69 2.93E-134
104 19 In1 Inhibitory neurons all VWC2L 402117 37203 2.02 4.48E-131
104 19 In1 Inhibitory neurons all CDH10 1008 1749 1.32 2.38E-117
104 19 In1 Inhibitory neurons all PTPRE 5791 9669 1.59 6.86E-117
104 19 In1 Inhibitory neurons all HS6ST3 266722 19134 1.09 1.44E-109
104 19 In1 Inhibitory neurons all COL21A1 81578 17025 1.54 4.52E-109
104 19 In1 Inhibitory neurons all THSD7A 221981 22207 1.07 5.43E-109
104 19 In1 Inhibitory neurons all SNTG1 54212 13740 0.69 7.67E-109
104 19 In1 Inhibitory neurons all LRFN2 57497 21226 1.86 7.75E-108
104 19 In1 Inhibitory neurons all LINGO2 158038 21207 0.99 1.65E-107
104 19 In1 Inhibitory neurons all NEDD4L 23327 7728 1.21 8.24E-107
104 19 In1 Inhibitory neurons all GALNT17 64409 16347 1.32 4.52E-105
104 19 In1 Inhibitory neurons all CCNG2 901 1593 2.28 1.0E-101
104 19 In1 Inhibitory neurons all KCNIP4 80333 30083 1.5 1.25E-101
104 19 In1 Inhibitory neurons all NPAS3 64067 19311 0.79 5.58E-99
104 19 In1 Inhibitory neurons all NR2F2 7026 7976 1.63 6.5E-99
104 19 In1 Inhibitory neurons all BICC1 80114 19351 1.82 4.42E-97
104 19 In1 Inhibitory neurons all B4GALT6 9331 929 1.66 1.69E-88
104 19 In1 Inhibitory neurons all CIT 11113 1985 1.34 1.8E-87
104 19 In1 Inhibitory neurons all PLD5 200150 26879 0.95 9.8E-81
104 19 In1 Inhibitory neurons all CCK 885 1569 1.25 5.07E-79
104 19 In1 Inhibitory neurons all NFIX 4784 7788 1.41 4.94E-75
104 19 In1 Inhibitory neurons all NR3C2 4306 7979 1.12 6.99E-72
104 19 In1 Inhibitory neurons all CNR1 1268 2159 0.99 1.75E-71
104 19 In1 Inhibitory neurons all MARCHF1 55016 26077 0.93 1.61E-70
104 19 In1 Inhibitory neurons all PLCE1 51196 17175 1.85 4.06E-68
104 19 In1 Inhibitory neurons all SLC24A3 57419 10977 1.05 2.38E-67
104 19 In1 Inhibitory neurons all ROBO1 6091 10249 0.58 1.34E-66
104 19 In1 Inhibitory neurons all NELL2 4753 7751 1.42 1.44E-64
104 19 In1 Inhibitory neurons all TRMT9B 57604 26725 1.31 1.77E-63
104 19 In1 Inhibitory neurons all NFIB 4781 7785 0.59 4.5E-62
104 19 In1 Inhibitory neurons all SEMA6D 80031 16770 1.3 2.63E-61
104 19 In1 Inhibitory neurons all CRIM1 51232 2359 1.69 6.24E-61
104 19 In1 Inhibitory neurons all DCLK1 9201 2700 0.88 3.7E-60
104 19 In1 Inhibitory neurons all HIPK2 28996 14402 1.45 9.78E-60
104 19 In1 Inhibitory neurons all CACNB2 783 1402 0.71 1.7E-59
104 19 In1 Inhibitory neurons all GRID2 2895 4576 0.53 2.76E-57
104 19 In1 Inhibitory neurons all AK5 26289 365 1.02 2.13E-56
104 19 In1 Inhibitory neurons all CLVS1 157807 23139 1.15 7.7E-54
104 19 In1 Inhibitory neurons all PIK3R1 5295 8979 1.31 9.85E-54
104 19 In1 Inhibitory neurons all EPHA4 2043 3388 1.36 1.32E-53
104 19 In1 Inhibitory neurons all SORCS3 22986 16699 1.01 1.88E-53
104 19 In1 Inhibitory neurons all DOCK10 55619 23479 0.74 2.46E-53
104 19 In1 Inhibitory neurons all OLFM1 10439 17187 1.15 1.17E-51
104 19 In1 Inhibitory neurons all MAGI3 260425 29647 0.89 1.29E-51
104 19 In1 Inhibitory neurons all SOBP 55084 29256 0.91 1.83E-51
104 19 In1 Inhibitory neurons all CNTN3 5067 2173 1.23 1.5E-50
104 19 In1 Inhibitory neurons all NCAM1 4684 7656 0.65 2.13E-49
