Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:207
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 11 Ex3 Excitatory neurons all GRIK3 2899 4581 1.95 0
104 11 Ex3 Excitatory neurons all NFIA 4774 7784 1.81 0
104 11 Ex3 Excitatory neurons all AK5 26289 365 0.77 0
104 11 Ex3 Excitatory neurons all PRRX1 5396 9142 2.77 0
104 11 Ex3 Excitatory neurons all B3GALT2 8707 917 1.26 0
104 11 Ex3 Excitatory neurons all ESRRG 2104 3474 1.06 0
104 11 Ex3 Excitatory neurons all SLC35F3 148641 23616 1.29 0
104 11 Ex3 Excitatory neurons all CTNNA2 1496 2510 1.18 0
104 11 Ex3 Excitatory neurons all DPP10 57628 20823 0.6 0
104 11 Ex3 Excitatory neurons all LRP1B 53353 6693 1.09 0
104 11 Ex3 Excitatory neurons all FIGN 55137 13285 1.44 0
104 11 Ex3 Excitatory neurons all TMEFF2 23671 11867 0.98 0
104 11 Ex3 Excitatory neurons all CNTN4 152330 2174 0.87 0
104 11 Ex3 Excitatory neurons all GBE1 2632 4180 2.04 0
104 11 Ex3 Excitatory neurons all PEX5L 51555 30024 0.8 0
104 11 Ex3 Excitatory neurons all UNC5C 8633 12569 0.99 0
104 11 Ex3 Excitatory neurons all DCHS2 54798 23111 2.13 0
104 11 Ex3 Excitatory neurons all RXFP1 59350 19718 1.02 0
104 11 Ex3 Excitatory neurons all CDH12 1010 1751 0.72 0
104 11 Ex3 Excitatory neurons all CDH6 1004 1765 1.55 0
104 11 Ex3 Excitatory neurons all ARHGEF28 64283 30322 1.39 0
104 11 Ex3 Excitatory neurons all MCTP1 79772 26183 1.26 0
104 11 Ex3 Excitatory neurons all HS3ST5 222537 19419 2.25 0
104 11 Ex3 Excitatory neurons all SLC35F1 222553 21483 0.95 0
104 11 Ex3 Excitatory neurons all THEMIS 387357 21569 3.43 0
104 11 Ex3 Excitatory neurons all MOXD1 26002 21063 1.2 0
104 11 Ex3 Excitatory neurons all POU6F2 11281 21694 0.91 0
104 11 Ex3 Excitatory neurons all SEMA3A 10371 10723 1.6 0
104 11 Ex3 Excitatory neurons all ZNF804B 219578 21958 1.44 0
104 11 Ex3 Excitatory neurons all DMD 1756 2928 0.65 0
104 11 Ex3 Excitatory neurons all SGCZ 137868 14075 1.28 0
104 11 Ex3 Excitatory neurons all CSGALNACT1 55790 24290 1.09 0
104 11 Ex3 Excitatory neurons all NRG1 3084 7997 0.92 0
104 11 Ex3 Excitatory neurons all CNTNAP3 79937 13834 1.44 0
104 11 Ex3 Excitatory neurons all PLXDC2 84898 21013 0.95 0
104 11 Ex3 Excitatory neurons all SOX5 6660 11201 1.53 0
104 11 Ex3 Excitatory neurons all PDZRN4 29951 30552 1.75 0
104 11 Ex3 Excitatory neurons all TMEM233 387890 37219 2.91 0
104 11 Ex3 Excitatory neurons all B3GLCT 145173 20207 1.29 0
104 11 Ex3 Excitatory neurons all DACH1 1602 2663 1.41 0
104 11 Ex3 Excitatory neurons all PRKD1 5587 9407 1.12 0
104 11 Ex3 Excitatory neurons all ISLR 3671 6133 2.38 0
104 11 Ex3 Excitatory neurons all HS3ST2 9956 5195 1.5 0
104 11 Ex3 Excitatory neurons all MYO1D 4642 7598 1.03 0
