Marker Genes
Dataset: Progressive Recruitment of Mesenchymal Progenitors Reveals a Time-Dependent Process of Cell Fate Acquisition in Mouse and Human Nephrogenesis
- tissue: Kidney
- ontology: Kidney
- genotype: -
- stage: Fetal
- treatment condition: WT
- cell/nucleus: Cells
- pmid: 29870722
- subset name: all
- total genes: Not reported
- clustering: Seurat, Gaussian Mixture Model
- pseudotime: Monocle 2
- link: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE112570
Rows:139
dataset id | cluster id | cluster name | cell type name | sample id | gene symbol | entrez geneid | species specific geneid |
avg log fc (?)
|
pct 1 | pct 2 | p value | padj |
---|---|---|---|---|---|---|---|---|---|---|---|---|
102 | 1 | NPC prolif. | all | HIST1H2AC | 8334 | 4733 | 0.58 | 0.53 | 0.36 | 1.45e-16 | 4.75e-12 | |
102 | 1 | NPC prolif. | all | IGFBP5 | 3488 | 5474 | 0.58 | 0.27 | 0.1 | 3.41e-22 | 1.12e-17 | |
102 | 1 | NPC prolif. | all | BST2 | 684 | 1119 | 0.51 | 0.94 | 0.84 | 2.61e-38 | 8.53e-34 | |
102 | 1 | NPC prolif. | all | ITM2C | 81618 | 6175 | 0.49 | 0.99 | 0.98 | 4.27e-55 | 1.4e-50 | |
102 | 1 | NPC prolif. | all | HIST2H2BE | 8349 | 4760 | 0.49 | 0.67 | 0.55 | 2.84e-15 | 9.28e-11 | |
102 | 1 | NPC prolif. | all | TNFRSF12A | 51330 | 18152 | 0.48 | 0.63 | 0.52 | 2.09e-14 | 6.84e-10 | |
102 | 1 | NPC prolif. | all | MFAP4 | 4239 | 7035 | 0.45 | 0.34 | 0.18 | 8.3e-18 | 2.72e-13 | |
102 | 1 | NPC prolif. | all | TPM1 | 7168 | 12010 | 0.43 | 0.9 | 0.81 | 9.56e-28 | 3.13e-23 | |
102 | 1 | NPC prolif. | all | MALAT1 | 378938 | 29665 | 0.37 | 1 | 1 | 7.09e-44 | 2.32e-39 | |
102 | 1 | NPC prolif. | all | CCK | 885 | 1569 | 0.35 | 0.17 | 0.03 | 2.08e-28 | 6.8e-24 | |
102 | 1 | NPC prolif. | all | LGALS1 | 3956 | 6561 | 0.35 | 0.48 | 0.39 | 2.69e-07 | 0.008797628451037 | |
102 | 1 | NPC prolif. | all | GPC3 | 2719 | 4451 | 0.34 | 0.99 | 0.96 | 6.98e-27 | 2.29e-22 | |
102 | 1 | NPC prolif. | all | TESC | 54997 | 26065 | 0.34 | 0.21 | 0.08 | 4.87e-15 | 1.59e-10 | |
102 | 1 | NPC prolif. | all | CIRBP | 1153 | 1982 | 0.34 | 1 | 0.99 | 1.28e-35 | 4.19e-31 | |
102 | 1 | NPC prolif. | all | PRXL2A | 84293 | 28651 | 0.33 | 0.85 | 0.79 | 7.78e-16 | 2.55e-11 | |
102 | 1 | NPC prolif. | all | KCNQ1OT1 | 10984 | 6295 | 0.32 | 0.43 | 0.38 | 1.36e-05 | 0.44 | |
102 | 1 | NPC prolif. | all | PHLDA1 | 22822 | 8933 | 0.32 | 0.3 | 0.27 | 0.005264602676002 | 1 | |
