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Search for DIOPT Orthologs
To search for orthologous genes at GuideXpress, first select an input-output species pair; then enter an FBgn, Gene Symbol for Drosophila genes,
a VectorBase ID for mosquito genes, or an Entrez Gene ID/Symbol for Ixodes scapularis genes;
select filter options (or leave default settings); and then click submit.
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Search for Mosquito or Tick CRISPR sgRNA Designs
To search for CRISPR sgRNA designs for gene knockout in
Anopheles, Aedes, or Culex,
enter a gene ID or genomic location, then click the
'submit' button. The results page will include an embedded JBrowse view and below that, a table.
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Search Mosquito Cell Line Expression Data
To search RNA expression data from the Anopheles gambiae Sua5B cell line,
enter a list of VectorBase IDs or gene names,
then click the 'submit' button. Raw data from
VectorBase dataset DS_1c16f776df processed using Salmon
and tximport.
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Raw Data FTP Page
Select and
download data sets here
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Input Data Sources
Data Sources used in designs
CRISPR design in Drosophila melanogaster:
https://www.flyrnai.org/crispr3
Enter one ID per line.
Enter one ID per line.
Search by gene.
Search by genomic location.