104 11 Ex3 Excitatory neurons all SLC39A11 201266 14463 1.36 0
104 11 Ex3 Excitatory neurons all SSTR2 6752 11331 1.11 0
104 11 Ex3 Excitatory neurons all RIT2 6014 10017 1.28 0
104 11 Ex3 Excitatory neurons all NCAM2 4685 7657 1.14 0
104 11 Ex3 Excitatory neurons all CLSTN2 64084 17448 0.77 7.05e-305
104 11 Ex3 Excitatory neurons all KIAA1958 158405 23427 1.15 3.15e-302
104 11 Ex3 Excitatory neurons all FSTL5 56884 21386 0.84 5.33e-286
104 11 Ex3 Excitatory neurons all SEC24D 9871 10706 1.11 2.37e-285
104 11 Ex3 Excitatory neurons all ANKRD30B 374860 24165 1.34 1.77e-278
104 11 Ex3 Excitatory neurons all GALNT14 79623 22946 1.13 1.82e-275
104 11 Ex3 Excitatory neurons all SWAP70 23075 17070 1.62 1.98e-272
104 11 Ex3 Excitatory neurons all KCNT2 343450 18866 0.93 4.52e-272
104 11 Ex3 Excitatory neurons all CNTN6 27255 2176 1.26 2.45e-271
104 11 Ex3 Excitatory neurons all ARHGAP18 93663 21035 1.31 3.72e-270
104 11 Ex3 Excitatory neurons all NELL1 4745 7750 0.75 4.65e-270
104 11 Ex3 Excitatory neurons all DGKG 1608 2853 0.7 9.03e-269
104 11 Ex3 Excitatory neurons all PTPRK 5796 9674 0.7 4.37e-267
104 11 Ex3 Excitatory neurons all ITGB8 3696 6163 1.04 2.6e-266
104 11 Ex3 Excitatory neurons all INPP4B 8821 6075 0.74 8.9e-265
104 11 Ex3 Excitatory neurons all RUNX1T1 862 1535 0.82 8.49e-261
104 11 Ex3 Excitatory neurons all SORCS1 114815 16697 0.71 5.52e-257
104 11 Ex3 Excitatory neurons all IL12RB2 3595 5972 1.2 3.75e-256
104 11 Ex3 Excitatory neurons all SYNJ2 8871 11504 0.81 1.62e-250
104 11 Ex3 Excitatory neurons all KCTD16 57528 29244 0.58 7.76e-250
104 11 Ex3 Excitatory neurons all SH3D19 152503 30418 0.99 1.87e-245
104 11 Ex3 Excitatory neurons all ROBO1 6091 10249 0.73 2.11e-243
104 11 Ex3 Excitatory neurons all TRIM36 55521 16280 1.03 6.46e-241
104 11 Ex3 Excitatory neurons all FRMD6 122786 19839 1.21 7.29e-241
104 11 Ex3 Excitatory neurons all CNTNAP3B 728577 32035 0.94 2.88e-239
104 11 Ex3 Excitatory neurons all STIM1 6786 11386 0.89 3e-236
104 11 Ex3 Excitatory neurons all IGSF21 84966 28246 0.77 1.29e-235
104 11 Ex3 Excitatory neurons all GRIA1 2890 4571 0.6 1.22e-233
104 11 Ex3 Excitatory neurons all SPOCK1 6695 11251 0.62 5.09e-232
104 11 Ex3 Excitatory neurons all NETO1 81832 13823 0.72 7.91e-232
104 11 Ex3 Excitatory neurons all TENM3 55714 29944 0.79 2.54e-230
104 11 Ex3 Excitatory neurons all CHN2 1124 1944 0.66 1.04e-229
104 11 Ex3 Excitatory neurons all IGFBP5 3488 5474 0.92 6.24e-228
104 11 Ex3 Excitatory neurons all CRIM1 51232 2359 0.8 7.04e-228
104 11 Ex3 Excitatory neurons all SAMD5 389432 21180 1.18 6.98e-225
104 11 Ex3 Excitatory neurons all IKZF2 22807 13177 1.07 1.23e-224
104 11 Ex3 Excitatory neurons all PDGFC 56034 8801 1.01 1.96e-223
