Marker Genes

Dataset: A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing

  • tissue: Bone marrow
  • ontology: Bone marrow
  • genotype: -
  • stage: Adult
  • treatment condition: AML
  • cell/nucleus: Cells
  • pmid: 31413257
  • subset name: all
  • total genes: 20090
  • clustering: Seurat
  • pseudotime: None
  • link:

Rows:100
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
101 2 CMP all MPO 4353 7218 2.09 0.84 0.18 0 0
101 2 CMP all RNASE2 6036 10045 1.53 0.74 0.27 0 0
101 2 CMP all AZU1 566 913 1.52 0.86 0.3 0 0
101 2 CMP all CTSG 1511 2532 1.34 0.58 0.23 0 0
101 2 CMP all EGR1 1958 3238 1.3 0.78 0.31 0 0
101 2 CMP all IGHA1 3493 5478 1.28 0.15 0.04 3.7233238854625E-139 8.8760318105542E-135
101 2 CMP all PRTN3 5657 9495 1.15 0.23 0.05 0 0
101 2 CMP all CFD 1675 2771 1.09 0.89 0.54 0 0
101 2 CMP all CPA3 1359 2298 1.03 0.52 0.1 0 0
101 2 CMP all NPW 283869 30509 1.03 0.36 0.09 0 0
101 2 CMP all RP11-620J15.3 NULL 1.01 0.74 0.39 0 0
101 2 CMP all ARMH1 339541 34345 0.95 0.77 0.47 0 0
101 2 CMP all MGST1 4257 7061 0.93 0.8 0.48 0 0
101 2 CMP all JUND 3727 6206 0.9 0.84 0.64 0 0
101 2 CMP all CLEC11A 6320 10576 0.88 0.64 0.32 0 0
101 2 CMP all HIST2H2AA4 723790 29668 0.86 0.65 0.48 2.4518463500194E-177 5.8449565138113E-173
101 2 CMP all SOX4 6659 11200 0.84 0.69 0.39 0 0
101 2 CMP all NUCB2 4925 8044 0.84 0.67 0.43 0 0
101 2 CMP all STMN1 3925 6510 0.82 0.74 0.5 5.5011947775492E-271 1.3114298230199E-266
101 2 CMP all FTO 79068 24678 0.82 0.41 0.11 0 0
101 2 CMP all NBEAL1 65065 20681 0.82 0.94 0.88 0 0
101 2 CMP all ELANE 1991 3309 0.8 0.24 0.04 0 0
101 2 CMP all HIST2H2AA3 8337 4736 0.8 0.49 0.3 7.6604144400909E-158 1.8261661983733E-153
101 2 CMP all SRGN 5552 9361 0.8 0.95 0.85 0 0
101 2 CMP all FOSB 2354 3797 0.79 0.79 0.61 1.7768184176867E-260 4.2357574259232E-256
101 2 CMP all EREG 2069 3443 0.77 0.28 0.07 0 0
101 2 CMP all PCLAF 9768 28961 0.77 0.35 0.17 4.5733825589049E-163 1.0902486682173E-158
101 2 CMP all HIST1H4C 8364 4787 0.76 0.37 0.37 8.9231672452192E-17 2.1271938395878E-12
101 2 CMP all HMGB2 3148 5000 0.73 0.63 0.57 6.2857811379286E-100 1.4984673654708E-95
101 2 CMP all RPS4Y1 6192 10425 0.71 0.72 0.41 0 0
101 2 CMP all RPS17 6218 10397 0.69 0.93 0.85 0 0
101 2 CMP all CALR 811 1455 0.68 0.81 0.68 7.1772976680589E-273 1.7109959910886E-268
101 2 CMP all DUT 1854 3078 0.68 0.69 0.58 1.2667595266587E-177 3.0198280356018E-173
101 2 CMP all HMGN2 3151 4986 0.66 0.91 0.87 5.4475073482559E-268 1.2986312767507E-263
101 2 CMP all HSP90B1 7184 12028 0.64 0.67 0.61 1.8493512594299E-107 4.408668467355E-103