102 | 1 | NPC prolif. | all | TAGLN | 6876 | 11553 | 0.3 | 0.42 | 0.35 | 8.62e-05 | 1 | |
102 | 1 | NPC prolif. | all | LMOD1 | 25802 | 6647 | 0.29 | 0.25 | 0.16 | 7.23e-07 | 0.02 | |
102 | 1 | NPC prolif. | all | CDC42EP3 | 10602 | 16943 | 0.29 | 0.32 | 0.28 | 0.001259903799056 | 1 | |
102 | 1 | NPC prolif. | all | HIST1H2BD | 3017 | 4747 | 0.29 | 0.27 | 0.2 | 4.43e-05 | 1 | |
102 | 1 | NPC prolif. | all | NRXN1 | 9378 | 8008 | 0.29 | 0.28 | 0.15 | 1.24e-11 | 4.06e-07 | |
102 | 1 | NPC prolif. | all | PPP1CB | 5500 | 9282 | 0.29 | 0.59 | 0.59 | 6.59e-07 | 0.02 | |
102 | 1 | NPC prolif. | all | PDGFC | 56034 | 8801 | 0.28 | 0.48 | 0.44 | 3.65e-06 | 0.11 | |
102 | 1 | NPC prolif. | all | MFAP2 | 4237 | 7033 | 0.28 | 0.55 | 0.52 | 1.09e-06 | 0.03 | |
102 | 1 | NPC prolif. | all | IGF2 | 3481 | 5466 | 0.28 | 0.94 | 0.87 | 8.49e-16 | 2.78e-11 | |
102 | 1 | NPC prolif. | all | HIST1H2BK | 85236 | 13954 | 0.28 | 0.41 | 0.37 | 0.002783224891278 | 1 | |
102 | 1 | NPC prolif. | all | GMDS | 2762 | 4369 | 0.28 | 0.34 | 0.29 | 0.000125909769329 | 1 | |
102 | 1 | NPC prolif. | all | FHL2 | 2274 | 3703 | 0.27 | 0.45 | 0.4 | 6.51e-05 | 1 | |
102 | 1 | NPC prolif. | all | MEST | 4232 | 7028 | 0.27 | 0.97 | 0.96 | 2.39e-18 | 7.84e-14 | |
102 | 1 | NPC prolif. | all | NREP | 9315 | 16834 | 0.27 | 0.82 | 0.84 | 9.77e-11 | 3.2e-06 | |
102 | 1 | NPC prolif. | all | COX7A2L | 9167 | 2289 | 0.26 | 0.85 | 0.86 | 3.05e-13 | 9.99e-09 | |
102 | 1 | NPC prolif. | all | TUBA1A | 7846 | 20766 | 0.26 | 0.99 | 0.97 | 5.9e-15 | 1.93e-10 | |
102 | 1 | NPC prolif. | all | UNC5B-AS1 | 728978 | 45096 | 0.25 | 0.35 | 0.3 | 0.000682812433625 | 1 | |
102 | 1 | NPC prolif. | all | UBE2E3 | 10477 | 12479 | 0.25 | 0.84 | 0.87 | 5.37e-11 | 1.76e-06 | |
102 | 1 | NPC prolif. | all | TFF3 | 7033 | 11757 | 0.25 | 0.14 | 0.05 | 4.81e-11 | 1.57e-06 | |
102 | 1 | NPC prolif. | all | TLE4 | 7091 | 11840 | 0.25 | 0.44 | 0.43 | 0.002255693874631 | 1 | |
102 | 1 | NPC prolif. | all | PCSK1N | 27344 | 17301 | 0.24 | 0.68 | 0.67 | 1.42e-07 | 0.00463396541386 | |
102 | 1 | NPC prolif. | all | ARID5A | 10865 | 17361 | 0.24 | 0.18 | 0.11 | 3.81e-06 | 0.12 | |
102 | 1 | NPC prolif. | all | SOX4 | 6659 | 11200 | 0.24 | 0.91 | 0.92 | 9.44e-07 | 0.03 | |
102 | 1 | NPC prolif. | all | HOXD1 | 3231 | 5132 | 0.24 | 0.23 | 0.19 | 0.003371817059152 | 1 | |
