PathON - Pathway Analysis Tool

1. Enter Data (choose data format first)

a. Select Type of Input
b. Select Type of Input

2. Choose Analysis:

Confidence:

3. Choose Threshold:

(values above and under the - of this threshold)
(values in the top and bottom %)

Example of input files:

  1. Tab/comma delimited text file or excel spread sheet of RNA-Seq data (eg. FPKM or TPM values) for control and experiment samples. Please name the column headers according to the example file
    FBgn control1 control2 data1 data2
    FBgn0000003 259508 294806 296957 322142
    FBgn0000008 1.056016 0.871348 7.8228371 7.371974
    FBgn0000014 3.426636 1.892972 2.948463 3.357747
    FBgn0000015 1.706773 0.796946 0.6492518 0.5241473
    FBgn0000017 2.125105 1.005055 3.083105 0.5969986
    FBgn0000018 1.3666 1.15488 1.40831 0.985265
    FBgn0000022 0 0.060552 0.298234 0.0127875
  2. Tab/comma delimited text file or excel spread sheet of RNA-Seq data (eg. FPKM or TPM values) for one type of sample with or without replicates
    FBgn data1 data2
    FBgn0000042 199.3337 405.0041
    FBgn0000043 19.5393 60.9437
    FBgn0000044 34.2968 13.0075
    FBgn0000045 0.511129 0.423392
    FBgn0000046 3.324057 3.495537
    FBgn0000047 0.473196 0.28821
    FBgn0000052 29.25787 35.66972
  3. Tab/comma delimited text file or excel spread sheet of pre-calculated ratios (eg. log2 ratio of the fold changes of experimental vs control)
    FBgn Ratio
    FBgn0000008 2.88565534
    FBgn0000014 0.24545322
    FBgn0000015 -0.4365741
    FBgn0000017 0.38343027
    FBgn0000018 -0.0662497
    FBgn0000022 0