Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:217
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 13 Ex5 Excitatory neurons all SLC44A5 204962 28524 1.42 0
104 13 Ex5 Excitatory neurons all KCND3 3752 6239 1.09 0
104 13 Ex5 Excitatory neurons all CTNNA2 1496 2510 0.93 0
104 13 Ex5 Excitatory neurons all COBLL1 22837 23571 3.25 0
104 13 Ex5 Excitatory neurons all SLC38A11 151258 26836 1.56 0
104 13 Ex5 Excitatory neurons all VWC2L 402117 37203 2.61 0
104 13 Ex5 Excitatory neurons all RARB 5915 9865 1.89 0
104 13 Ex5 Excitatory neurons all ALCAM 214 400 1.63 0
104 13 Ex5 Excitatory neurons all KCNAB1 7881 6228 1.48 0
104 13 Ex5 Excitatory neurons all GABRG1 2565 4086 3.68 0
104 13 Ex5 Excitatory neurons all INPP4B 8821 6075 1.13 0
104 13 Ex5 Excitatory neurons all TDO2 6999 11708 2.28 0
104 13 Ex5 Excitatory neurons all FSTL5 56884 21386 1.55 0
104 13 Ex5 Excitatory neurons all PLCXD3 345557 31822 2.57 0
104 13 Ex5 Excitatory neurons all EDIL3 10085 3173 1.11 0
104 13 Ex5 Excitatory neurons all SPOCK1 6695 11251 0.79 0
104 13 Ex5 Excitatory neurons all PTCHD4 442213 21345 1.55 0
104 13 Ex5 Excitatory neurons all KHDRBS2 202559 18114 0.65 0
104 13 Ex5 Excitatory neurons all TPBG 7162 12004 2.5 0
104 13 Ex5 Excitatory neurons all SLC35F1 222553 21483 0.91 0
104 13 Ex5 Excitatory neurons all POU6F2 11281 21694 1.24 0
104 13 Ex5 Excitatory neurons all PCLO 27445 13406 0.75 0
104 13 Ex5 Excitatory neurons all FOXP2 93986 13875 1.92 0
104 13 Ex5 Excitatory neurons all TBL1X 6907 11585 2.23 0
104 13 Ex5 Excitatory neurons all IL1RAPL2 26280 5997 2.5 0
104 13 Ex5 Excitatory neurons all UNC5D 137970 18634 0.72 0
104 13 Ex5 Excitatory neurons all TOX 9760 18988 2.07 0
104 13 Ex5 Excitatory neurons all ALDH1A1 216 402 3.11 0
104 13 Ex5 Excitatory neurons all RORB 6096 10259 1.7 0
104 13 Ex5 Excitatory neurons all SLC22A10 387775 18057 1.75 0
104 13 Ex5 Excitatory neurons all CNTN5 53942 2175 1.25 0
104 13 Ex5 Excitatory neurons all PAPSS2 9060 8604 2.83 0
104 13 Ex5 Excitatory neurons all TAFA2 338811 21589 1 0
104 13 Ex5 Excitatory neurons all GRIP1 23426 18708 1.43 0
104 13 Ex5 Excitatory neurons all KCNH5 27133 6254 1.43 0
104 13 Ex5 Excitatory neurons all RORA 6095 10258 0.91 0
104 13 Ex5 Excitatory neurons all CNTNAP4 85445 18747 1.63 0
104 13 Ex5 Excitatory neurons all DCC 1630 2701 2.1 0
104 13 Ex5 Excitatory neurons all TSHZ2 128553 13010 2.81 0
104 13 Ex5 Excitatory neurons all PDZRN4 29951 30552 0.89 6.71E-296
104 13 Ex5 Excitatory neurons all SPAG16 79582 23225 1.06 2.57E-275
104 13 Ex5 Excitatory neurons all SNTG1 54212 13740 0.5 3.92E-266
104 13 Ex5 Excitatory neurons all KLHL32 114792 21221 1.15 8.75E-265
104 13 Ex5 Excitatory neurons all TRHDE 29953 30748 0.89 7.82E-261
104 13 Ex5 Excitatory neurons all TSHZ3 57616 30700 1.24 2.97E-260
104 13 Ex5 Excitatory neurons all KIF16B 55614 15869 1.39 2.83E-253
