Marker Genes

Dataset: A general approach for detecting expressed mutations in AML cells using single cell RNA-sequencing

  • tissue: Bone marrow
  • ontology: Bone marrow
  • genotype: -
  • stage: Adult
  • treatment condition: AML
  • cell/nucleus: Cells
  • pmid: 31413257
  • subset name: all
  • total genes: 20090
  • clustering: Seurat
  • pseudotime: None
  • link:

Rows:100
dataset id cluster id cluster name cell type name sample id gene symbol entrez geneid species specific geneid
avg log fc (?)
pct 1 pct 2 p value padj
101 14 PRE-B-CELL all IGKC 3514 5716 2.31 0.16 0.04 6.26231810460581e-41 1.49287401295698e-36
101 14 PRE-B-CELL all HBA2 3040 4824 2.27 0.6 0.14 3.09844977204903e-236 7.38639441158769e-232
101 14 PRE-B-CELL all HBB 3043 4827 2.24 0.62 0.21 4.52047981128467e-162 1.07763718221215e-157
101 14 PRE-B-CELL all IGHA1 3493 5478 2.2 0.15 0.04 2.28443218857094e-33 5.44585789433426e-29
101 14 PRE-B-CELL all IGHG1 3500 5525 2.16 0.14 0.03 7.34307331025544e-45 1.7505152464318e-40
101 14 PRE-B-CELL all SLC25A37 51312 29786 1.93 0.67 0.3 1.42126531343257e-143 3.38815438069191e-139
101 14 PRE-B-CELL all JCHAIN 3512 5713 1.9 0.14 0.06 6.71321708114872e-16 1.60036381997504e-11
101 14 PRE-B-CELL all HBD 3045 4829 1.79 0.58 0.08 0 0
101 14 PRE-B-CELL all ALAS2 212 397 1.76 0.54 0.05 0 0
101 14 PRE-B-CELL all HBA1 3039 4823 1.74 0.58 0.06 0 0
101 14 PRE-B-CELL all CA1 759 1368 1.73 0.52 0.06 0 0
101 14 PRE-B-CELL all AHSP 51327 18075 1.7 0.54 0.06 0 0
101 14 PRE-B-CELL all SLC4A1 6521 11027 1.57 0.45 0.04 0 0
101 14 PRE-B-CELL all SNCA 6622 11138 1.39 0.52 0.24 7.04615012667615e-87 1.67973172869833e-82
101 14 PRE-B-CELL all MZB1 51237 30125 1.36 0.22 0.16 3.23919260890723e-08 0.000772191126037
101 14 PRE-B-CELL all HBM 3042 4826 1.31 0.3 0.02 0 0
101 14 PRE-B-CELL all SLC25A39 51629 24279 1.31 0.6 0.38 4.4623846812961e-75 1.06378788417418e-70
101 14 PRE-B-CELL all TRIM58 25893 24150 1.25 0.49 0.21 5.79143503987061e-90 1.38062019915476e-85
101 14 PRE-B-CELL all IGLL5 100423062 38476 1.24 0.11 0.01 9.85575611670628e-71 2.34951370066161e-66
101 14 PRE-B-CELL all RETN 56729 20389 1.23 0.14 0.06 6.91502827924745e-16 1.6484735914898e-11
101 14 PRE-B-CELL all HMBS 3145 4982 1.2 0.41 0.13 9.18607129136328e-101 2.18986753514809e-96
101 14 PRE-B-CELL all SLC2A1 6513 11005 1.18 0.41 0.08 7.53237088543998e-171 1.79564189538004e-166
101 14 PRE-B-CELL all SELENBP1 8991 10719 1.16 0.43 0.04 0 0
101 14 PRE-B-CELL all BNIP3L 665 1085 1.16 0.58 0.46 6.89020583980629e-46 1.64255617015142e-41
101 14 PRE-B-CELL all BLVRB 645 1063 1.15 0.58 0.38 1.83532020176499e-59 4.37521982898755e-55
101 14 PRE-B-CELL all ANKRD9 122416 20096 1.11 0.38 0.04 2.54372891912403e-296 6.06399537029978e-292
101 14 PRE-B-CELL all TMCC2 9911 24239 1.07 0.34 0.03 0 0
101 14 PRE-B-CELL all XPO7 23039 14108 1.07 0.36 0.14 3.68947396072025e-61 8.79533697496101e-57
101 14 PRE-B-CELL all EPB42 2038 3381 1.05 0.38 0.04 0 0
101 14 PRE-B-CELL all BCL2L1 598 992 1.03 0.49 0.18 1.71030041425922e-101 4.07718515755256e-97
101 14 PRE-B-CELL all HBQ1 3049 4833 1.02 0.37 0.05 1.04097014578197e-246 2.48156873052964e-242
101 14 PRE-B-CELL all BSG 682 1116 0.94 0.6 0.56 2.63209747707928e-33 6.27465717560929e-29