102 | 1 | NPC prolif. | all | SCG5 | 6447 | 10816 | 0.24 | 0.47 | 0.41 | 1.79e-05 | 0.58 | |
102 | 1 | NPC prolif. | all | LTBP4 | 8425 | 6717 | 0.24 | 0.32 | 0.27 | 0.000157993628996 | 1 | |
102 | 1 | NPC prolif. | all | SPARC | 6678 | 11219 | 0.23 | 0.79 | 0.72 | 2.19e-15 | 7.18e-11 | |
102 | 1 | NPC prolif. | all | NRP1 | 8829 | 8004 | 0.23 | 0.29 | 0.25 | 0.001241333261315 | 1 | |
102 | 1 | NPC prolif. | all | NR2F1 | 7025 | 7975 | 0.23 | 0.78 | 0.81 | 1.06e-05 | 0.34 | |
102 | 1 | NPC prolif. | all | SLC15A1 | 6564 | 10920 | 0.23 | 0.32 | 0.25 | 5.88e-05 | 1 | |
102 | 1 | NPC prolif. | all | LINC00685 | 283981 | 27560 | 0.23 | 0.25 | 0.21 | 0.001212265424092 | 1 | |
102 | 1 | NPC prolif. | all | PEG10 | 23089 | 14005 | 0.22 | 0.76 | 0.77 | 3.97e-05 | 1 | |
102 | 1 | NPC prolif. | all | VCAN | 1462 | 2464 | 0.22 | 0.59 | 0.59 | 5.45e-05 | 1 | |
102 | 1 | NPC prolif. | all | TNNC2 | 7125 | 11944 | 0.22 | 0.1 | 0.02 | 6.25e-16 | 2.05e-11 | |
102 | 1 | NPC prolif. | all | ATP5MG | 10632 | 14247 | 0.22 | 0.97 | 0.98 | 1.24e-13 | 4.05e-09 | |
102 | 1 | NPC prolif. | all | NKAIN3 | 286183 | 26829 | 0.22 | 0.25 | 0.22 | 0.003868508182363 | 1 | |
102 | 1 | NPC prolif. | all | SH3BGRL3 | 83442 | 15568 | 0.21 | 0.62 | 0.64 | 0.000113798504836 | 1 | |
102 | 1 | NPC prolif. | all | CNN2 | 1265 | 2156 | 0.21 | 0.46 | 0.45 | 0.002981260197676 | 1 | |
102 | 1 | NPC prolif. | all | EFNA5 | 1946 | 3225 | 0.21 | 0.25 | 0.22 | 0.007561487147146 | 1 | |
102 | 1 | NPC prolif. | all | PFDN5 | 5204 | 8869 | 0.21 | 0.99 | 0.98 | 3.22e-15 | 1.06e-10 | |
102 | 1 | NPC prolif. | all | CTD-2147F2.1 | NULL | 0.21 | 0.23 | 0.18 | 0.000683602482571 | 1 | ||
102 | 1 | NPC prolif. | all | HOTAIRM1 | 100506311 | 37117 | 0.21 | 0.46 | 0.46 | 0.002179621590531 | 1 | |
102 | 1 | NPC prolif. | all | EIF3E | 3646 | 3277 | 0.21 | 0.98 | 0.99 | 1.84e-16 | 6.01e-12 | |
102 | 1 | NPC prolif. | all | MFSD10 | 10227 | 16894 | 0.21 | 0.33 | 0.33 | 0.008551098774727 | 1 | |
102 | 1 | NPC prolif. | all | TIMP1 | 7076 | 11820 | 0.21 | 0.59 | 0.63 | 0.000330625413557 | 1 | |
102 | 1 | NPC prolif. | all | EIF4A2 | 1974 | 3284 | 0.21 | 0.97 | 0.98 | 1.41e-13 | 4.62e-09 | |
102 | 1 | NPC prolif. | all | HMCN1 | 83872 | 19194 | 0.21 | 0.21 | 0.13 | 4.03e-06 | 0.13 | |
102 | 1 | NPC prolif. | all | NPDC1 | 56654 | 7899 | 0.21 | 0.3 | 0.24 | 0.000139462208349 | 1 | |
102 | 1 | NPC prolif. | all | HLA-DQB1 | 3119 | 4944 | 0.2 | 0.26 | 0.19 | 4.98e-05 | 1 | |
