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Search for DIOPT Orthologs
To search for orthologous genes at GuideXpress, first select an input-output species pair; then
enter an FBgn, Gene Symbol for Drosophila genes,
a VectorBase ID for mosquito genes, or an
Entrez Gene ID/Symbol for Ixodes scapularis genes;
select filter options (or leave default settings); and then click submit.
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Search for Mosquito or Tick CRISPR sgRNA Designs
To search for CRISPR sgRNA designs for gene knockout in
Anopheles, Aedes, or Culex,
enter a gene ID or genomic location, then click the
'submit' button. The results page will include an embedded JBrowse view and below that, a table.
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Search Mosquito Cell Line Expression Data
To search RNA expression data from the Anopheles gambiae Sua5B cell line,
enter a list of VectorBase IDs or gene
names,
then click the 'submit' button. Raw data from
VectorBase dataset DS_1c16f776df processed using Salmon
and tximport.
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Raw Data FTP Page
Select and
download data sets here
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Input Data Sources
Data Sources used in designs
CRISPR design in Drosophila melanogaster:
https://www.flyrnai.org/crispr3
Enter one ID per line.
Enter one ID per line.
Search by gene Knock Out.
Search by gene over expression.
Search by genomic location.
Enter one gRNA sequence per line.