104 19 In1 Inhibitory neurons all CALN1 83698 13248 0.97 7.78E-49
104 19 In1 Inhibitory neurons all SHISA6 388336 34491 0.95 1.01E-48
104 19 In1 Inhibitory neurons all HTR1E 3354 5291 1.62 4.88E-48
104 19 In1 Inhibitory neurons all PTPRZ1 5803 9685 1.26 2.78E-47
104 19 In1 Inhibitory neurons all KCNMA1 3778 6284 0.68 5.76E-46
104 19 In1 Inhibitory neurons all ENC1 8507 3345 1.28 8.0E-46
104 19 In1 Inhibitory neurons all CNTNAP4 85445 18747 0.78 2.0E-45
104 19 In1 Inhibitory neurons all STARD13 90627 19164 1.31 2.67E-44
104 19 In1 Inhibitory neurons all LRRC39 127495 28228 1.46 6.11E-44
104 19 In1 Inhibitory neurons all PCSK2 5126 8744 0.73 9.74E-44
104 19 In1 Inhibitory neurons all NKAIN3 286183 26829 0.97 1.8E-43
104 19 In1 Inhibitory neurons all KCNH7 90134 18863 0.91 7.81E-43
104 19 In1 Inhibitory neurons all AP1S2 8905 560 1.05 7.59E-42
104 19 In1 Inhibitory neurons all PDE7B 27115 8792 1.33 5.31E-40
104 19 In1 Inhibitory neurons all CAMK4 814 1464 0.96 8.25E-39
104 19 In1 Inhibitory neurons all NR3C1 2908 7978 1.04 3.82E-37
104 19 In1 Inhibitory neurons all B3GAT1 27087 921 1.18 6.1E-36
104 19 In1 Inhibitory neurons all SLC35F3 148641 23616 1.15 4.62E-35
104 19 In1 Inhibitory neurons all EPHB1 2047 3392 1.47 3.89E-34
104 19 In1 Inhibitory neurons all CCDC85A 114800 29400 0.76 7.33E-34
104 19 In1 Inhibitory neurons all EDIL3 10085 3173 1.03 2.3E-33
104 19 In1 Inhibitory neurons all LARGE1 9215 6511 0.62 3.47E-32
104 19 In1 Inhibitory neurons all BRINP1 1620 2687 1 6.21E-32
104 19 In1 Inhibitory neurons all ANKRD30BL 554226 35167 0.64 1.81E-30
104 19 In1 Inhibitory neurons all GNG2 54331 4404 0.89 2.04E-30
104 19 In1 Inhibitory neurons all PLXNA4 91584 9102 0.72 3.42E-30
104 19 In1 Inhibitory neurons all NAALADL2 254827 23219 0.97 1.43E-29
104 19 In1 Inhibitory neurons all FOXN3 1112 1928 0.85 1.74E-29
104 19 In1 Inhibitory neurons all ARHGAP21 57584 23725 0.83 4.01E-29
104 19 In1 Inhibitory neurons all ZBTB16 7704 12930 0.73 7.37E-29
104 19 In1 Inhibitory neurons all EGFR 1956 3236 0.63 1.43E-28
104 19 In1 Inhibitory neurons all CNKSR2 22866 19701 0.84 2.63E-28
104 19 In1 Inhibitory neurons all HYDIN 54768 19368 0.9 2.09E-27
104 19 In1 Inhibitory neurons all KCNQ5 56479 6299 0.61 2.14E-27
104 19 In1 Inhibitory neurons all MARCKSL1 65108 7142 1.24 4.41E-27
104 19 In1 Inhibitory neurons all OSBPL1A 114876 16398 0.76 5.42E-27
104 19 In1 Inhibitory neurons all LCORL 254251 30776 1.05 6.25E-27
104 19 In1 Inhibitory neurons all STIM1 6786 11386 1.14 2.62E-26
104 19 In1 Inhibitory neurons all CPE 1363 2303 0.91 1.3E-25
104 19 In1 Inhibitory neurons all RERG 85004 15980 0.88 1.9E-25
104 19 In1 Inhibitory neurons all MCC 4163 6935 1.16 5.23E-25
104 19 In1 Inhibitory neurons all CACNA1D 776 1391 0.7 7.42E-25
104 19 In1 Inhibitory neurons all SYT17 51760 24119 0.89 2.69E-24
104 19 In1 Inhibitory neurons all SH3D19 152503 30418 1.12 1.06E-23
104 19 In1 Inhibitory neurons all ANO4 121601 23837 0.54 2.02E-23
104 19 In1 Inhibitory neurons all COBL 23242 22199 0.57 8.94E-23