104 11 Ex3 Excitatory neurons all GRIK4 2900 4582 0.88 6.06e-220
104 11 Ex3 Excitatory neurons all PCDH17 27253 14267 0.73 6.86e-217
104 11 Ex3 Excitatory neurons all TRPC5 7224 12337 0.86 1.71e-212
104 11 Ex3 Excitatory neurons all ZEB2 9839 14881 0.65 3.31e-210
104 11 Ex3 Excitatory neurons all MMP16 4325 7162 0.57 8.35e-209
104 11 Ex3 Excitatory neurons all BRINP3 339479 22393 0.79 5.61e-208
104 11 Ex3 Excitatory neurons all CPNE9 151835 24336 0.96 6.96e-208
104 11 Ex3 Excitatory neurons all CDH9 1007 1768 0.59 6.18e-206
104 11 Ex3 Excitatory neurons all CDH2 1000 1759 0.65 5.07e-204
104 11 Ex3 Excitatory neurons all ARHGAP12 94134 16348 0.98 5.71e-203
104 11 Ex3 Excitatory neurons all GNG2 54331 4404 0.64 6.66e-201
104 11 Ex3 Excitatory neurons all EFNA5 1946 3225 0.53 9.13e-198
104 11 Ex3 Excitatory neurons all ADAMTS3 9508 219 0.82 1.19e-197
104 11 Ex3 Excitatory neurons all MMD 23531 7153 0.83 1.52e-196
104 11 Ex3 Excitatory neurons all ID2 3398 5361 0.73 2.19e-196
104 11 Ex3 Excitatory neurons all CEMIP2 23670 11869 0.77 3.98e-196
104 11 Ex3 Excitatory neurons all MBOAT2 129642 25193 0.82 4.27e-196
104 11 Ex3 Excitatory neurons all MEIS3 56917 29537 0.67 6.2e-196
104 11 Ex3 Excitatory neurons all LY6H 4062 6728 0.63 7.64e-196
104 11 Ex3 Excitatory neurons all FAR2 55711 25531 0.76 9.35e-196
104 11 Ex3 Excitatory neurons all COL24A1 255631 20821 0.92 1.38e-195
104 11 Ex3 Excitatory neurons all CCK 885 1569 0.6 1.15e-194
104 11 Ex3 Excitatory neurons all PAPSS1 9061 8603 0.78 3.45e-194
104 11 Ex3 Excitatory neurons all SFMBT2 57713 20256 0.92 1.56e-192
104 11 Ex3 Excitatory neurons all CDH13 1012 1753 0.64 5.45e-192
104 11 Ex3 Excitatory neurons all TENM4 26011 29945 0.61 2.32e-191
104 11 Ex3 Excitatory neurons all FMNL2 114793 18267 0.57 3.44e-191
104 11 Ex3 Excitatory neurons all KAZN 23254 29173 0.6 5.63e-188
104 11 Ex3 Excitatory neurons all MGST1 4257 7061 1.03 8.41e-188
104 11 Ex3 Excitatory neurons all BCL11B 64919 13222 0.62 3.41e-186
104 11 Ex3 Excitatory neurons all MAGI3 260425 29647 0.63 6.09e-182
104 11 Ex3 Excitatory neurons all GRM1 2911 4593 0.61 2.05e-179
104 11 Ex3 Excitatory neurons all SNTB2 6645 11169 0.76 2.55e-178
104 11 Ex3 Excitatory neurons all TESPA1 9840 29109 0.52 1.15e-175
104 11 Ex3 Excitatory neurons all SNTG2 54221 13741 1.09 5.57e-175
104 11 Ex3 Excitatory neurons all PCSK2 5126 8744 0.52 1.13e-174
104 11 Ex3 Excitatory neurons all TMEM132D 121256 29411 0.5 1.22e-166
104 11 Ex3 Excitatory neurons all DOK6 220164 28301 0.53 8.26e-162
104 11 Ex3 Excitatory neurons all UGP2 7360 12527 0.62 6.97e-161
104 11 Ex3 Excitatory neurons all COL19A1 1310 2196 0.58 3.29e-160
104 11 Ex3 Excitatory neurons all CDYL2 124359 23030 0.68 2.07e-158