104 13 Ex5 Excitatory neurons all HS3ST4 9951 5200 0.5 1.82E-251
104 13 Ex5 Excitatory neurons all FSTL4 23105 21389 0.78 1.89E-251
104 13 Ex5 Excitatory neurons all FNBP1L 54874 20851 1.38 3.38E-248
104 13 Ex5 Excitatory neurons all CLMP 79827 24039 1.84 3.62E-246
104 13 Ex5 Excitatory neurons all BCAR3 8412 973 1.92 1.2E-242
104 13 Ex5 Excitatory neurons all HS3ST2 9956 5195 1.12 7.8E-234
104 13 Ex5 Excitatory neurons all MARCKS 4082 6759 1.08 1.84E-226
104 13 Ex5 Excitatory neurons all TNNT2 7139 11949 1.54 1.21E-221
104 13 Ex5 Excitatory neurons all LRRN3 54674 17200 1.07 3.62E-216
104 13 Ex5 Excitatory neurons all CEMIP 57214 29213 1.26 1.94E-215
104 13 Ex5 Excitatory neurons all TMTC2 160335 25440 1.08 7.84E-215
104 13 Ex5 Excitatory neurons all ZMAT4 79698 25844 0.77 1.6E-214
104 13 Ex5 Excitatory neurons all BACH2 60468 14078 1.19 1.95E-213
104 13 Ex5 Excitatory neurons all FAP 2191 3590 1.86 8.1E-213
104 13 Ex5 Excitatory neurons all SPATS2L 26010 24574 0.84 2.01E-205
104 13 Ex5 Excitatory neurons all ADGRL2 23266 18582 0.52 2.98E-204
104 13 Ex5 Excitatory neurons all LRMP 4033 6690 1.55 3.47E-201
104 13 Ex5 Excitatory neurons all GABRG3 2567 4088 0.68 1.69E-199
104 13 Ex5 Excitatory neurons all FOXP1 27086 3823 0.54 1.81E-199
104 13 Ex5 Excitatory neurons all MYRIP 25924 19156 0.65 2.22E-199
104 13 Ex5 Excitatory neurons all TRMT9B 57604 26725 1.07 9.17E-199
104 13 Ex5 Excitatory neurons all SLC24A2 25769 10976 0.5 2.63E-196
104 13 Ex5 Excitatory neurons all ACOT11 26027 18156 1.42 8.71E-196
104 13 Ex5 Excitatory neurons all GREM2 64388 17655 1.78 1.05E-193
104 13 Ex5 Excitatory neurons all CXXC4 80319 24593 1.4 1.65E-193
104 13 Ex5 Excitatory neurons all KHDRBS3 10656 18117 0.52 1.25E-187
104 13 Ex5 Excitatory neurons all EPHA3 2042 3387 1.17 9.73E-184
104 13 Ex5 Excitatory neurons all PPFIBP1 8496 9249 0.71 4.06E-175
104 13 Ex5 Excitatory neurons all DNAJC1 64215 20090 0.88 3.57E-171
104 13 Ex5 Excitatory neurons all RHOBTB2 23221 18756 0.92 1.69E-169
104 13 Ex5 Excitatory neurons all NEUROD6 63974 13804 1.43 8.08E-163
104 13 Ex5 Excitatory neurons all PDE10A 10846 8772 0.8 4.44E-158
104 13 Ex5 Excitatory neurons all UBE2E3 10477 12479 0.79 3.95E-157
104 13 Ex5 Excitatory neurons all CCDC3 83643 23813 0.71 5.95E-157
104 13 Ex5 Excitatory neurons all PCDH11X 27328 8656 0.73 7.45E-157
104 13 Ex5 Excitatory neurons all ADAMTS19 171019 17111 1.06 7.62E-156
104 13 Ex5 Excitatory neurons all FAM189A1 23359 29075 0.8 1.55E-155
104 13 Ex5 Excitatory neurons all KCNQ3 3786 6297 0.52 4.06E-155
104 13 Ex5 Excitatory neurons all RXFP1 59350 19718 0.95 4.33E-154
104 13 Ex5 Excitatory neurons all CHSY3 337876 24293 0.52 4.47E-154
104 13 Ex5 Excitatory neurons all RANBP17 64901 14428 0.94 3.39E-153
104 13 Ex5 Excitatory neurons all MTHFD2L 441024 31865 1.24 4.38E-153