104 19 In1 Inhibitory neurons all SCG2 7857 10575 0.81 2.41E-22
104 19 In1 Inhibitory neurons all DGKG 1608 2853 0.99 5.49E-22
104 19 In1 Inhibitory neurons all CLSTN2 64084 17448 1.43 6.26E-22
104 19 In1 Inhibitory neurons all REV3L 5980 9968 0.53 1.42E-21
104 19 In1 Inhibitory neurons all SUSD4 55061 25470 0.79 2.4E-21
104 19 In1 Inhibitory neurons all SORCS1 114815 16697 1.06 2.61E-21
104 19 In1 Inhibitory neurons all ARL4C 10123 698 0.7 2.87E-21
104 19 In1 Inhibitory neurons all GLRA2 2742 4327 0.98 3.45E-21
104 19 In1 Inhibitory neurons all PPM1H 57460 18583 0.87 2.43E-20
104 19 In1 Inhibitory neurons all CREG2 200407 14272 0.94 3.84E-20
104 19 In1 Inhibitory neurons all TTC28 23331 29179 0.55 3.29E-19
104 19 In1 Inhibitory neurons all PARM1 25849 24536 0.91 5.66E-19
104 19 In1 Inhibitory neurons all NCOA1 8648 7668 0.5 5.81E-19
104 19 In1 Inhibitory neurons all ENTPD3 956 3365 0.75 2.39E-18
104 19 In1 Inhibitory neurons all ARFGEF3 57221 21213 0.62 3.45E-18
104 19 In1 Inhibitory neurons all TTC39C 125488 26595 0.93 4.05E-18
104 19 In1 Inhibitory neurons all RPLP0 6175 10371 1.03 5.93E-18
104 19 In1 Inhibitory neurons all CPLX2 10814 2310 0.73 7.93E-18
104 19 In1 Inhibitory neurons all ROCK2 9475 10252 0.72 1.73E-17
104 19 In1 Inhibitory neurons all PRR16 51334 29654 0.66 2.15E-17
104 19 In1 Inhibitory neurons all PRUNE2 158471 25209 0.85 4.15E-17
104 19 In1 Inhibitory neurons all PPM1E 22843 19322 0.62 4.45E-17
104 19 In1 Inhibitory neurons all ATP2B1 490 814 0.55 8.31E-17
104 19 In1 Inhibitory neurons all SLC4A7 9497 11033 0.93 1.03E-16
104 19 In1 Inhibitory neurons all FHOD3 80206 26178 0.7 1.1E-16
104 19 In1 Inhibitory neurons all ZNF292 23036 18410 0.53 1.75E-16
104 19 In1 Inhibitory neurons all AFDN 4301 7137 0.68 3.31E-16
104 19 In1 Inhibitory neurons all RIPOR2 9750 13872 0.7 3.95E-16
104 19 In1 Inhibitory neurons all ATP9B 374868 13541 0.82 4.79E-16
104 19 In1 Inhibitory neurons all SYN3 8224 11496 0.5 7.35E-16
104 19 In1 Inhibitory neurons all BTBD11 121551 23844 0.56 1.51E-15
104 19 In1 Inhibitory neurons all PRKD1 5587 9407 0.59 2.19E-15
104 19 In1 Inhibitory neurons all NECAB1 64168 20983 0.68 8.51E-15
104 19 In1 Inhibitory neurons all NBL1 4681 7650 1 9.4E-15
104 19 In1 Inhibitory neurons all CCNI 10983 1595 0.64 4.89E-14
104 19 In1 Inhibitory neurons all SYT14 255928 23143 0.62 7.85E-14
104 19 In1 Inhibitory neurons all KCNJ3 3760 6264 0.52 1.42E-13
104 19 In1 Inhibitory neurons all PDE10A 10846 8772 0.57 2.5E-13
104 19 In1 Inhibitory neurons all PDE1C 5137 8776 0.62 3.25E-13
104 19 In1 Inhibitory neurons all PLCB4 5332 9059 0.62 1.0E-12
104 19 In1 Inhibitory neurons all VOPP1 81552 34518 0.76 1.18E-12
104 19 In1 Inhibitory neurons all CTTNBP2 83992 15679 0.67 1.59E-12
104 19 In1 Inhibitory neurons all ABL2 27 77 0.78 6.3E-12
104 19 In1 Inhibitory neurons all TXNRD1 7296 12437 0.62 7.24E-12
104 19 In1 Inhibitory neurons all NUAK1 9891 14311 0.79 9.92E-12
104 19 In1 Inhibitory neurons all NFIA 4774 7784 0.65 4.04E-11
104 19 In1 Inhibitory neurons all ANKH 56172 15492 0.57 5.52E-11