101 14 PRE-B-CELL all ANK1 286 492 0.93 0.36 0.04 1.38648543281152e-290 3.30524262327939e-286
101 14 PRE-B-CELL all CPEB4 80315 21747 0.92 0.42 0.15 7.10715902114095e-86 1.69427563904979e-81
101 14 PRE-B-CELL all UBB 7314 12463 0.92 0.73 0.78 2.74318587001887e-35 6.53948079553798e-31
101 14 PRE-B-CELL all SSR4 6748 11326 0.91 0.51 0.74 0.006054396908517 1
101 14 PRE-B-CELL all TERF2IP 54386 19246 0.89 0.5 0.42 1.95450857639124e-25 4.65935299525908e-21
101 14 PRE-B-CELL all GLRX5 51218 20134 0.87 0.41 0.2 8.997682374858e-52 2.1449575013424e-47
101 14 PRE-B-CELL all RBM38 55544 15818 0.86 0.38 0.06 4.25979636626756e-177 1.01549285575452e-172
101 14 PRE-B-CELL all STOM 2040 3383 0.86 0.45 0.28 2.48361785986286e-39 5.92069661612707e-35
101 14 PRE-B-CELL all GYPA 2993 4702 0.85 0.28 0.03 3.00493749980263e-224 7.16347050577949e-220
101 14 PRE-B-CELL all RP11-20D14.6 NULL 0.84 0.24 0.03 9.20488761786605e-169 2.19435315922309e-164
101 14 PRE-B-CELL all IFIT1B 439996 23442 0.83 0.3 0.02 1.23488401082023e-304 2.94383999339435e-300
101 14 PRE-B-CELL all DMTN 2039 3382 0.82 0.37 0.05 3.82353044059187e-202 9.11491421732697e-198
101 14 PRE-B-CELL all RIOK3 8780 11451 0.81 0.5 0.34 2.87916754985413e-39 6.86364752209726e-35
101 14 PRE-B-CELL all DERL3 91319 14236 0.79 0.17 0.07 6.19538541546609e-21 1.47691792919296e-16
101 14 PRE-B-CELL all EPB41 2035 3377 0.79 0.43 0.22 4.26185176993694e-49 1.01598284343527e-44
101 14 PRE-B-CELL all TENT5C 54855 24712 0.78 0.41 0.15 5.90218350045385e-76 1.40702152467319e-71
101 14 PRE-B-CELL all DCAF12 25853 19911 0.77 0.38 0.22 3.84914966810028e-32 9.17598789378426e-28
101 14 PRE-B-CELL all CA2 760 1373 0.77 0.31 0.12 1.50153695839242e-49 3.57951395511169e-45
101 14 PRE-B-CELL all WNK1 65125 14540 0.77 0.44 0.3 1.80630195530367e-31 4.30604323124841e-27
101 14 PRE-B-CELL all GMPR 2766 4376 0.77 0.31 0.05 1.65266005340474e-134 3.93977630131155e-130
101 14 PRE-B-CELL all FECH 2235 3647 0.76 0.36 0.12 4.51111772422078e-78 1.07540535427699e-73
101 14 PRE-B-CELL all PCGF5 84333 28264 0.74 0.36 0.2 9.14427642524325e-32 2.17990405701374e-27
101 14 PRE-B-CELL all NARF 26502 29916 0.74 0.44 0.33 5.07820048472232e-25 1.21059221355295e-20
101 14 PRE-B-CELL all FKBP11 51303 18624 0.72 0.24 0.14 1.07442762032439e-15 2.56132800409131e-11
101 14 PRE-B-CELL all FAM210B 116151 16102 0.71 0.36 0.19 1.91950165734574e-34 4.5759000009465e-30
101 14 PRE-B-CELL all TSPAN5 10098 17753 0.7 0.31 0.07 6.48610079886357e-95 1.54622156944109e-90
101 14 PRE-B-CELL all ADIPOR1 51094 24040 0.7 0.45 0.34 2.92549834967683e-24 6.9740955157946e-20
101 14 PRE-B-CELL all STRADB 55437 13205 0.7 0.39 0.23 9.96696381539582e-33 2.37602450395221e-28
101 14 PRE-B-CELL all TRAK2 66008 13206 0.69 0.32 0.16 6.16352902981178e-33 1.46932368541683e-28
101 14 PRE-B-CELL all PCSK1N 27344 17301 0.68 0.25 0.02 4.47671500553359e-192 1.06720409016915e-187
101 14 PRE-B-CELL all IFI27 3429 5397 0.68 0.2 0.02 1.68604096962436e-157 4.01935306748752e-153
101 14 PRE-B-CELL all TAL1 6886 11556 0.67 0.28 0.05 2.57728256588077e-117 6.14398390880316e-113
101 14 PRE-B-CELL all FKBP8 23770 3724 0.67 0.57 0.61 2.7065908154872e-16 6.45224184503994e-12
101 14 PRE-B-CELL all FBXO7 25793 13586 0.67 0.48 0.39 1.42799308078197e-23 3.40419270527614e-19