104 13 Ex5 Excitatory neurons all ASPH 444 757 0.84 1.59E-152
104 13 Ex5 Excitatory neurons all NUAK1 9891 14311 0.54 4.15E-151
104 13 Ex5 Excitatory neurons all SCN1B 6324 10586 0.74 2.85E-149
104 13 Ex5 Excitatory neurons all PTMA 5757 9623 0.61 7.68E-148
104 13 Ex5 Excitatory neurons all KIAA0319 9856 21580 0.85 1.07E-144
104 13 Ex5 Excitatory neurons all ZMYND8 23613 9397 0.55 2.08E-143
104 13 Ex5 Excitatory neurons all ATP8B1 5205 3706 1.09 4.89E-141
104 13 Ex5 Excitatory neurons all ITPK1 3705 6177 0.69 5.28E-140
104 13 Ex5 Excitatory neurons all NAPEPLD 222236 21683 0.75 1.82E-138
104 13 Ex5 Excitatory neurons all BMPER 168667 24154 0.67 3.27E-138
104 13 Ex5 Excitatory neurons all FARP1 10160 3591 0.76 4.66E-138
104 13 Ex5 Excitatory neurons all SLIT1 6585 11085 0.75 1.13E-133
104 13 Ex5 Excitatory neurons all ADCY2 108 233 0.55 1.83E-132
104 13 Ex5 Excitatory neurons all MLLT3 4300 7136 0.53 1.95E-128
104 13 Ex5 Excitatory neurons all GRM3 2913 4595 0.63 5.58E-127
104 13 Ex5 Excitatory neurons all PDZRN3 23024 17704 0.56 2.9E-124
104 13 Ex5 Excitatory neurons all COL6A1 1291 2211 1.15 9.31E-124
104 13 Ex5 Excitatory neurons all RP11-58C22.1 NULL 1.29 6.17E-123
104 13 Ex5 Excitatory neurons all ATG7 10533 16935 0.61 5.77E-114
104 13 Ex5 Excitatory neurons all CPNE9 151835 24336 1.22 5.99E-114
104 13 Ex5 Excitatory neurons all MAGI3 260425 29647 0.51 6.76E-111
104 13 Ex5 Excitatory neurons all GPR158 57512 23689 0.53 4.87E-109
104 13 Ex5 Excitatory neurons all GUCY1A1 2982 4685 1 5.7E-109
104 13 Ex5 Excitatory neurons all MGLL 11343 17038 0.79 1.35E-104
104 13 Ex5 Excitatory neurons all MAN2A1 4124 6824 0.76 1.85E-104
104 13 Ex5 Excitatory neurons all EPHA5 2044 3389 0.59 3.68E-104
104 13 Ex5 Excitatory neurons all UBE3D 90025 21381 0.78 2.78E-103
104 13 Ex5 Excitatory neurons all PCDH10 57575 13404 0.74 5.18E-103
104 13 Ex5 Excitatory neurons all IL1RAP 3556 5995 1.28 8.17E-102
104 13 Ex5 Excitatory neurons all IPCEF1 26034 21204 0.54 5.79E-100
104 13 Ex5 Excitatory neurons all CFAP221 200373 33720 0.82 2.48E-98
104 13 Ex5 Excitatory neurons all DPY19L1 23333 22205 0.85 4.64E-98
104 13 Ex5 Excitatory neurons all COL11A1 1301 2186 0.79 1.46E-93
104 13 Ex5 Excitatory neurons all SCG3 29106 13707 0.72 3.68E-92
104 13 Ex5 Excitatory neurons all CREB5 9586 16844 1.17 2.39E-91
104 13 Ex5 Excitatory neurons all VWC2 375567 30200 1.07 1.12E-90
104 13 Ex5 Excitatory neurons all NTN4 59277 13658 1 1.02E-89
104 13 Ex5 Excitatory neurons all DPY19L2 283417 19414 0.64 7.83E-85
104 13 Ex5 Excitatory neurons all CTNNB1 1499 2514 0.72 1.86E-84
104 13 Ex5 Excitatory neurons all MSRB3 253827 27375 0.95 2.17E-81
104 13 Ex5 Excitatory neurons all NMT2 9397 7858 0.62 2.65E-81
104 13 Ex5 Excitatory neurons all PAG1 55824 30043 0.88 2.84E-81
104 13 Ex5 Excitatory neurons all GSG1L 146395 28283 0.72 4.59E-81
