Marker Genes

Dataset: Single-cell transcriptomic analysis of Alzheimer's disease

  • tissue: Prefrontal cortex
  • ontology: Brain
  • genotype: -
  • stage: Adult
  • treatment condition: WT, Alzheimers
  • cell/nucleus: Nuclei
  • pmid: 31042697
  • subset name: all
  • total genes: 17926
  • clustering: Fishers exact test
  • pseudotime: None
  • link:

Rows:33
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
104 1 Ast0 Astrocytes all NRXN1 9378 8008 0.59 1.13e-96
104 1 Ast0 Astrocytes all SLC1A2 6506 10940 0.54 3.77e-68
104 1 Ast0 Astrocytes all ZNF98 148198 13174 0.92 1.56e-29
104 1 Ast0 Astrocytes all ARHGAP24 83478 25361 0.66 3.3e-23
104 1 Ast0 Astrocytes all TENM2 57451 29943 0.59 1.02e-19
104 1 Ast0 Astrocytes all TMEM241 85019 31723 1.04 1.81e-19
104 1 Ast0 Astrocytes all CABLES1 91768 25097 0.6 3.51e-18
104 1 Ast0 Astrocytes all FTH1 2495 3976 0.6 6.15e-18
104 1 Ast0 Astrocytes all MMD2 221938 30133 0.8 4.16e-16
104 1 Ast0 Astrocytes all FRMD4A 55691 25491 0.77 1.34e-14
104 1 Ast0 Astrocytes all RERG 85004 15980 0.9 1.75e-14
104 1 Ast0 Astrocytes all GRIA2 2891 4572 0.6 2.05e-12
104 1 Ast0 Astrocytes all PIK3C2A 5286 8971 0.68 5.16e-12
104 1 Ast0 Astrocytes all LRRTM4 80059 19411 0.8 1.53e-11
104 1 Ast0 Astrocytes all ESRRG 2104 3474 0.6 8.22e-11
104 1 Ast0 Astrocytes all GRM3 2913 4595 0.67 1.36e-10
104 1 Ast0 Astrocytes all PAMR1 25891 24554 0.66 2.44e-10
104 1 Ast0 Astrocytes all EPHB1 2047 3392 0.63 8.34e-10
104 1 Ast0 Astrocytes all FAM184A 79632 20991 0.67 2.28e-09
104 1 Ast0 Astrocytes all ADAMTS17 170691 17109 0.69 3.47e-09
104 1 Ast0 Astrocytes all TMEM108 66000 28451 0.61 3.52e-09
104 1 Ast0 Astrocytes all KLHL32 114792 21221 0.6 5.22e-08
104 1 Ast0 Astrocytes all PLEKHA6 22874 17053 0.69 5.34e-07
104 1 Ast0 Astrocytes all OLFM2 93145 17189 0.75 6.39e-07
104 1 Ast0 Astrocytes all ANKDD1A 348094 28002 0.64 1.24e-06
104 1 Ast0 Astrocytes all PTPRG 5793 9671 0.5 1.79e-06
104 1 Ast0 Astrocytes all CHKA 1119 1937 0.58 6.36e-06
104 1 Ast0 Astrocytes all CIRBP 1153 1982 0.51 1.41e-05
104 1 Ast0 Astrocytes all WIF1 11197 18081 0.61 4.51e-05
104 1 Ast0 Astrocytes all SH3RF1 57630 17650 0.53 0.00027189105519
104 1 Ast0 Astrocytes all DPH6 89978 30543 0.5 0.000971373779484
104 1 Ast0 Astrocytes all ABI2 10152 24011 0.56 0.003515293138944
104 1 Ast0 Astrocytes all ATP2C1 27032 13211 0.55 0.005115348875503