102 | 1 | NPC prolif. | all | STARD4-AS1 | 100505678 | 44117 | 0.2 | 0.36 | 0.33 | 0.001666919856961 | 1 | |
102 | 1 | NPC prolif. | all | RSPO3 | 84870 | 20866 | 0.2 | 0.42 | 0.38 | 0.001162312054394 | 1 | |
102 | 1 | NPC prolif. | all | COMMD3 | 23412 | 23332 | 0.2 | 0.38 | 0.39 | 0.008880652025772 | 1 | |
102 | 1 | NPC prolif. | all | C4orf48 | 401115 | 34437 | 0.2 | 0.38 | 0.37 | 0.003332164072034 | 1 | |
102 | 1 | NPC prolif. | all | STAT3 | 6774 | 11364 | 0.19 | 0.45 | 0.44 | 0.005920104667213 | 1 | |
102 | 1 | NPC prolif. | all | COL6A3 | 1293 | 2213 | 0.19 | 0.19 | 0.14 | 0.000464999623028 | 1 | |
102 | 1 | NPC prolif. | all | ND5 | 4540 | 7461 | 0.19 | 0.64 | 0.67 | 0.000120885071024 | 1 | |
102 | 1 | NPC prolif. | all | BAZ2B | 29994 | 963 | 0.19 | 0.53 | 0.56 | 0.002348196083715 | 1 | |
102 | 1 | NPC prolif. | all | GYPC | 2995 | 4704 | 0.19 | 0.43 | 0.42 | 0.001357924711735 | 1 | |
102 | 1 | NPC prolif. | all | QARS | 5859 | 9751 | 0.18 | 0.59 | 0.64 | 0.000860903537401 | 1 | |
102 | 1 | NPC prolif. | all | PSME1 | 5720 | 9568 | 0.18 | 0.57 | 0.6 | 0.000609911218773 | 1 | |
102 | 1 | NPC prolif. | all | RPS4X | 6191 | 10424 | 0.18 | 1 | 1 | 1.34e-32 | 4.4e-28 | |
102 | 1 | NPC prolif. | all | COMMD6 | 170622 | 24015 | 0.18 | 0.93 | 0.94 | 1.95e-08 | 0.000636850669099 | |
102 | 1 | NPC prolif. | all | EIF1 | 10209 | 3249 | 0.17 | 0.99 | 0.99 | 1.33e-13 | 4.36e-09 | |
102 | 1 | NPC prolif. | all | CCND2 | 894 | 1583 | 0.17 | 0.47 | 0.47 | 0.004392268692021 | 1 | |
102 | 1 | NPC prolif. | all | RPL3 | 6122 | 10332 | 0.17 | 1 | 1 | 2.29e-32 | 7.49e-28 | |
102 | 1 | NPC prolif. | all | RPL34 | 6164 | 10340 | 0.17 | 1 | 1 | 1.1e-27 | 3.59e-23 | |
102 | 1 | NPC prolif. | all | EIF3L | 51386 | 18138 | 0.17 | 0.94 | 0.95 | 8.71e-08 | 0.002850494347655 | |
102 | 1 | NPC prolif. | all | RPL10 | 6134 | 10298 | 0.17 | 1 | 1 | 2.79e-33 | 9.14e-29 | |
102 | 1 | NPC prolif. | all | MCAM | 4162 | 6934 | 0.17 | 0.12 | 0.08 | 0.004692438414619 | 1 | |
102 | 1 | NPC prolif. | all | CLDN9 | 9080 | 2051 | 0.16 | 0.12 | 0.06 | 1.37e-05 | 0.44 | |
102 | 1 | NPC prolif. | all | ERGIC3 | 51614 | 15927 | 0.16 | 0.71 | 0.79 | 0.000224004436427 | 1 | |
102 | 1 | NPC prolif. | all | ACTG1 | 71 | 144 | 0.16 | 1 | 1 | 1.11e-12 | 3.62e-08 | |
102 | 1 | NPC prolif. | all | SSR2 | 6746 | 11324 | 0.16 | 0.86 | 0.91 | 1.38e-06 | 0.04 | |