104 19 In1 Inhibitory neurons all RPL13 6137 10303 0.58 8.24E-11
104 19 In1 Inhibitory neurons all ARHGEF3 50650 683 0.79 1.16E-10
104 19 In1 Inhibitory neurons all ADRA1A 148 277 0.54 3.15E-10
104 19 In1 Inhibitory neurons all TMEM232 642987 37270 0.67 1.02E-9
104 19 In1 Inhibitory neurons all FBXW7 55294 16712 0.74 1.14E-9
104 19 In1 Inhibitory neurons all LARP1 23367 29531 0.57 3.19E-9
104 19 In1 Inhibitory neurons all ALCAM 214 400 0.74 3.8E-9
104 19 In1 Inhibitory neurons all CDH8 1006 1767 0.54 5.26E-9
104 19 In1 Inhibitory neurons all MBOAT2 129642 25193 0.58 9.66E-9
104 19 In1 Inhibitory neurons all ST8SIA5 29906 17827 0.67 2.88E-8
104 19 In1 Inhibitory neurons all RPL13A 23521 10304 0.62 6.22E-8
104 19 In1 Inhibitory neurons all REEP1 65055 25786 0.53 7.51E-8
104 19 In1 Inhibitory neurons all KIAA0319 9856 21580 0.67 1.23E-7
104 19 In1 Inhibitory neurons all RPL18 6141 10310 0.53 3.49E-7
104 19 In1 Inhibitory neurons all PARD3 56288 16051 0.52 4.51E-7
104 19 In1 Inhibitory neurons all RNF19A 25897 13432 0.66 4.61E-7
104 19 In1 Inhibitory neurons all ERO1B 56605 14355 0.55 2.6E-6
104 19 In1 Inhibitory neurons all RPS27A 6233 10417 0.53 6.43E-6
104 19 In1 Inhibitory neurons all MIPOL1 145282 21460 0.51 6.59E-6
104 19 In1 Inhibitory neurons all RPL10 6134 10298 0.54 6.86E-6
104 19 In1 Inhibitory neurons all DNAJC1 64215 20090 0.5 1.94E-5
104 19 In1 Inhibitory neurons all SORT1 6272 11186 0.67 2.12E-5
104 19 In1 Inhibitory neurons all ZFPM2 23414 16700 0.53 2.64E-5
104 19 In1 Inhibitory neurons all LRRC28 123355 28355 0.5 2.7E-5
104 19 In1 Inhibitory neurons all GTF2IRD1 9569 4661 0.62 2.73E-5
104 19 In1 Inhibitory neurons all RPS25 6230 10413 0.52 4.82E-5
104 19 In1 Inhibitory neurons all TNR 7143 11953 0.5 5.39E-5
104 19 In1 Inhibitory neurons all RPL28 6158 10330 0.54 6.32E-5
104 19 In1 Inhibitory neurons all SEPTIN3 55964 10750 0.51 7.36E-5
104 19 In1 Inhibitory neurons all NEK10 152110 18592 0.58 0.000104255670124
104 19 In1 Inhibitory neurons all TUSC3 7991 30242 0.61 0.000158485800997
104 19 In1 Inhibitory neurons all GNG7 2788 4410 0.53 0.000216259264832
104 19 In1 Inhibitory neurons all RPS8 6202 10441 0.64 0.000244219855321
104 19 In1 Inhibitory neurons all SPECC1 92521 30615 0.53 0.000252698561667
104 19 In1 Inhibitory neurons all GAB2 9846 14458 0.55 0.000320924103253
104 19 In1 Inhibitory neurons all SLC39A10 57181 20861 0.54 0.000543118694642
104 19 In1 Inhibitory neurons all DIAPH2 1730 2877 0.53 0.001068799554604
104 19 In1 Inhibitory neurons all EPS15L1 58513 24634 0.54 0.001130059039463
104 19 In1 Inhibitory neurons all OPHN1 4983 8148 0.51 0.001419932009431
104 19 In1 Inhibitory neurons all RPSA 3921 6502 0.55 0.001671334553378
104 19 In1 Inhibitory neurons all KIF2A 3796 6318 0.54 0.001964112063124
104 19 In1 Inhibitory neurons all DZIP1 22873 20908 0.66 0.003274363145781
104 19 In1 Inhibitory neurons all EEF2 1938 3214 0.5 0.003477716368152
104 19 In1 Inhibitory neurons all MRTFA 57591 14334 0.51 0.003592947994065
104 19 In1 Inhibitory neurons all DENND1B 163486 28404 0.59 0.004940534880876