Marker Genes

Dataset: A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing

  • tissue: Bone marrow
  • ontology: Bone marrow
  • genotype: -
  • stage: Adult
  • treatment condition: AML
  • cell/nucleus: Cells
  • pmid: 31413257
  • subset name: all
  • total genes: 20090
  • clustering: Seurat
  • pseudotime: None
  • link:

Rows:100
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
101 8 HSC all PRSS57 400668 31397 1.05 0.95 0.31 0 0
101 8 HSC all FAM30A 9834 19955 1.03 0.78 0.2 0 0
101 8 HSC all SOX4 6659 11200 0.98 0.74 0.23 0 0
101 8 HSC all MSI2 124540 18585 0.91 0.8 0.24 0 0
101 8 HSC all EGFL7 51162 20594 0.91 0.65 0.14 0 0
101 8 HSC all SOCS2 8835 19382 0.88 0.54 0.13 0 0
101 8 HSC all HIST2H2AA4 723790 29668 0.86 0.76 0.36 0 0
101 8 HSC all SPINK2 6691 11245 0.84 0.87 0.29 0 0
101 8 HSC all CDK6 1021 1777 0.78 0.84 0.33 0 0
101 8 HSC all SMIM24 284422 37244 0.76 0.62 0.14 0 0
101 8 HSC all GATA2 2624 4171 0.72 0.53 0.12 0 0
101 8 HSC all ZFAS1 441951 33101 0.69 0.97 0.7 0 0
101 8 HSC all CD164 8763 1632 0.68 0.85 0.55 0 0
101 8 HSC all MIR155HG 114614 35460 0.68 0.49 0.12 0 0
101 8 HSC all C1QTNF4 114900 14346 0.68 0.37 0.09 0 0
101 8 HSC all ANKRD28 23243 29024 0.67 0.91 0.48 0 0
101 8 HSC all HIST2H2AA3 8337 4736 0.67 0.55 0.19 0 0
101 8 HSC all RP11-1000B6.3 NULL 0.67 0.78 0.36 0 0
101 8 HSC all SELENOP 6414 10751 0.66 0.57 0.15 0 0
101 8 HSC all HSH2D 84941 24920 0.66 0.81 0.36 0 0
101 8 HSC all GUCY1A1 2982 4685 0.66 0.52 0.12 0 0
101 8 HSC all RPS4X 6191 10424 0.64 1 0.94 0 0
101 8 HSC all SEPTIN6 23157 15848 0.64 0.86 0.47 0 0
101 8 HSC all ATP8B4 79895 13536 0.63 0.66 0.23 0 0
101 8 HSC all CD99 4267 7082 0.62 0.95 0.62 0 0
101 8 HSC all CD34 947 1662 0.62 0.39 0.12 0 0
101 8 HSC all RUNX1 861 10471 0.61 0.84 0.4 0 0
101 8 HSC all RP11-620J15.3 NULL 0.61 0.68 0.26 0 0
101 8 HSC all SERPINB1 1992 3311 0.6 0.96 0.62 0 0
101 8 HSC all IGLL1 3543 5870 0.6 0.38 0.07 0 0
101 8 HSC all GNA15 2769 4383 0.6 0.67 0.24 0 0
101 8 HSC all EEF2 1938 3214 0.58 0.98 0.88 0 0
101 8 HSC all HINT1 3094 4912 0.58 0.99 0.82 0 0
101 8 HSC all RPLP0 6175 10371 0.57 1 0.93 0 0
101 8 HSC all CYTL1 54360 24435 0.56 0.49 0.14 0 0
101 8 HSC all HOXA9 3205 5109 0.55 0.66 0.24 0 0
101 8 HSC all BEX3 27018 13388 0.55 0.53 0.17 0 0
101 8 HSC all IMPDH2 3615 6053 0.55 0.77 0.36 0 0
101 8 HSC all DDAH2 23564 2716 0.54 0.66 0.27 0 0
101 8 HSC all RHEX 440712 25341 0.54 0.52 0.17 0 0
101 8 HSC all MGST1 4257 7061 0.53 0.75 0.36 0 0
101 8 HSC all ZFP36L2 678 1108 0.52 0.98 0.85 0 0
101 8 HSC all SMYD3 64754 15513 0.52 0.55 0.18 0 0
101 8 HSC all CLEC11A 6320 10576 0.52 0.59 0.21 0 0
101 8 HSC all HOPX 84525 24961 0.51 0.37 0.15 0 0