101 2 CMP all SNHG9 735301 33102 0.64 0.44 0.31 1.4997413737159E-109 3.5752334608014E-105
101 2 CMP all F13A1 2162 3531 0.63 0.4 0.15 1.7626289530315E-299 4.2019311611318E-295
101 2 CMP all RPL36A 6173 10359 0.62 0.96 0.93 0 0
101 2 CMP all RNASE3 6037 10046 0.62 0.26 0.05 0 0
101 2 CMP all MYB 4602 7545 0.61 0.49 0.31 4.1937166567609E-170 9.9974011380523E-166
101 2 CMP all GMDS 2762 4369 0.61 0.5 0.35 1.6307278666496E-146 3.8874921613059E-142
101 2 CMP all FABP5 2171 3560 0.61 0.49 0.3 2.1069680410453E-179 5.0228011130478E-175
101 2 CMP all RFLNB 359845 28705 0.6 0.42 0.24 1.0358822025048E-163 2.4694395825512E-159
101 2 CMP all H2AFZ 3015 4741 0.6 0.73 0.69 7.0222972066452E-128 1.6740454310921E-123
101 2 CMP all CRNDE 643911 37078 0.59 0.34 0.14 3.5335087905483E-232 8.4235316057881E-228
101 2 CMP all PRSS57 400668 31397 0.59 0.86 0.51 1.0687617088463E-299 2.5478210377187E-295
101 2 CMP all NAP1L1 4673 7637 0.58 0.86 0.76 9.4420704231225E-285 2.2508951681682E-280
101 2 CMP all ANXA2R 389289 33463 0.58 0.33 0.17 2.2893658719381E-140 5.4576193021131E-136
101 2 CMP all HSP90AA1 3320 5253 0.58 0.91 0.81 1.4957188456693E-287 3.5656441561911E-283
101 2 CMP all RPL7 6129 10363 0.58 0.97 0.94 0 0
101 2 CMP all UBE2C 11065 15937 0.56 0.13 0.05 1.3228962246179E-73 3.1536523098666E-69
101 2 CMP all IRF2BP2 359948 21729 0.56 0.66 0.54 2.279650360885E-165 5.4344584953137E-161
101 2 CMP all IER2 9592 28871 0.56 0.77 0.68 4.7993285674537E-153 1.1441119371953E-148
101 2 CMP all CTD-2192J16.22 NULL 0.56 0.85 0.7 8.2321929367854E-227 1.9624724742003E-222
101 2 CMP all FLT3 2322 3765 0.55 0.45 0.3 9.5815122479569E-124 2.2841367047904E-119
101 2 CMP all CAT 847 1516 0.54 0.72 0.58 5.0301809393393E-185 1.1991448341291E-180
101 2 CMP all RP11-84C10.2 NULL 0.54 0.18 0.03 0 0
101 2 CMP all MCM7 4176 6950 0.54 0.39 0.24 1.7669402983451E-115 4.212208977225E-111
101 2 CMP all TRIM28 10155 16384 0.53 0.37 0.25 2.8695324257789E-96 6.8406783498143E-92
101 2 CMP all EIF4A1 1973 3282 0.53 0.7 0.63 5.5689210665652E-156 1.3275750930585E-151
101 2 CMP all MS4A3 932 7317 0.53 0.22 0.05 5.7499911348185E-308 1.3707403866294E-303
101 2 CMP all TUBB4B 10383 20771 0.52 0.42 0.37 2.7484617558021E-46 6.5520579796566E-42
101 2 CMP all ATP5MC2 517 842 0.51 0.97 0.9 0 0
101 2 CMP all RPS24 6229 10411 0.51 0.99 0.97 0 0
101 2 CMP all TRGC2 6967 12276 0.5 0.39 0.23 7.3932045750627E-121 1.7624660386492E-116
101 2 CMP all ND4 4538 7459 0.5 0.96 0.97 0 0
101 2 CMP all CITED2 10370 1987 0.5 0.56 0.5 6.8561234004608E-66 1.6344312574359E-61
101 2 CMP all RNU12 267010 19380 0.5 0.2 0.13 1.1192581675992E-36 2.6681995457398E-32