102 | 1 | NPC prolif. | all | VAMP2 | 6844 | 12643 | 0.16 | 0.6 | 0.62 | 0.000225733212167 | 1 | |
102 | 1 | NPC prolif. | all | HIGD2A | 192286 | 28311 | 0.16 | 0.69 | 0.72 | 0.00012507189924 | 1 | |
102 | 1 | NPC prolif. | all | ESPN | 83715 | 13281 | 0.15 | 0.12 | 0.05 | 4.13e-06 | 0.13 | |
102 | 1 | NPC prolif. | all | NNAT | 4826 | 7860 | 0.15 | 0.9 | 0.84 | 0.000126957175294 | 1 | |
102 | 1 | NPC prolif. | all | CNTNAP2 | 26047 | 13830 | 0.15 | 0.12 | 0.08 | 0.004240069813018 | 1 | |
102 | 1 | NPC prolif. | all | KIF1A | 547 | 888 | 0.15 | 0.17 | 0.13 | 0.008521261118364 | 1 | |
102 | 1 | NPC prolif. | all | RPL35A | 6165 | 10345 | 0.15 | 1 | 1 | 5.25e-23 | 1.72e-18 | |
102 | 1 | NPC prolif. | all | EEF2 | 1938 | 3214 | 0.15 | 0.99 | 0.99 | 2.47e-11 | 8.1e-07 | |
102 | 1 | NPC prolif. | all | RPL36AL | 6166 | 10346 | 0.14 | 0.83 | 0.87 | 0.000154677079315 | 1 | |
102 | 1 | NPC prolif. | all | RPL15 | 6138 | 10306 | 0.14 | 1 | 1 | 2.44e-25 | 8e-21 | |
102 | 1 | NPC prolif. | all | RP11-527L4.2 | NULL | 0.14 | 0.12 | 0.08 | 0.002393816106312 | 1 | ||
102 | 1 | NPC prolif. | all | ZFAS1 | 441951 | 33101 | 0.14 | 0.92 | 0.96 | 1.2e-05 | 0.39 | |
102 | 1 | NPC prolif. | all | CCNI | 10983 | 1595 | 0.14 | 0.99 | 0.98 | 1.43e-06 | 0.04 | |
102 | 1 | NPC prolif. | all | PRKCB | 5579 | 9395 | 0.14 | 0.1 | 0.04 | 2.32e-05 | 0.76 | |
102 | 1 | NPC prolif. | all | UQCRB | 7381 | 12582 | 0.14 | 0.94 | 0.96 | 0.000147069399634 | 1 | |
102 | 1 | NPC prolif. | all | FAT3 | 120114 | 23112 | 0.14 | 0.24 | 0.19 | 0.006527794593868 | 1 | |
102 | 1 | NPC prolif. | all | RPL13 | 6137 | 10303 | 0.14 | 1 | 1 | 4.2e-27 | 1.38e-22 | |
102 | 1 | NPC prolif. | all | FTH1 | 2495 | 3976 | 0.14 | 1 | 1 | 2.56e-12 | 8.37e-08 | |
102 | 1 | NPC prolif. | all | C9orf16 | 79095 | 17823 | 0.14 | 0.63 | 0.68 | 0.002086525046877 | 1 | |
102 | 1 | NPC prolif. | all | CUTA | 51596 | 21101 | 0.14 | 0.88 | 0.92 | 0.000120618780563 | 1 | |
102 | 1 | NPC prolif. | all | CHRNA1 | 1134 | 1955 | 0.14 | 0.17 | 0.12 | 0.005639723922704 | 1 | |
102 | 1 | NPC prolif. | all | TMSB4X | 7114 | 11881 | 0.14 | 0.99 | 0.99 | 5.17e-09 | 0.000169366793873 | |
102 | 1 | NPC prolif. | all | RPL7 | 6129 | 10363 | 0.13 | 1 | 1 | 3.94e-26 | 1.29e-21 | |
102 | 1 | NPC prolif. | all | SKP1 | 6500 | 10899 | 0.13 | 0.98 | 0.99 | 1.1e-07 | 0.003607565318549 | |