104 13 Ex5 Excitatory neurons all TTC9B 148014 26395 0.64 6.33E-80
104 13 Ex5 Excitatory neurons all CDHR3 222256 26308 0.92 4.4E-78
104 13 Ex5 Excitatory neurons all SND1 27044 30646 0.64 5.58E-78
104 13 Ex5 Excitatory neurons all NEO1 4756 7754 0.7 1.48E-76
104 13 Ex5 Excitatory neurons all STAMBPL1 57559 24105 0.66 7.19E-75
104 13 Ex5 Excitatory neurons all VPS41 27072 12713 0.57 1.79E-74
104 13 Ex5 Excitatory neurons all ST3GAL6 10402 18080 0.8 2.55E-74
104 13 Ex5 Excitatory neurons all RSPO2 340419 28583 0.63 3.83E-72
104 13 Ex5 Excitatory neurons all FHL1 2273 3702 0.67 1.12E-70
104 13 Ex5 Excitatory neurons all NEK11 79858 18593 0.74 1.86E-70
104 13 Ex5 Excitatory neurons all MXI1 4601 7534 0.58 4.47E-67
104 13 Ex5 Excitatory neurons all KIAA1958 158405 23427 0.7 6.64E-67
104 13 Ex5 Excitatory neurons all TSPAN13 27075 21643 0.53 1.34E-66
104 13 Ex5 Excitatory neurons all GABRA5 2558 4079 0.68 4.21E-65
104 13 Ex5 Excitatory neurons all C9orf72 203228 28337 0.86 2.0E-63
104 13 Ex5 Excitatory neurons all LPGAT1 9926 28985 0.62 3.96E-63
104 13 Ex5 Excitatory neurons all SMAP1 60682 19651 0.51 5.82E-63
104 13 Ex5 Excitatory neurons all LRRN1 57633 20980 0.87 1.74E-62
104 13 Ex5 Excitatory neurons all HPCA 3208 5144 0.53 1.73E-60
104 13 Ex5 Excitatory neurons all ALS2 57679 443 0.65 4.91E-60
104 13 Ex5 Excitatory neurons all FAM161A 84140 25808 0.85 5.54E-60
104 13 Ex5 Excitatory neurons all SGPL1 8879 10817 0.85 8.6E-60
104 13 Ex5 Excitatory neurons all PLEKHG1 57480 20884 1.08 4.71E-59
104 13 Ex5 Excitatory neurons all CENPC 1060 1854 0.56 1.31E-55
104 13 Ex5 Excitatory neurons all CNTRL 11064 1858 0.92 1.51E-55
104 13 Ex5 Excitatory neurons all ZDHHC17 23390 18412 0.53 1.36E-53
104 13 Ex5 Excitatory neurons all RNLS 55328 25641 0.63 4.32E-53
104 13 Ex5 Excitatory neurons all CD200 4345 7203 0.57 6.97E-53
104 13 Ex5 Excitatory neurons all TM7SF3 51768 23049 0.67 7.2E-52
104 13 Ex5 Excitatory neurons all LGI1 9211 6572 0.66 1.49E-51
104 13 Ex5 Excitatory neurons all CCDC102B 79839 26295 0.7 3.82E-51
104 13 Ex5 Excitatory neurons all NRSN1 140767 17881 0.54 1.69E-49
104 13 Ex5 Excitatory neurons all SMARCC1 6599 11104 0.69 2.12E-49
104 13 Ex5 Excitatory neurons all MB21D2 151963 30438 0.81 1.52E-46
104 13 Ex5 Excitatory neurons all FAM78B 149297 13495 0.57 1.77E-46
104 13 Ex5 Excitatory neurons all C5orf30 90355 25052 0.64 5.61E-45
104 13 Ex5 Excitatory neurons all FCHSD2 9873 29114 0.5 1.1E-44
104 13 Ex5 Excitatory neurons all NAP1L5 266812 19968 0.51 1.68E-44
104 13 Ex5 Excitatory neurons all S100A6 6277 10496 0.59 1.8E-44
104 13 Ex5 Excitatory neurons all GIPC2 54810 18177 0.5 4.16E-44
104 13 Ex5 Excitatory neurons all TCF7L2 6934 11641 0.7 3.27E-43
104 13 Ex5 Excitatory neurons all BCAT1 586 976 0.72 1.89E-41
104 13 Ex5 Excitatory neurons all THUMPD2 80745 14890 0.79 2.22E-41