104 11 Ex3 Excitatory neurons all NT5DC1 221294 21556 0.79 1.97e-157
104 11 Ex3 Excitatory neurons all GPATCH2 55105 25499 0.7 2.27e-157
104 11 Ex3 Excitatory neurons all TIMP3 7078 11822 0.93 3.83e-155
104 11 Ex3 Excitatory neurons all ZDHHC2 51201 18469 0.88 3.57e-154
104 11 Ex3 Excitatory neurons all SYT4 6860 11512 0.54 1.09e-153
104 11 Ex3 Excitatory neurons all IFI6 2537 4054 0.69 2.39e-153
104 11 Ex3 Excitatory neurons all RASGRP1 10125 9878 0.65 2.82e-153
104 11 Ex3 Excitatory neurons all PPP1R14C 81706 14952 0.85 6.49e-152
104 11 Ex3 Excitatory neurons all VPS13D 55187 23595 0.61 9.07e-150
104 11 Ex3 Excitatory neurons all CLVS2 134829 23046 0.59 1.36e-146
104 11 Ex3 Excitatory neurons all SLC26A4 5172 8818 0.84 2.62e-144
104 11 Ex3 Excitatory neurons all NDRG1 10397 7679 0.85 3.87e-143
104 11 Ex3 Excitatory neurons all MAN2A1 4124 6824 0.62 3.92e-143
104 11 Ex3 Excitatory neurons all SHC3 53358 18181 0.55 4.17e-143
104 11 Ex3 Excitatory neurons all AKAP13 11214 371 0.64 8.09e-143
104 11 Ex3 Excitatory neurons all CAST 831 1515 0.68 3.74e-142
104 11 Ex3 Excitatory neurons all RASA2 5922 9872 0.6 6.68e-142
104 11 Ex3 Excitatory neurons all ART3 419 725 0.68 6.9e-142
104 11 Ex3 Excitatory neurons all MAPK3 5595 6877 0.58 1.72e-140
104 11 Ex3 Excitatory neurons all DDAH1 23576 2715 0.51 1.27e-139
104 11 Ex3 Excitatory neurons all TMEM155 132332 26418 0.7 8.83e-139
104 11 Ex3 Excitatory neurons all DNAH14 127602 2945 0.64 1.59e-137
104 11 Ex3 Excitatory neurons all JAK2 3717 6192 0.59 4.69e-136
104 11 Ex3 Excitatory neurons all SYNPO2 171024 17732 0.54 5.52e-135
104 11 Ex3 Excitatory neurons all FRYL 285527 29127 0.6 1.27e-134
104 11 Ex3 Excitatory neurons all DHCR24 1718 2859 0.68 1.27e-133
104 11 Ex3 Excitatory neurons all CASD1 64921 16014 0.51 2.83e-133
104 11 Ex3 Excitatory neurons all SLC16A10 117247 17027 0.69 4.58e-133
104 11 Ex3 Excitatory neurons all CTXN1 404217 31108 0.56 1.16e-132
104 11 Ex3 Excitatory neurons all SNED1 25992 24696 0.51 3.2e-132
104 11 Ex3 Excitatory neurons all DCLK2 166614 19002 0.52 1.93e-131
104 11 Ex3 Excitatory neurons all COA6 388753 18025 0.84 2.85e-131
104 11 Ex3 Excitatory neurons all KCNMB4 27345 6289 0.51 4.6e-130
104 11 Ex3 Excitatory neurons all MYOM2 9172 7614 0.61 1.38e-129
104 11 Ex3 Excitatory neurons all EFHD2 79180 28670 0.57 2.46e-129
104 11 Ex3 Excitatory neurons all CCDC3 83643 23813 0.52 3.8e-129
104 11 Ex3 Excitatory neurons all EFNB2 1948 3227 0.58 1.92e-124
104 11 Ex3 Excitatory neurons all HRH1 3269 5182 0.73 9.91e-124
104 11 Ex3 Excitatory neurons all SURF4 6836 11476 0.53 2.8e-123
104 11 Ex3 Excitatory neurons all ST3GAL1 6482 10862 0.69 2.39e-122
