Marker Genes

Dataset: A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing

  • tissue: Bone marrow
  • ontology: Bone marrow
  • genotype: -
  • stage: Adult
  • treatment condition: AML
  • cell/nucleus: Cells
  • pmid: 31413257
  • subset name: all
  • total genes: 20090
  • clustering: Seurat
  • pseudotime: None
  • link:

Rows:100
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
101 2 CMP all MPO 4353 7218 2.09 0.84 0.18 0 0
101 2 CMP all RNASE2 6036 10045 1.53 0.74 0.27 0 0
101 2 CMP all AZU1 566 913 1.52 0.86 0.3 0 0
101 2 CMP all CTSG 1511 2532 1.34 0.58 0.23 0 0
101 2 CMP all EGR1 1958 3238 1.3 0.78 0.31 0 0
101 2 CMP all IGHA1 3493 5478 1.28 0.15 0.04 3.72332388546255e-139 8.87603181055417e-135
101 2 CMP all PRTN3 5657 9495 1.15 0.23 0.05 0 0
101 2 CMP all CFD 1675 2771 1.09 0.89 0.54 0 0
101 2 CMP all CPA3 1359 2298 1.03 0.52 0.1 0 0
101 2 CMP all NPW 283869 30509 1.03 0.36 0.09 0 0
101 2 CMP all RP11-620J15.3 NULL 1.01 0.74 0.39 0 0
101 2 CMP all ARMH1 339541 34345 0.95 0.77 0.47 0 0
101 2 CMP all MGST1 4257 7061 0.93 0.8 0.48 0 0
101 2 CMP all JUND 3727 6206 0.9 0.84 0.64 0 0
101 2 CMP all CLEC11A 6320 10576 0.88 0.64 0.32 0 0
101 2 CMP all HIST2H2AA4 723790 29668 0.86 0.65 0.48 2.45184635001941e-177 5.84495651381128e-173
101 2 CMP all SOX4 6659 11200 0.84 0.69 0.39 0 0
101 2 CMP all NUCB2 4925 8044 0.84 0.67 0.43 0 0
101 2 CMP all STMN1 3925 6510 0.82 0.74 0.5 5.5011947775492e-271 1.31142982301995e-266
101 2 CMP all FTO 79068 24678 0.82 0.41 0.11 0 0
101 2 CMP all NBEAL1 65065 20681 0.82 0.94 0.88 0 0
101 2 CMP all ELANE 1991 3309 0.8 0.24 0.04 0 0
101 2 CMP all HIST2H2AA3 8337 4736 0.8 0.49 0.3 7.66041444009094e-158 1.82616619837328e-153
101 2 CMP all SRGN 5552 9361 0.8 0.95 0.85 0 0
101 2 CMP all FOSB 2354 3797 0.79 0.79 0.61 1.77681841768666e-260 4.23575742592324e-256
101 2 CMP all EREG 2069 3443 0.77 0.28 0.07 0 0
101 2 CMP all PCLAF 9768 28961 0.77 0.35 0.17 4.57338255890491e-163 1.09024866821734e-158
101 2 CMP all HIST1H4C 8364 4787 0.76 0.37 0.37 8.92316724521916e-17 2.1271938395878e-12
101 2 CMP all HMGB2 3148 5000 0.73 0.63 0.57 6.2857811379286e-100 1.4984673654708e-95
101 2 CMP all RPS4Y1 6192 10425 0.71 0.72 0.41 0 0
101 2 CMP all RPS17 6218 10397 0.69 0.93 0.85 0 0
101 2 CMP all CALR 811 1455 0.68 0.81 0.68 7.17729766805892e-273 1.71099599108857e-268
101 2 CMP all DUT 1854 3078 0.68 0.69 0.58 1.26675952665875e-177 3.01982803560179e-173
101 2 CMP all HMGN2 3151 4986 0.66 0.91 0.87 5.44750734825588e-268 1.29863127675072e-263
101 2 CMP all HSP90B1 7184 12028 0.64 0.67 0.61 1.84935125942993e-107 4.40866846735501e-103
101 2 CMP all SNHG9 735301 33102 0.64 0.44 0.31 1.49974137371592e-109 3.57523346080138e-105
