DGET - Drosophila Gene Expression Tool

Overview

DGET was designed to facilitate the retrieval and analysis of RNA-Seq based expression data in a high-throughput fashion. The tool can be compared with expression features at FlyMine and FlyBase. FlyMine provides array-based expression data for high-throughput analysis. FlyBase provides both array-base and RNA-Seq based expression data one gene a time. As a supplement to FlyMine and FlyBase, DGET allows batch searches, filtration and enrichment analyses for a list of genes. In addition, at DGET users can search for genes with similar expression profiles.

Cite DGET: https://pubmed.ncbi.nlm.nih.gov/28187709/

Datasets currently covered at DGET

DataSetID Name Type Source PMID Unit
1 tissues (modENCODE) bulk RNAseq flybase 24670639 RPKM
2 cell lines (modENCODE) bulk RNAseq flybase 21177962 RPKM
3 development (modENCODE) bulk RNAseq flybase 21179090 RPKM
4 treatments (modENCODE) bulk RNAseq flybase 24670639 RPKM
5 Ras cell lines (Simcox lab) bulk RNAseq publication 37470241 RPKM
6 gut-subregion (Spradling lab) bulk RNAseq publication 23991285 RPKM
7 gut-subregion and cell-type (Buchon lab) bulk RNAseq publication 26146076 RPKM
8 FCA pseudobulk scRNAseq FlyCellAtlas 35239393 CPM
9 tissues (FlyAtlas2) bulk RNAseq flybase 29069479 FPKM
10 thoracs yki tumor time course (Perrimon lab) bulk RNAseq publication 37582831 FPKM
11 insulin treatment S2R+ cells (Perrimon lab) bulk RNAseq publication 32071193 RPKM
12 FCA pseudobulk scRNAseq DRSC 40275022 CPM

Versions

current version: 2.0.2