104 11 Ex3 Excitatory neurons all SDK2 54549 19308 0.74 2.2e-121
104 11 Ex3 Excitatory neurons all TSHZ1 10194 10669 0.52 1.87e-120
104 11 Ex3 Excitatory neurons all GFRA2 2675 4244 0.59 5.88e-120
104 11 Ex3 Excitatory neurons all OTUD3 23252 29038 0.72 1.04e-119
104 11 Ex3 Excitatory neurons all IQGAP1 8826 6110 0.62 1.43e-119
104 11 Ex3 Excitatory neurons all ANXA4 307 542 0.84 1.45e-117
104 11 Ex3 Excitatory neurons all C5orf30 90355 25052 0.52 3.22e-117
104 11 Ex3 Excitatory neurons all STARD13 90627 19164 0.5 2.07e-114
104 11 Ex3 Excitatory neurons all RTN4RL2 349667 23053 0.6 3.17e-114
104 11 Ex3 Excitatory neurons all ANKMY2 57037 25370 0.6 1.31e-113
104 11 Ex3 Excitatory neurons all MSMO1 6307 10545 0.51 1.04e-112
104 11 Ex3 Excitatory neurons all PRELID2 153768 28306 0.6 2.19e-112
104 11 Ex3 Excitatory neurons all NBL1 4681 7650 0.58 7.22e-111
104 11 Ex3 Excitatory neurons all TNFRSF21 27242 13469 0.58 4.02e-110
104 11 Ex3 Excitatory neurons all CLEC2L 154790 21969 0.58 4.32e-109
104 11 Ex3 Excitatory neurons all SERPINF1 5176 8824 0.58 7.4e-108
104 11 Ex3 Excitatory neurons all DENND3 22898 29134 0.53 1.38e-105
104 11 Ex3 Excitatory neurons all NAPG 8774 7642 0.54 3.09e-105
104 11 Ex3 Excitatory neurons all HMGCS1 3157 5007 0.53 8.07e-105
104 11 Ex3 Excitatory neurons all NOS1AP 9722 16859 0.5 2.01e-104
104 11 Ex3 Excitatory neurons all PTCHD1 139411 26392 0.51 2.94e-99
104 11 Ex3 Excitatory neurons all GAB2 9846 14458 0.53 3.31e-98
104 11 Ex3 Excitatory neurons all DDN 23109 24458 0.52 4.65e-95
104 11 Ex3 Excitatory neurons all CDO1 1036 1795 0.56 4.76e-94
104 11 Ex3 Excitatory neurons all DNAJC2 27000 13192 0.58 6.68e-94
104 11 Ex3 Excitatory neurons all FRAS1 80144 19185 0.58 1.35e-93
104 11 Ex3 Excitatory neurons all TMEM150C 441027 37263 0.52 1.36e-93
104 11 Ex3 Excitatory neurons all ACTN2 88 164 0.53 4.24e-93
104 11 Ex3 Excitatory neurons all GATB 5188 8849 0.54 1.38e-91
104 11 Ex3 Excitatory neurons all PRSS23 11098 14370 0.62 3.04e-91
104 11 Ex3 Excitatory neurons all TESC 54997 26065 0.57 3.99e-91
104 11 Ex3 Excitatory neurons all PEG10 23089 14005 0.56 2.09e-89
104 11 Ex3 Excitatory neurons all OPRM1 4988 8156 0.59 4.99e-89
104 11 Ex3 Excitatory neurons all CACHD1 57685 29314 0.53 1.23e-84
104 11 Ex3 Excitatory neurons all LGMN 5641 9472 0.52 1.11e-82
104 11 Ex3 Excitatory neurons all ZNF438 220929 21029 0.53 1.22e-82
104 11 Ex3 Excitatory neurons all STX2 2054 3403 0.58 2.49e-82
104 11 Ex3 Excitatory neurons all NPIPB5 100132247 37233 0.55 4.17e-82
104 11 Ex3 Excitatory neurons all VRK1 7443 12718 0.52 4.54e-82
104 11 Ex3 Excitatory neurons all ZYX 7791 13200 0.5 3.89e-79
104 11 Ex3 Excitatory neurons all CEP70 80321 29972 0.53 1.19e-71