101 2 CMP all F13A1 2162 3531 0.63 0.4 0.15 1.7626289530315e-299 4.2019311611318e-295
101 2 CMP all RPL36A 6173 10359 0.62 0.96 0.93 0 0
101 2 CMP all RNASE3 6037 10046 0.62 0.26 0.05 0 0
101 2 CMP all MYB 4602 7545 0.61 0.49 0.31 4.19371665676088e-170 9.99740113805227e-166
101 2 CMP all GMDS 2762 4369 0.61 0.5 0.35 1.63072786664959e-146 3.88749216130595e-142
101 2 CMP all FABP5 2171 3560 0.61 0.49 0.3 2.10696804104527e-179 5.02280111304782e-175
101 2 CMP all RFLNB 359845 28705 0.6 0.42 0.24 1.0358822025048e-163 2.46943958255119e-159
101 2 CMP all H2AFZ 3015 4741 0.6 0.73 0.69 7.02229720664517e-128 1.67404543109214e-123
101 2 CMP all CRNDE 643911 37078 0.59 0.34 0.14 3.53350879054828e-232 8.42353160578805e-228
101 2 CMP all PRSS57 400668 31397 0.59 0.86 0.51 1.06876170884629e-299 2.54782103771867e-295
101 2 CMP all NAP1L1 4673 7637 0.58 0.86 0.76 9.44207042312253e-285 2.25089516816818e-280
101 2 CMP all ANXA2R 389289 33463 0.58 0.33 0.17 2.28936587193806e-140 5.45761930211314e-136
101 2 CMP all HSP90AA1 3320 5253 0.58 0.91 0.81 1.49571884566934e-287 3.56564415619114e-283
101 2 CMP all RPL7 6129 10363 0.58 0.97 0.94 0 0
101 2 CMP all UBE2C 11065 15937 0.56 0.13 0.05 1.32289622461788e-73 3.15365230986656e-69
101 2 CMP all IRF2BP2 359948 21729 0.56 0.66 0.54 2.27965036088499e-165 5.43445849531374e-161
101 2 CMP all IER2 9592 28871 0.56 0.77 0.68 4.79932856745369e-153 1.14411193719528e-148
101 2 CMP all CTD-2192J16.22 NULL 0.56 0.85 0.7 8.23219293678542e-227 1.96247247420028e-222
101 2 CMP all FLT3 2322 3765 0.55 0.45 0.3 9.58151224795687e-124 2.28413670479044e-119
101 2 CMP all CAT 847 1516 0.54 0.72 0.58 5.03018093933935e-185 1.19914483412911e-180
101 2 CMP all RP11-84C10.2 NULL 0.54 0.18 0.03 0 0
101 2 CMP all MCM7 4176 6950 0.54 0.39 0.24 1.76694029834514e-115 4.21220897722498e-111
101 2 CMP all TRIM28 10155 16384 0.53 0.37 0.25 2.86953242577888e-96 6.84067834981428e-92
101 2 CMP all EIF4A1 1973 3282 0.53 0.7 0.63 5.56892106656518e-156 1.32757509305847e-151
101 2 CMP all MS4A3 932 7317 0.53 0.22 0.05 5.74999113481849e-308 1.37074038662938e-303
101 2 CMP all TUBB4B 10383 20771 0.52 0.42 0.37 2.7484617558021e-46 6.55205797965663e-42
101 2 CMP all ATP5MC2 517 842 0.51 0.97 0.9 0 0
101 2 CMP all RPS24 6229 10411 0.51 0.99 0.97 0 0
101 2 CMP all TRGC2 6967 12276 0.5 0.39 0.23 7.39320457506269e-121 1.76246603864919e-116
101 2 CMP all ND4 4538 7459 0.5 0.96 0.97 0 0
101 2 CMP all CITED2 10370 1987 0.5 0.56 0.5 6.85612340046083e-66 1.63443125743586e-61
101 2 CMP all RNU12 267010 19380 0.5 0.2 0.13 1.11925816759924e-36 2.66819954573983e-32
