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About FlyAnatoView:

Single-cell RNA sequencing (scRNA-seq) is a powerful approach for measuring the transcriptomic landscape at single-cell resolution. However, while scRNA-seq data reveals what genes each cell expresses, they do not indicate where that cell was located within the tissue or organ, anatomically. FlyAnatoView was developed to project scRNA-seq data onto anatomical diagrams, restoring this missing spatial context.

Please cite the study: https://www.biorxiv.org/content/10.64898/2026.09.28.755010v1.

FlyAnatoView portal Cell name in Anatomagraph scRNAseq data (PMID) Mapping type (Graph to data)
Body epithelial cell 40275022 1 to 1
Body fat body 40275022 1 to 1
Body female reproduction 40275022 1 to many
Body glial 40275022 1 to 1
Body gut EC cell 40275022 1 to many
Body gut EE cell 40275022 1 to 1
Body heart 40275022 1 to 1
Body hemocyte 40275022 1 to 1
Body hindgut 40275022 1 to many
Body Intestine stem cell 40275022 1 to 1
Body malpighian tubule 40275022 1 to 1
Body muscle 40275022 1 to many
Body neuron 40275022 1 to many
Body oenocyte 40275022 1 to 1
Body trachea 40275022 1 to 1
Body ventral nervous system 40275022 1 to 1
Body visceral muscle, midgut 40275022 1 to 1
Dorsal vessel Adult alary muscle 35239393 1 to 1
Dorsal vessel Cardial cells 35239393 many to 1
Dorsal vessel Contractile cardiomyocyte 35239393 many to 1
Dorsal vessel Intracardial valve cells 35239393 many to 1
Dorsal vessel Ostial cells 35239393 many to 1
Dorsal vessel Pericardial cells 35239393 1 to 1
Male reproduction overview Anterior ejaculatory duct 35239393 many to 1
Male reproduction overview Ejaculatory bulb 35239393 many to 1
Male reproduction overview Ejaculatory duct 35239393 many to 1
Male reproduction overview Male accessory gland 35239393 1 to 1
Male reproduction overview Male reproductive system 35239393 1 to many
Male reproduction overview Seminal vesicle 35239393 1 to 1
Male reproduction overview Twisted vas deferens 35239393 not mapped
Male reproduction overview Vas deferens 35239393 not mapped
Malpighian Tubules Bar-shaped cell of initial segment 35696569 1 to many
Malpighian Tubules Bar-shaped cell of transitional segment 35696569 1 to many
Malpighian Tubules Principal cell of initial segment 35696569 1 to many
Malpighian Tubules Principal cell of lower segment 35696569 many to 1
Malpighian Tubules Principal cell of lower ureter 35696569 1 to 1
Malpighian Tubules Principal cell of main segment 35696569 1 to 1
Malpighian Tubules Principal cell of transitional segment 35696569 1 to many
Malpighian Tubules Principal cell of upper ureter 35696569 1 to 1
Malpighian Tubules Renal stem cells 35696569 1 to 1
Malpighian Tubules Stellate cell of main segment 35696569 1 to 1
Malpighian Tubules Tip cells 35696569 not mapped
Mid midgut copper cell 35239393 1 to 1
Mid midgut enteroblast 35239393 1 to 1
Mid midgut enterocytes 35239393 1 to 1
Mid midgut intestinal stem cell 35239393 1 to 1
Mid midgut large flat cell 35239393 1 to 1
Mid midgut middle midgut class I enteroendocrine cell 35239393 Many to 1
Mid midgut middle midgut class II enteroendocrine cell 35239393 Many to 1
Mid midgut midgut circular muscle cells 35239393 Many to 1
Mid midgut midgut longitudinal muscle cells 35239393 Many to 1
Ovary Germarium Anterior escort cells 33159074 1 to 1
Ovary Germarium Central escort cells 33159074 1 to 1
Ovary Germarium Cytoblast 33159074 many to 1
Ovary Germarium Female germline 16 cell cyst 33159074 1 to 1
Ovary Germarium Female germline 2 cell cyst 33159074 many to 1
Ovary Germarium Female germline 4 cell cyst 33159074 many to 1
Ovary Germarium Female germline 8 cell cyst 33159074 many to 1
Ovary Germarium Follicle cells 33159074 1 to many
Ovary Germarium Follicle stem cells 33159074 1 to 1
Ovary Germarium Germarium cap cell 33159074 1 to 1
Ovary Germarium Germline stem cells 33159074 1 to 1
Ovary Germarium Oocyte 33159074 not mapped
Ovary Germarium Posterior escort cells 33159074 1 to 1
Ovary Germarium Prefollicle cells 33159074 1 to many
Ovary Germarium Terminal fillament cells 33159074 1 to 1
proventriculus Anterior Midgut 41593082  Many to 1
proventriculus Esophagus (foregut) 41593082  1 to 1
proventriculus Zone 1 (foregut) 41593082  1 to 1
proventriculus Zone 2/3 (foregut) 41593082  1 to 1
proventriculus Zone 3/4 (border cells) 41593082  1 to 1
proventriculus Zone 4 41593082  1 to 1
proventriculus Zone 5 41593082  1 to 1
proventriculus Zone 5/6 (border cells) 41593082  1 to 1
proventriculus Zone 6 41593082  1 to 1
Testis Cyst progenitor cells 35239393 1 to many
Testis Head cyst cell 35239393 1 to 1
Testis Hub cells 35239393 not mapped
Testis Male germline stem cells 35239393 1 to many
Testis Muscle sheath 35239393 not mapped
Testis Primary gonial cell 35239393 many to 1
Testis Primary spermatocyte 35239393 1 to many
Testis Primary spermatocyte cyst cell 35239393 many to many
Testis Secondary spermatocyte 35239393 1 to many
Testis Secondary spermatocyte cyst cell 35239393 many to many
Testis Spermatid 35239393 1 to 1
Testis Spermatogonial cyst cell 35239393 many to 1
Testis Spermatogonium 35239393 1 to1
Testis Spermatozoon 35239393 1 to 1
Testis Tail cyst cell 35239393 1 to many
Trachea Air Sac Primordium 38448482  1 to 1
Trachea Dorsal Branch 38448482  1 to 1
Trachea Dorsal Trunk 38448482  1 to 1
Trachea Ganglionic Branches 38448482  1 to 1
Trachea Lateral Trunk 38448482  1 to 1
Trachea Progenitor Cells 38448482  1 to 1
Trachea Spiracular Branch 38448482  1 to 1
Trachea Transverse Connective 38448482  1 to 1
Trachea Visceral Branch 38448482  1 to 1
Trachea Visceral Branch 38448482  1 to 1