101 14 PRE-B-CELL all MARCHF8 220972 23356 0.65 0.32 0.1 2.7607480014782e-68 6.58134716072389e-64
101 14 PRE-B-CELL all SMIM1 388588 44204 0.65 0.28 0.06 9.66296675336117e-107 2.30355464433377e-102
101 14 PRE-B-CELL all SEC62 7095 11846 0.65 0.53 0.45 8.55978529874037e-25 2.04056721736672e-20
101 14 PRE-B-CELL all GUK1 2987 4693 0.65 0.69 0.69 1.14907135826858e-35 2.73927121097648e-31
101 14 PRE-B-CELL all TOP1 7150 11986 0.64 0.43 0.34 1.52704363196399e-20 3.64031931423897e-16
101 14 PRE-B-CELL all KLF1 10661 6345 0.63 0.26 0.04 3.14990480102853e-126 7.50905805517192e-122
101 14 PRE-B-CELL all PNP 4860 7892 0.62 0.38 0.34 9.48043223777882e-10 2.26004024116409e-05
101 14 PRE-B-CELL all YPEL4 219539 18328 0.62 0.28 0.03 5.20002500715794e-229 1.23963396145638e-224
101 14 PRE-B-CELL all LPIN2 9663 14450 0.62 0.31 0.15 3.87832345915559e-32 9.24553529428101e-28
101 14 PRE-B-CELL all TCP11L2 255394 28627 0.62 0.28 0.07 2.06545031623207e-82 4.92382700886562e-78
101 14 PRE-B-CELL all NUDT4 11163 8051 0.61 0.39 0.28 1.46359191579964e-20 3.48905676807476e-16
101 14 PRE-B-CELL all YOD1 55432 25035 0.59 0.27 0.06 8.00146120067363e-92 1.90746833562859e-87
101 14 PRE-B-CELL all TFRC 7037 11763 0.59 0.37 0.29 1.57213874216341e-12 3.74782154744336e-08
101 14 PRE-B-CELL all HEMGN 55363 17509 0.58 0.23 0.08 1.99341204678242e-40 4.75209497832462e-36
101 14 PRE-B-CELL all RHAG 6005 10006 0.58 0.21 0.02 1.763586508221e-128 4.20421387694804e-124
101 14 PRE-B-CELL all FHDC1 85462 29363 0.58 0.24 0.02 5.04511511049784e-210 1.20270499119158e-205
101 14 PRE-B-CELL all GYPB 2994 4703 0.57 0.25 0.02 2.72793206150718e-215 6.50311724142697e-211
101 14 PRE-B-CELL all GSPT1 2935 4621 0.57 0.34 0.27 1.97443909273169e-11 4.70686535316308e-07
101 14 PRE-B-CELL all S100P 6286 10504 0.56 0.1 0.03 5.40564230327355e-24 1.28865106867738e-19
101 14 PRE-B-CELL all E2F2 1870 3114 0.56 0.25 0.04 2.33185139290527e-116 5.55890053554687e-112
101 14 PRE-B-CELL all ARG1 383 663 0.55 0.17 0.02 3.82765663740843e-130 9.12475065791796e-126
101 14 PRE-B-CELL all CCL4 6351 10630 0.55 0.11 0.05 4.67252787072305e-12 1.11388391910167e-07
101 14 PRE-B-CELL all PIM1 5292 8986 0.55 0.49 0.49 5.85967655365423e-08 0.001396888293626
101 14 PRE-B-CELL all TNS1 7145 11973 0.55 0.26 0.03 9.69022089451034e-191 2.31005175904232e-186
101 14 PRE-B-CELL all TBCEL 219899 28115 0.54 0.26 0.06 4.0438191608093e-87 9.64006049745329e-83
101 14 PRE-B-CELL all HIST1H1C 3006 4716 0.53 0.35 0.25 3.30942549185147e-14 7.88933943002473e-10
101 14 PRE-B-CELL all FOXO3 2309 3821 0.53 0.34 0.2 8.92856863390258e-24 2.12848147663604e-19
101 14 PRE-B-CELL all NPRL3 8131 14124 0.53 0.32 0.17 4.73988585575237e-28 1.12994138915281e-23
101 14 PRE-B-CELL all NCOA4 8031 7671 0.52 0.51 0.55 1.30499678453777e-08 0.000311098183466
101 14 PRE-B-CELL all RHD 6007 10009 0.52 0.22 0.02 7.12930793411708e-180 1.69955571841417e-175
101 14 PRE-B-CELL all MYL4 4635 7585 0.51 0.22 0.02 5.82537709498762e-170 1.3887116456741e-165
101 14 PRE-B-CELL all RIPOR3 140876 16168 0.51 0.2 0.02 1.4591812644709e-136 3.47854221637218e-132
101 14 PRE-B-CELL all FBXO30 84085 15600 0.5 0.22 0.06 3.73389272393584e-54 8.90122686459066e-50
101 14 PRE-B-CELL all GATA1 2623 4170 0.5 0.24 0.04 2.70291237816143e-91 6.44347281829902e-87