101 8 HSC all EBPL 84650 18061 0.51 0.72 0.32 0 0
101 8 HSC all TFDP2 7029 11751 0.51 0.64 0.24 0 0
101 8 HSC all ANGPT1 284 484 0.51 0.46 0.12 0 0
101 8 HSC all MSRB3 253827 27375 0.5 0.53 0.15 0 0
101 8 HSC all PDLIM1 9124 2067 0.5 0.57 0.2 0 0
101 8 HSC all H2AFY 9555 4740 0.49 0.87 0.58 0 0
101 8 HSC all HMGA1 3159 5010 0.49 0.77 0.39 0 0
101 8 HSC all BEX4 56271 25475 0.49 0.56 0.21 0 0
101 8 HSC all RPL12 6136 10302 0.49 1 0.94 0 0
101 8 HSC all APEX1 328 587 0.49 0.81 0.45 0 0
101 8 HSC all CLU 1191 2095 0.49 0.47 0.17 0 0
101 8 HSC all RPL5 6125 10360 0.48 0.99 0.93 0 0
101 8 HSC all CD82 3732 6210 0.48 0.6 0.25 0 0
101 8 HSC all SPNS3 201305 28433 0.48 0.59 0.24 0 0
101 8 HSC all ITM2C 81618 6175 0.48 0.57 0.25 0 0
101 8 HSC all LSM7 51690 20470 0.48 0.87 0.57 0 0
101 8 HSC all HOXB-AS3 404266 40283 0.47 0.5 0.15 0 0
101 8 HSC all EEF1B2 1933 3208 0.47 0.99 0.88 0 0
101 8 HSC all MDK 4192 6972 0.47 0.3 0.07 0 0
101 8 HSC all CXXC5 51523 26943 0.47 0.51 0.17 0 0
101 8 HSC all RACK1 10399 4399 0.47 0.99 0.92 0 0
101 8 HSC all GMDS 2762 4369 0.47 0.59 0.24 0 0
101 8 HSC all EIF3E 3646 3277 0.46 0.97 0.79 0 0
101 8 HSC all NREP 9315 16834 0.46 0.55 0.2 0 0
101 8 HSC all RPL3 6122 10332 0.46 0.99 0.93 0 0
101 8 HSC all RPS6 6194 10429 0.46 0.99 0.94 0 0
101 8 HSC all CALCRL 10203 16709 0.46 0.4 0.15 0 0
101 8 HSC all CCNB1IP1 57820 19437 0.46 0.6 0.24 0 0
101 8 HSC all ZNF22 7570 13012 0.45 0.6 0.24 0 0
101 8 HSC all ETS2 2114 3489 0.45 0.54 0.22 0 0
101 8 HSC all RPS18 6222 10401 0.44 0.99 0.94 0 0
101 8 HSC all CPXM1 56265 15771 0.44 0.45 0.12 0 0
101 8 HSC all SNHG8 100093630 33098 0.44 0.85 0.51 0 0
101 8 HSC all SPN 6693 11249 0.44 0.74 0.39 0 0
101 8 HSC all HNRNPA1 3178 5031 0.44 0.99 0.87 0 0
101 8 HSC all MIR181A1HG 100131234 48659 0.44 0.44 0.14 0 0
101 8 HSC all RPS3 6188 10420 0.44 1 0.95 0 0
101 8 HSC all ADA 100 186 0.43 0.55 0.21 0 0
101 8 HSC all BAHCC1 57597 29279 0.43 0.42 0.11 0 0
101 8 HSC all AMD1 262 457 0.43 0.76 0.41 0 0
101 8 HSC all RNF220 55182 25552 0.43 0.6 0.25 0 0
101 8 HSC all TM7SF3 51768 23049 0.43 0.58 0.24 0 0
101 8 HSC all NPM1 4869 7910 0.43 0.98 0.8 0 0
101 8 HSC all NFE2 4778 7780 0.43 0.74 0.36 0 0
101 8 HSC all EEF1A1 1915 3189 0.43 1 0.96 0 0
101 8 HSC all CIRBP 1153 1982 0.43 0.94 0.75 0 0
101 8 HSC all ERG 2078 3446 0.43 0.4 0.1 0 0
101 8 HSC all VIM 7431 12692 0.43 0.98 0.88 0 0
101 8 HSC all CNST 163882 26486 0.43 0.63 0.3 0 0
101 8 HSC all RPL10A 4736 10299 0.42 0.99 0.91 0 0
101 8 HSC all RPS8 6202 10441 0.42 1 0.96 0 0
101 8 HSC all RPL15 6138 10306 0.42 1 0.94 0 0
101 8 HSC all MAT2A 4144 6904 0.42 0.75 0.43 0 0
101 8 HSC all GTF3A 2971 4662 0.42 0.82 0.5 0 0
101 8 HSC all ND4L 4539 7460 0.42 0.99 0.96 0 0