101 2 CMP all RCC1 1104 1913 0.49 0.57 0.49 2.6843661020296E-90 6.3992603506285E-86
101 2 CMP all CEBPA 1050 1833 0.49 0.35 0.23 4.2574598547963E-89 1.0149358547849E-84
101 2 CMP all CKS2 1164 2000 0.48 0.32 0.29 1.4684515469262E-24 3.5006416427173E-20
101 2 CMP all TUBA1C 84790 20768 0.48 0.41 0.35 3.1624019056072E-52 7.5388499027769E-48
101 2 CMP all ANXA1 301 533 0.48 0.8 0.68 7.0239319303091E-151 1.6744351328664E-146
101 2 CMP all HOMER3 9454 17514 0.48 0.31 0.17 8.6509663826926E-105 2.0623038759701E-100
101 2 CMP all RNASEH2C 84153 24116 0.48 0.47 0.44 1.6586326845113E-50 3.9540144566064E-46
101 2 CMP all HNRNPH1 3187 5041 0.47 0.66 0.59 5.6144474121929E-124 1.3384281185927E-119
101 2 CMP all DEFB1 1672 2766 0.47 0.16 0.01 0 0
101 2 CMP all NASP 4678 7644 0.47 0.45 0.35 6.7848736197054E-80 1.6174460222016E-75
101 2 CMP all RPL39 6170 10350 0.47 0.99 0.96 0 0
101 2 CMP all SSR4 6748 11326 0.47 0.74 0.74 6.4957654319463E-72 1.5485255213217E-67
101 2 CMP all HMGB1 3146 4983 0.47 0.88 0.85 1.237556435604E-139 2.9502107868364E-135
101 2 CMP all ATP8B4 79895 13536 0.46 0.49 0.37 6.0959860400862E-91 1.4532221120962E-86
101 2 CMP all MIF 4282 7097 0.46 0.93 0.84 5.9586508724053E-206 1.4204827814727E-201
101 2 CMP all IGFBP2 3485 5471 0.46 0.27 0.12 2.4010261571398E-123 5.7238062560055E-119
101 2 CMP all RPL41 6171 10354 0.46 0.99 0.98 0 0
101 2 CMP all PRSS21 10942 9485 0.46 0.24 0.09 1.3591239393007E-150 3.2400155588989E-146
101 2 CMP all ANKRD28 23243 29024 0.46 0.79 0.61 2.1888628390118E-159 5.2180301219202E-155
101 2 CMP all TPSB2 64499 14120 0.45 0.11 0.03 1.1725222532781E-112 2.7951757995896E-108
101 2 CMP all PER1 5187 8845 0.45 0.3 0.17 2.16545424249E-85 5.162226368672E-81
101 2 CMP all RASGRP3 25780 14545 0.45 0.23 0.1 1.8191144113528E-123 4.3365868452239E-119
101 2 CMP all PCNA 5111 8729 0.45 0.27 0.18 1.1908496611368E-51 2.838866507184E-47
101 2 CMP all RAB27A 5873 9766 0.45 0.34 0.2 8.7715590450932E-96 2.0910519607598E-91
101 2 CMP all SRSF6 6431 10788 0.44 0.43 0.36 5.201079173302E-65 1.2398852641235E-60
101 2 CMP all RPL12 6136 10302 0.44 0.98 0.96 0 0
101 2 CMP all ADA 100 186 0.44 0.4 0.32 4.830121132158E-62 1.1514525766952E-57
101 2 CMP all SLC4A7 9497 11033 0.44 0.22 0.08 4.4775729747899E-137 1.0674086214602E-132
101 2 CMP all TRIB1 10221 16891 0.44 0.3 0.19 2.9075467421234E-66 6.9313006785481E-62
101 2 CMP all SMC4 10051 14013 0.44 0.41 0.34 5.4478354305303E-58 1.2987094882841E-53
101 2 CMP all SRSF3 6428 10785 0.43 0.72 0.69 1.7022760946674E-108 4.0580559820777E-104
101 2 CMP all MZB1 51237 30125 0.43 0.09 0.17 4.8770024283233E-16 1.162628608888E-11