Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:52
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 10 Ex2 Excitatory neurons all KCNIP4 80333 30083 1.03 0
104 10 Ex2 Excitatory neurons all CSMD1 64478 14026 0.87 0
104 10 Ex2 Excitatory neurons all RBFOX1 54715 18222 0.66 0
104 10 Ex2 Excitatory neurons all CADM2 253559 29849 0.65 3.18E-212
104 10 Ex2 Excitatory neurons all ADGRB3 577 945 0.63 1.2E-206
104 10 Ex2 Excitatory neurons all LRRTM4 80059 19411 0.79 2.8E-206
104 10 Ex2 Excitatory neurons all DLG2 1740 2901 0.63 9.03E-199
104 10 Ex2 Excitatory neurons all TMEM108 66000 28451 0.51 5.54E-148
104 10 Ex2 Excitatory neurons all NRG3 10718 7999 0.57 1.8E-147
104 10 Ex2 Excitatory neurons all PCDH9 5101 8661 0.58 7.36E-140
104 10 Ex2 Excitatory neurons all STXBP5L 9515 30757 0.79 5.08E-131
104 10 Ex2 Excitatory neurons all RASGEF1B 153020 24881 1.54 2.6E-125
104 10 Ex2 Excitatory neurons all OPCML 4978 8143 0.6 9.04E-121
104 10 Ex2 Excitatory neurons all NRXN1 9378 8008 0.52 1.46E-117
104 10 Ex2 Excitatory neurons all PTPRD 5789 9668 0.59 2.07E-107
104 10 Ex2 Excitatory neurons all FAM155A 728215 33877 0.54 4.85E-101
104 10 Ex2 Excitatory neurons all PHYHIP 9796 16865 0.67 2.93E-99
104 10 Ex2 Excitatory neurons all IQCJ-SCHIP1 100505385 38842 0.74 8.83E-93
104 10 Ex2 Excitatory neurons all CNTNAP2 26047 13830 0.62 2.9E-92
104 10 Ex2 Excitatory neurons all DLGAP1 9229 2905 0.56 5.64E-86
104 10 Ex2 Excitatory neurons all MAGI2 9863 18957 0.65 1.1E-83
104 10 Ex2 Excitatory neurons all ADGRL2 23266 18582 0.54 3.68E-80
104 10 Ex2 Excitatory neurons all CACNA1A 773 1388 0.53 3.34E-65
104 10 Ex2 Excitatory neurons all PDZD2 23037 18486 0.52 1.59E-56
104 10 Ex2 Excitatory neurons all TENM2 57451 29943 0.77 1.6E-56
104 10 Ex2 Excitatory neurons all CNTN5 53942 2175 0.6 3.09E-55
104 10 Ex2 Excitatory neurons all RORA 6095 10258 0.52 2.67E-53
104 10 Ex2 Excitatory neurons all FLRT2 23768 3761 0.68 1.99E-49
104 10 Ex2 Excitatory neurons all KCNQ5 56479 6299 0.56 1.95E-45
104 10 Ex2 Excitatory neurons all TAFA2 338811 21589 0.56 6.51E-44
104 10 Ex2 Excitatory neurons all EPHA6 285220 19296 0.81 2.84E-41
104 10 Ex2 Excitatory neurons all NEGR1 257194 17302 0.5 3.59E-34
104 10 Ex2 Excitatory neurons all CDH12 1010 1751 0.56 5.71E-24
104 10 Ex2 Excitatory neurons all CNTNAP5 129684 18748 0.76 1.41E-21
104 10 Ex2 Excitatory neurons all SLC26A3 1811 3018 1.64 3.03E-20
104 10 Ex2 Excitatory neurons all SYN3 8224 11496 0.69 4.15E-19
104 10 Ex2 Excitatory neurons all CBLN2 147381 1544 1.05 3.04E-17
104 10 Ex2 Excitatory neurons all SLC8A1 6546 11068 0.5 6.33E-17
104 10 Ex2 Excitatory neurons all GRIN1 2902 4584 0.8 2.49E-16
104 10 Ex2 Excitatory neurons all DGKB 1607 2850 0.59 6.28E-13
104 10 Ex2 Excitatory neurons all HS6ST3 266722 19134 0.56 1.62E-12
104 10 Ex2 Excitatory neurons all LINGO2 158038 21207 0.65 3.22E-12
104 10 Ex2 Excitatory neurons all DHFR 1719 2861 1.63 6.79E-11
104 10 Ex2 Excitatory neurons all KCND2 3751 6238 0.95 9.53E-11
104 10 Ex2 Excitatory neurons all LRFN5 145581 20360 0.64 1.14E-10
104 10 Ex2 Excitatory neurons all LINGO1 84894 21205 0.99 1.48E-10
104 10 Ex2 Excitatory neurons all AGBL4 84871 25892 0.63 5.02E-10
104 10 Ex2 Excitatory neurons all GRIA4 2893 4574 0.81 1.05E-9
104 10 Ex2 Excitatory neurons all PLCB1 23236 15917 0.51 2.47E-9
104 10 Ex2 Excitatory neurons all ARPP21 10777 16968 0.81 4.01E-9
104 10 Ex2 Excitatory neurons all PCDH7 5099 8659 0.55 9.42E-9
104 10 Ex2 Excitatory neurons all SNTG1 54212 13740 0.57 0.002455678364363