104 13 Ex5 Excitatory neurons all CTNNA3 29119 2511 0.5 3.09E-41
104 13 Ex5 Excitatory neurons all GLIS1 148979 29525 0.78 9.43E-41
104 13 Ex5 Excitatory neurons all CEP192 55125 25515 0.54 1.85E-40
104 13 Ex5 Excitatory neurons all ST6GAL2 84620 10861 0.59 3.93E-40
104 13 Ex5 Excitatory neurons all HSPA1A 3303 5232 0.59 7.59E-37
104 13 Ex5 Excitatory neurons all KIAA1549 57670 22219 0.53 2.27E-35
104 13 Ex5 Excitatory neurons all TMEM145 284339 26912 0.53 3.27E-35
104 13 Ex5 Excitatory neurons all CTNNA1 1495 2509 0.65 3.63E-35
104 13 Ex5 Excitatory neurons all MYO5C 55930 7604 0.74 6.95E-35
104 13 Ex5 Excitatory neurons all LGALS8 3964 6569 0.57 3.37E-34
104 13 Ex5 Excitatory neurons all CCDC136 64753 22225 0.62 4.51E-34
104 13 Ex5 Excitatory neurons all CEP63 80254 25815 0.58 4.74E-34
104 13 Ex5 Excitatory neurons all BBS7 55212 18758 0.52 9.04E-34
104 13 Ex5 Excitatory neurons all NME9 347736 21343 0.65 4.39E-33
104 13 Ex5 Excitatory neurons all GPLD1 2822 4459 0.67 1.32E-32
104 13 Ex5 Excitatory neurons all USP39 10713 20071 0.51 1.56E-32
104 13 Ex5 Excitatory neurons all CARNMT1 138199 23435 0.55 2.83E-32
104 13 Ex5 Excitatory neurons all KIAA1324L 222223 21945 0.7 9.95E-32
104 13 Ex5 Excitatory neurons all ARL4C 10123 698 0.51 1.07E-31
104 13 Ex5 Excitatory neurons all APPL2 55198 18242 0.61 1.37E-31
104 13 Ex5 Excitatory neurons all CCDC138 165055 26531 0.53 3.21E-31
104 13 Ex5 Excitatory neurons all CNIH3 149111 26802 0.57 4.31E-31
104 13 Ex5 Excitatory neurons all LRRTM2 26045 19409 0.56 6.22E-31
104 13 Ex5 Excitatory neurons all UHRF2 115426 12557 0.57 8.83E-31
104 13 Ex5 Excitatory neurons all PTBP3 9991 10253 0.6 1.52E-30
104 13 Ex5 Excitatory neurons all TANK 10010 11562 0.51 6.13E-30
104 13 Ex5 Excitatory neurons all HOOK2 29911 19885 0.54 1.82E-29
104 13 Ex5 Excitatory neurons all ERO1B 56605 14355 0.61 3.05E-29
104 13 Ex5 Excitatory neurons all UPF3B 65109 20439 0.57 7.11E-29
104 13 Ex5 Excitatory neurons all ANKS6 203286 26724 0.59 3.76E-28
104 13 Ex5 Excitatory neurons all ST5 6764 11350 0.62 1.91E-27
104 13 Ex5 Excitatory neurons all EML4 27436 1316 0.61 9.05E-27
104 13 Ex5 Excitatory neurons all DENND4C 55667 26079 0.54 2.56E-26
104 13 Ex5 Excitatory neurons all NUP160 23279 18017 0.61 4.84E-26
104 13 Ex5 Excitatory neurons all JADE1 79960 30027 0.51 1.37E-24
104 13 Ex5 Excitatory neurons all SLC8A3 6547 11070 0.52 4.24E-24
104 13 Ex5 Excitatory neurons all NR2C1 7181 7971 0.53 6.33E-24
104 13 Ex5 Excitatory neurons all USP45 85015 20080 0.55 7.78E-22
104 13 Ex5 Excitatory neurons all TXNDC16 57544 19965 0.52 1.13E-21
104 13 Ex5 Excitatory neurons all KLHL8 57563 18644 0.56 3.43E-19
104 13 Ex5 Excitatory neurons all HMGXB4 10042 5003 0.54 9.64E-19
104 13 Ex5 Excitatory neurons all PTPN14 5784 9647 0.54 2.77E-17
104 13 Ex5 Excitatory neurons all WDSUB1 151525 26697 0.51 4.03E-14