102 | 1 | NPC prolif. | all | SNHG8 | 100093630 | 33098 | 0.13 | 0.67 | 0.71 | 0.002626000469608 | 1 | |
102 | 1 | NPC prolif. | all | RPL30 | 6156 | 10333 | 0.13 | 1 | 1 | 5.78e-15 | 1.89e-10 | |
102 | 1 | NPC prolif. | all | MYL6 | 4637 | 7587 | 0.13 | 0.97 | 0.98 | 6.87e-05 | 1 | |
102 | 1 | NPC prolif. | all | RPL6 | 6128 | 10362 | 0.13 | 1 | 1 | 5.8e-18 | 1.9e-13 | |
102 | 1 | NPC prolif. | all | PAIP2 | 51247 | 17970 | 0.13 | 0.79 | 0.82 | 0.000371032408427 | 1 | |
102 | 1 | NPC prolif. | all | WASF2 | 10163 | 12733 | 0.12 | 0.79 | 0.83 | 0.000281962469844 | 1 | |
102 | 1 | NPC prolif. | all | PCBP2 | 5094 | 8648 | 0.12 | 0.9 | 0.93 | 0.002866247362472 | 1 | |
102 | 1 | NPC prolif. | all | HSP90AB1 | 3326 | 5258 | 0.12 | 1 | 1 | 1.3e-08 | 0.000426724965051 | |
102 | 1 | NPC prolif. | all | RPL5 | 6125 | 10360 | 0.12 | 1 | 1 | 1.6e-15 | 5.25e-11 | |
102 | 1 | NPC prolif. | all | PNISR | 25957 | 21222 | 0.12 | 0.9 | 0.94 | 0.000686984602079 | 1 | |
102 | 1 | NPC prolif. | all | NACA | 4666 | 7629 | 0.12 | 0.99 | 0.99 | 2.48e-08 | 0.00081032875328 | |
102 | 1 | NPC prolif. | all | HNRNPA1 | 3178 | 5031 | 0.12 | 1 | 1 | 7.21e-13 | 2.36e-08 | |
102 | 1 | NPC prolif. | all | LAPTM4A | 9741 | 6924 | 0.12 | 0.9 | 0.95 | 0.003540053149318 | 1 | |
102 | 1 | NPC prolif. | all | EEF1A1 | 1915 | 3189 | 0.12 | 1 | 1 | 3.92e-21 | 1.28e-16 | |
102 | 1 | NPC prolif. | all | SLC25A6 | 293 | 10992 | 0.11 | 0.99 | 0.99 | 1.26e-08 | 0.00041228636286 | |
102 | 1 | NPC prolif. | all | CXCL12 | 6387 | 10672 | 0.11 | 0.29 | 0.25 | 0.003081822607216 | 1 | |
102 | 1 | NPC prolif. | all | ND2 | 4536 | 7456 | 0.11 | 0.98 | 0.98 | 0.000246974555746 | 1 | |
102 | 1 | NPC prolif. | all | SRP14 | 6727 | 11299 | 0.11 | 0.99 | 0.99 | 3.4e-05 | 1 | |
102 | 1 | NPC prolif. | all | FTL | 2512 | 3999 | 0.11 | 0.98 | 0.98 | 4.69e-08 | 0.001535868202997 | |
102 | 1 | NPC prolif. | all | RPS4Y1 | 6192 | 10425 | 0.11 | 0.98 | 0.99 | 8.62e-06 | 0.28 | |
102 | 1 | NPC prolif. | all | RPS23 | 6228 | 10410 | 0.1 | 1 | 1 | 6.18e-14 | 2.02e-09 | |
102 | 1 | NPC prolif. | all | MYL12B | 103910 | 29827 | 0.1 | 0.85 | 0.89 | 0.00224128434848 | 1 | |
102 | 1 | NPC prolif. | all | RPS9 | 6203 | 10442 | 0.1 | 1 | 1 | 9.56e-11 | 3.13e-06 | |
102 | 1 | NPC prolif. | all | SPINT2 | 10653 | 11247 | 0.1 | 0.48 | 0.41 | 0.000131683751378 | 1 | |
102 | 1 | NPC prolif. | all | RPL17 | 6139 | 10307 | 0.1 | 0.97 | 0.99 | 7.97e-05 | 1 |