101 2 CMP all RCC1 1104 1913 0.49 0.57 0.49 2.68436610202964e-90 6.39926035062846e-86
101 2 CMP all CEBPA 1050 1833 0.49 0.35 0.23 4.2574598547963e-89 1.01493585478489e-84
101 2 CMP all CKS2 1164 2000 0.48 0.32 0.29 1.46845154692618e-24 3.50064164271733e-20
101 2 CMP all TUBA1C 84790 20768 0.48 0.41 0.35 3.16240190560715e-52 7.53884990277688e-48
101 2 CMP all ANXA1 301 533 0.48 0.8 0.68 7.02393193030914e-151 1.6744351328664e-146
101 2 CMP all HOMER3 9454 17514 0.48 0.31 0.17 8.65096638269259e-105 2.06230387597009e-100
101 2 CMP all RNASEH2C 84153 24116 0.48 0.47 0.44 1.65863268451128e-50 3.95401445660643e-46
101 2 CMP all HNRNPH1 3187 5041 0.47 0.66 0.59 5.61444741219293e-124 1.33842811859267e-119
101 2 CMP all DEFB1 1672 2766 0.47 0.16 0.01 0 0
101 2 CMP all NASP 4678 7644 0.47 0.45 0.35 6.78487361970542e-80 1.61744602220157e-75
101 2 CMP all RPL39 6170 10350 0.47 0.99 0.96 0 0
101 2 CMP all SSR4 6748 11326 0.47 0.74 0.74 6.49576543194631e-72 1.54852552132168e-67
101 2 CMP all HMGB1 3146 4983 0.47 0.88 0.85 1.23755643560403e-139 2.95021078683644e-135
101 2 CMP all ATP8B4 79895 13536 0.46 0.49 0.37 6.09598604008624e-91 1.45322211209616e-86
101 2 CMP all MIF 4282 7097 0.46 0.93 0.84 5.95865087240532e-206 1.4204827814727e-201
101 2 CMP all IGFBP2 3485 5471 0.46 0.27 0.12 2.40102615713979e-123 5.72380625600553e-119
101 2 CMP all RPL41 6171 10354 0.46 0.99 0.98 0 0
101 2 CMP all PRSS21 10942 9485 0.46 0.24 0.09 1.35912393930069e-150 3.24001555889893e-146
101 2 CMP all ANKRD28 23243 29024 0.46 0.79 0.61 2.18886283901178e-159 5.21803012192017e-155
101 2 CMP all TPSB2 64499 14120 0.45 0.11 0.03 1.17252225327808e-112 2.79517579958961e-108
101 2 CMP all PER1 5187 8845 0.45 0.3 0.17 2.16545424249003e-85 5.16222636867197e-81
101 2 CMP all RASGRP3 25780 14545 0.45 0.23 0.1 1.81911441135277e-123 4.33658684522388e-119
101 2 CMP all PCNA 5111 8729 0.45 0.27 0.18 1.19084966113679e-51 2.838866507184e-47
101 2 CMP all RAB27A 5873 9766 0.45 0.34 0.2 8.77155904509317e-96 2.09105196075976e-91
101 2 CMP all SRSF6 6431 10788 0.44 0.43 0.36 5.20107917330203e-65 1.23988526412347e-60
101 2 CMP all RPL12 6136 10302 0.44 0.98 0.96 0 0
101 2 CMP all ADA 100 186 0.44 0.4 0.32 4.83012113215801e-62 1.15145257669515e-57
101 2 CMP all SLC4A7 9497 11033 0.44 0.22 0.08 4.47757297478988e-137 1.06740862146016e-132
101 2 CMP all TRIB1 10221 16891 0.44 0.3 0.19 2.90754674212344e-66 6.93130067854806e-62
101 2 CMP all SMC4 10051 14013 0.44 0.41 0.34 5.44783543053029e-58 1.29870948828412e-53
101 2 CMP all SRSF3 6428 10785 0.43 0.72 0.69 1.70227609466744e-108 4.0580559820777e-104
101 2 CMP all MZB1 51237 30125 0.43 0.09 0.17 4.87700242832326e-16 1.16262860888798e-11